arXiv subjects

Elsebeth Schröder

Publications and source records attributed to Elsebeth Schröder.

16 recordsLinked to original sources

arXiv2026

First-principle study of the influence of hydroxyapatite on magnesium surfaces

Hydroxyapatite (HA) on a magnesium (Mg) surface is studied using density functional theory, to help understand the effect of HA coating and alloying in the surfaces of Mg-based biodegradable implants. We determine the adsorption energies and structural changes of a single layer of HA on pure Mg(0001) and on sparsely calcium (Ca) or zinc (Zn) doped Mg(0001) and find that both Zn and Ca doping improves the adsorption, except in a few positions of HA relative to the dopant position. All adsorption configurations, whether with pure or doped Mg surfaces, show deformation of the surface and HA layer. For Ca doping, we found that for a certain adsorption configuration, the dopant Ca atom moves out of the Mg surface and into the HA layer, leaving behind a Mg vacancy in the top layer of the Mg surface. Plots of electron density changes show that electrons accumulate around the Ca dopant and the neighboring Mg atoms, while in Zn doping this is less pronounced. Overall, our results demonstrate that the dopant choice and relative position of HA influence the interaction between HA and Mg-surfaces, and affect both adsorption energies and atomic and electronic structures.

cond-mat.mtrl-sci↗

arXiv2026

Towards an understanding of magnesium in a biological environment: A density functional theory study

Density functional theory is used to investigate the interactions between a layer of magnesium hydroxide, Mg(OH)2, the magnesium (Mg) surface Mg(0001), and the three amino acids glycine, proline and glutamine. The aim is to improve the understanding of Mg behavior in biologically relevant environments, such as the ones that biodegradable implants experience in the body. For a simple model of such conditions, adsorption of amino acids are studied. With the layer of Mg(OH)2 as a model of either slightly corroded Mg, or intentionally coated Mg, the interfacial interaction between a layer of Mg(OH)2 and Mg(0001) is first examined in the absence of the molecules. Then follows analyses that include amino acids on top of the Mg(OH)2 layer. We find that the Mg(OH)2/Mg(0001) interaction is weak and that the layer of Mg(OH)2 can readily slide across the Mg surface. The presence of amino acids is found to have a limited influence on the adsorption of Mg(OH)2 on Mg(0001), decreasing the binding by at most 3%, while more layers of Mg(OH)2 strengthen the Mg(OH)2/Mg(0001) binding by 13%. This is still less than the binding of Mg(OH)2 layers within its native bulk structure, and our findings indicate that only a small number of hydroxide layers are required before it is energetically more favorable for Mg(OH)2 to create bulk than to stay on Mg(0001) as single layers. This provides insight into early-stage surface processes relevant for magnesium-based implant materials.

cond-mat.mtrl-sci↗

arXiv2026

A density functional theory study of amino acids on Mg and Mg-based alloys

Magnesium (Mg) has mechanical properties similar to bone tissue, and Mg ions take part in the metabolism. This makes Mg of interest for biocompatible degradable body implants, provided that its high corrosion rate can be inhibited. Slightly alloying Mg and adding surface coatings can slow down the corrosion processes without significantly changing the mechanical properties. Use of coating molecules that are native to the body increase the likelihood of making the surface biocompatible, for example by use of amino acids. We here present a density functional theory (DFT) study of the adsorption on Mg(0001) of the amino acids glycine, L-proline, and L-hydroxyproline (Hyp), the main amino acid content of collagen. We investigate how binding of the functional groups of Hyp are affected when Mg(0001) is slightly alloyed with zinc, lithium or aluminium, and we also model the immersion of the systems in a water environment to see how this affects the binding.

cond-mat.mtrl-sci↗

arXiv2025

Wafer-Scale Single-Crystalline Monolayer Graphene

Producing large-area single-crystalline graphene is key to realizing its full potential in advanced applications, including twistronics. Yet, controlling graphene growth kinetics to avoid grain boundaries or multilayer growth remains challenging. Here, we demonstrate single-crystalline graphene free from multilayer domains via one-step delamination of epitaxial graphene from silicon carbide (SiC). This is enabled by a specific surface reconstruction of 4H-SiC(0001) achieved in our growth conditions. High crystalline quality is confirmed by the observation of the half-integer quantum Hall effect -- the hallmark of monolayer graphene -- in near cm-sized crystals. The scalability of our process, explored with 4''-wafers, represents an advance toward large-scale integration of high-performance graphene applications.

