arXiv subjects

Elliot K. Fishman

Publications and source records attributed to Elliot K. Fishman.

21 records · Page 2Linked to original sources

arXiv2018

Training Multi-organ Segmentation Networks with Sample Selection by Relaxed Upper Confident Bound

Deep convolutional neural networks (CNNs), especially fully convolutional networks, have been widely applied to automatic medical image segmentation problems, e.g., multi-organ segmentation. Existing CNN-based segmentation methods mainly focus on looking for increasingly powerful network architectures, but pay less attention to data sampling strategies for training networks more effectively. In this paper, we present a simple but effective sample selection method for training multi-organ segmentation networks. Sample selection exhibits an exploitation-exploration strategy, i.e., exploiting hard samples and exploring less frequently visited samples. Based on the fact that very hard samples might have annotation errors, we propose a new sample selection policy, named Relaxed Upper Confident Bound (RUCB). Compared with other sample selection policies, e.g., Upper Confident Bound (UCB), it exploits a range of hard samples rather than being stuck with a small set of very hard ones, which mitigates the influence of annotation errors during training. We apply this new sample selection policy to training a multi-organ segmentation network on a dataset containing 120 abdominal CT scans and show that it boosts segmentation performance significantly.

cs.CV↗

arXiv2017

Deep Supervision for Pancreatic Cyst Segmentation in Abdominal CT Scans

Automatic segmentation of an organ and its cystic region is a prerequisite of computer-aided diagnosis. In this paper, we focus on pancreatic cyst segmentation in abdominal CT scan. This task is important and very useful in clinical practice yet challenging due to the low contrast in boundary, the variability in location, shape and the different stages of the pancreatic cancer. Inspired by the high relevance between the location of a pancreas and its cystic region, we introduce extra deep supervision into the segmentation network, so that cyst segmentation can be improved with the help of relatively easier pancreas segmentation. Under a reasonable transformation function, our approach can be factorized into two stages, and each stage can be efficiently optimized via gradient back-propagation throughout the deep networks. We collect a new dataset with 131 pathological samples, which, to the best of our knowledge, is the largest set for pancreatic cyst segmentation. Without human assistance, our approach reports a 63.44% average accuracy, measured by the Dice-Sørensen coefficient (DSC), which is higher than the number (60.46%) without deep supervision.

cs.CV↗

arXiv2017

A Fixed-Point Model for Pancreas Segmentation in Abdominal CT Scans

Deep neural networks have been widely adopted for automatic organ segmentation from abdominal CT scans. However, the segmentation accuracy of some small organs (e.g., the pancreas) is sometimes below satisfaction, arguably because deep networks are easily disrupted by the complex and variable background regions which occupies a large fraction of the input volume. In this paper, we formulate this problem into a fixed-point model which uses a predicted segmentation mask to shrink the input region. This is motivated by the fact that a smaller input region often leads to more accurate segmentation. In the training process, we use the ground-truth annotation to generate accurate input regions and optimize network weights. On the testing stage, we fix the network parameters and update the segmentation results in an iterative manner. We evaluate our approach on the NIH pancreas segmentation dataset, and outperform the state-of-the-art by more than 4%, measured by the average Dice-Sørensen Coefficient (DSC). In addition, we report 62.43% DSC in the worst case, which guarantees the reliability of our approach in clinical applications.

cs.CV↗