cond-mat.mes-hall↗

arXiv2025

Nature of frontier quasi-particle states in nitrogen-base systems

Understanding photophysical properties of DNA is important: It can help us elucidate and probe the impact of charges and free radicals in the cellular environment. For example, a photoemission at a given nucleobase means that we both charge it and place an electron right next to a neighboring part of the genetic code. Inverse photoemission means that we trap a free electron (at some empty state or resonance), and instead emit a low-energy photon. This may reduce the damage if it happens at an already charged base, but it can cause extra damage if it arises somewhere else. Predicting the nature of sudden optically-driven excitations, termed quasi-particles (QPs), help us detail interactions and possibly control the damage that might follow. Also, these QPs contain information on the larger DNA assembly because they reflect the fingerprints of nucleobase polarity, the hydrogen bonding in Watson-Crick pairs, and the van der Waals (vdW) interactions in the Watson-Crick-pair stacking that makes up the genome. In this study, we utilize the recently developed (optimally tuned) range-separated hybrid vdW density functional, AHBR-mRSH* [JPCM 37, 211501 (2025)] to analyze the electron-attached and ionized QP states of these DNA components, with a particular focus on dipole- and multipole-trapped empty states (bound or resonances). We also evaluate critical properties such as dipole and quadrupole moments, QP HOMO-LUMO energy gaps, and transition-dipole moments. Finally, we classify the Watson-Crick stacked dimers based on their QP nature. This classification provides the foundation for proposing a model of DNA reactivity and photo-physical activity.

physics.bio-ph↗

arXiv2019

Untwinned YBa$_2$Cu$_3$O$_{7-δ}$ thin films on MgO substrates: a platform to study strain effects on the local orders in cuprates

We have grown untwinned YBa$_2$Cu$_3$O$_{7-δ}$ (YBCO) films on (110) MgO substrates that were pre-annealed at high temperature in oxygen atmosphere. The annealing results in surface reconstruction with shallow facets, which induce the suppression of the YBCO twinning domains, and the preferential alignment of the CuO chains along one of the in-plane directions of the substrate. Because of the large mismatch between the in-plane lattice parameters of film and substrate, the strain induced by the MgO into the YBCO layer is strong and very peculiar. The YBCO film is compressed, with respect to the bulk, and presents a unidirectional buckling of the atomic planes, along the chains' direction, due to a deformation of the copper-oxygen octahedra. The YBCO films, which can be grown with thicknesses down to few unit cells and oxygen doping levels spanning most of the superconducting dome, are patterned into nanowires with dimensions down to 50 nm. The anisotropies due to the untwinning state are preserved in these structures; moreover, additional anisotropies appear, in ultrathin structures where strain effects become more pronounced. Such untwinned and compressively strained films can therefore be used as a platform to study the interplay between strain and the various local orders in the normal state of YBCO.

cond-mat.supr-con↗

arXiv2018

Extent of Fock-exchange mixing for a hybrid van der Waals density functional?

The vdW-DF-cx0 exchange-correlation hybrid design has a truly nonlocal correlation component and aims to facilitate concurrent descriptions of both covalent and non-covalent molecular interactions. The vdW-DF-cx0 design mixes a fixed ratio, $a$, of Fock exchange into the consistent-exchange van der Waals density functional, vdW-DF-cx. The mixing value $a$ is sometimes taken as a semi-empirical parameter in hybrid formulations. Here, instead, we assert a plausible optimum average $a$ value for the vdW-DF-cx0 design from a formal analysis; A new, independent determination of the mixing $a$ is necessary since the Becke fit, yielding $a'=0.2$, is restricted to semilocal correlation and does not reflect non-covalent interactions. To proceed, we adapt the so-called two-legged hybrid construction to a starting point in the vdW-DF-cx functional. For our approach, termed vdW-DF-tlh, we estimate the properties of the adiabatic-connection specification of the exact exchange-correlation functional, by combining calculations of the Fock exchange and of the coupling-constant variation in vdW-DF-cx. We find that such vdW-DF-tlh hybrid constructions yield accurate characterizations of molecular. The accuracy motivates trust in the vdW-DF-tlh determination of system-specific values of the Fock-exchange mixing. We find that an average value $a'=0.2$ best characterizes the vdW-DF-tlh description of covalent and non-covalent interactions, although there exists some scatter. This finding suggests that the original Becke value, $a'=0.2$, also represents an optimal average Fock-exchange mixing for the new, truly nonlocal-correlation hybrids. To enable self-consistent calculations, we furthermore define and test a zero-parameter hybrid functional vdW-DF-cx0p (having fixed mixing $a'=0.2$) and document that this truly nonlocal correlation hybrid works for general molecular interactions.

physics.chem-ph↗

arXiv2018

Signatures of van der Waals binding: a coupling-constant scaling analysis

The van der Waals (vdW) density functional (vdW-DF) method [ROPP 78, 066501 (2015)] describes dispersion or vdW binding by tracking the effects of an electrodynamic coupling among pairs of electrons and their associated exchange-correlation holes. This is done in a nonlocal-correlation energy term $E_c^{nl}$, which permits density functional theory calculation in the Kohn-Sham scheme. However, to map the nature of vdW forces in the fully interacting materials system, it is necessary to compensate for associated kinetic-correlation energy effects. Here we present a coupling-constant scaling analysis that also permits us to compute the kinetic-correlation energy $T_c^{nl}$ that is specific to the vdW-DF account of nonlocal correlations. We thus provide a spatially-resolved analysis of the total nonlocal-correlation binding, including vdW forces, in both covalently and non-covalently bonded systems. We find that kinetic-correlation energy effects play a significant role in the account of vdW or dispersion interactions among molecules. We also find that the signatures that we reveal in our full-interaction mapping are typically given by the spatial variation in the $E_c^{nl}$ binding contributions, at least in a qualitative discussion. Furthermore, our full mapping shows that the total nonlocal-correlation binding is concentrated to pockets in the sparse electron distribution located between the material fragments.

cond-mat.str-el↗

arXiv2016

Methylbenzenes on graphene

We present a theory study of the physisorption of the series of methylbenzenes (toluene, xylene and mesitylene), as well as benzene, on graphene. This is relevant for the basic understanding of graphene used as a material for sensors and as an idealized model for the carbon in active carbon filters. The molecules are studied in a number of positions and orientations relative graphene, using density functional theory with the van der Waals functional vdW-DF. We focus on the vdW-DF1 and vdW-DF-cx functionals, and find that the binding energy of the molecules on graphene grows linearly with the number of methyl groups, at the rate of 0.09 eV per added methyl group.

physics.comp-ph↗

arXiv2016

Involving high school students in computational physics university research: Theory calculations of toluene adsorbed on graphene

To increase public awareness of theoretical materials physics, a small group of high school students is invited to participate actively in a current research projects at Chalmers University of Technology. The Chalmers research group explores methods for filtrating hazardous and otherwise unwanted molecules from drinking water, for example by adsorption in active carbon filters. In this project, the students use graphene as an idealized model for active carbon, and estimate the energy of adsorption of the methylbenzene toluene on graphene with the help of the atomic-scale calculational method density functional theory. In this process the students develop an insight into applied quantum physics, a topic usually not taught at this educational level, and gain some experience with a couple of state-of-the-art calculational tools in materials research.

physics.ed-ph↗

arXiv2014

van der Waals forces in density functional theory: The vdW-DF method

A density functional theory (DFT) that accounts for van der Waals (vdW) interactions in condensed matter, materials physics, chemistry, and biology is reviewed. The insights that led to the construction of the Rutgers-Chalmers van der Waals Density Functional (vdW-DF) are presented with the aim of giving a historical perspective, while also emphasising more recent efforts which have sought to improve its accuracy. In addition to technical details, we discuss a range of recent applications that illustrate the necessity of including dispersion interactions in DFT. This review highlights the value of the vdW-DF method as a general-purpose method, not only for dispersion bound systems, but also in densely packed systems where these types of interactions are traditionally thought to be negligible.

cond-mat.mtrl-sci↗

arXiv2014

Interpretation of van der Waals density functionals

The nonlocal correlation energy in the van der Waals density functional (vdW-DF) method [Phys. Rev. Lett. 92, 246401 (2004); Phys. Rev. B 76, 125112 (2007); Phys. Rev. B 89, 035412 (2014)] can be interpreted in terms of a coupling of zero-point energies of characteristic modes of semilocal exchange-correlation (xc) holes. These xc holes reflect the internal functional in the framework of the vdW-DF method [Phys. Rev. B 82, 081101(2010)]. We explore the internal xc hole components, showing that they share properties with those of the generalized-gradient approximation. We use these results to illustrate the nonlocality in the vdW-DF description and analyze the vdW-DF formulation of nonlocal correlation.

physics.chem-ph↗

arXiv2014

van der Waals density functionals built upon the electron-gas tradition: Facing the challenge of competing interactions

The theoretical description of sparse matter attracts much interest, in particular for those ground-state properties that can be described by density functional theory (DFT). One proposed approach, the van der Waals density functional (vdW-DF) method, rests on strong physical foundations and offers simple yet accurate and robust functionals. A very recent functional within this method called vdW-DF-cx [K. Berland and P. Hyldgaard, Phys. Rev. B 89, 035412] stands out in its attempt to use an exchange energy derived from the same plasmon-based theory from which the nonlocal correlation energy was derived. Encouraged by its good performance for solids, layered materials, and aromatic molecules, we apply it to several systems that are characterized by competing interactions. These include the ferroelectric response in PbTiO$_3$, the adsorption of small molecules within metal-organic frameworks (MOFs), the graphite/diamond phase transition, and the adsorption of an aromatic-molecule on the Ag(111) surface. Our results indicate that vdW-DF-cx is overall well suited to tackle these challenging systems. In addition to being a competitive density functional for sparse matter, the vdW-DF-cx construction presents a more robust general purpose functional that could be applied to a range of materials problems with a variety of competing interactions.

cond-mat.mtrl-sci↗

arXiv2012

A van der Waals density functional study of chloroform and bromoform on graphene

A calculational study of the trihalomethanes chloroform (CHCl_3) and bromoform (CHBr_3) adsorbed on graphene is presented. The study uses the van der Waals density functional method vdW-DF to obtain adsorption energies and adsorption structures for these molecules of environmental concern. In this study chloroform is found to adsorb with the H atom pointing away from graphene, with adsorption energy 357 meV (34.4 kJ/mol). For bromoform the calculated adsorption energy is 404 meV (39.0 kJ/mol). The corrugation of graphene as seen by chloroform is small, the difference in adsorption energy along the graphene plane is less than 6 meV.

cond-mat.mtrl-sci↗

arXiv2012

Desorption of n-alkanes from graphene: a van der Waals density functional study

A recent study of temperature programmed desorption (TPD) measurements of small n-alkanes (CNH2N+2) from C(0001) deposited on Pt(111) shows a linear relationship of the desorption energy with increasing n-alkane chain length. We here present a van der Waals density functional study of the desorption barrier energy of the ten smallest n-alkanes (N = 1 to 10) from graphene. We find linear scaling with N, including a nonzero intercept with the energy axis, i.e., an offset at the extrapolation to N = 0. This calculated offset is quantitatively similar to the results of the TPD measurements. From further calculations of the polyethylene polymer we offer a suggestion for the origin of the offset.

cond-mat.mtrl-sci↗

arXiv2011

Evaluation of New Density Functional with Account of van der Waals Forces by Use of Experimental H2 Physisorption Data on Cu(111)

Detailed experimental data for physisorption potential-energy curves of H2 on low-indexed faces of Cu challenge theory. Recently, density-functional theory has been developed to also account for nonlocal correlation effects, including van der Waals forces. We show that one functional, denoted vdW-DF2, gives a potential-energy curve promisingly close to the experiment-derived physisorptionenergy curve. The comparison also gives indications for further improvements of the functionals.

cond-mat.mtrl-sci↗