arXiv subjects

Emanuele Crosato

Publications and source records attributed to Emanuele Crosato.

7 recordsLinked to original sources

arXiv2025

Stochastic Multistability of Clonallike States in the Eigen Model: a Fidelity Catastrophe

The Eigen model is a prototypical toy model of evolution that is synonymous with the so-called error catastrophe: when mutation rates are sufficiently high, the genetic variant with the largest replication rate does not occupy the largest fraction of the total population because it acts as a source for the other variants. Here we show that, in the stochastic version of the Eigen model, there is also a fidelity catastrophe. This arises due to the state-dependence of fluctuations and occurs when rates of mutation fall beneath a certain threshold, which we calculate. The result is a type of noise-induced multistability whereupon the system stochastically switches between short-lived regimes of effectively clonal behavior by different genetic variants. Most notably, when the number of possible variants -- typically $\sim4^L$, with $L\gg 1$ the length of the genome -- is significantly larger than the population size, there is only a vanishingly small interval of mutation rates for which the Eigen model is neither in the fidelity- nor error-catastrophe regimes, seemingly subverting traditional expectations for evolutionary systems.

q-bio.PE↗

arXiv2022

Dynamical phases in growing populations: understanding recovery from bottlenecks

Since steep declines in a population's size also typically alter its composition, population bottlenecks are considered highly important for evolution. However, despite such significance, the mechanisms governing the impact of a given population bottleneck remain poorly understood. In this context, we show that long-term post-bottleneck outcomes can depend crucially on the rate at which a diminished population grows whilst recovering. That is, two otherwise identical populations, each having undergone the same bottleneck, can fixate on dramatically different demographics due to different rates of post-bottleneck growth. This behaviour is moreover shown to change non-trivially with different levels of mutation. The underlying mechanism can be traced to intrinsic fluctuations whose standard deviation decreases in time with the inverse square root of the growing population size. Crucially, such decreasing fluctuations couple to the underlying dynamics and result in distinct regimes of (non-equilibrium) demographic behaviour, delimited by abrupt transitions at critical population sizes. Seen through this lens, growth and mutation alter evolutionary outcomes by changing the duration and character of dynamical phases; a feature that we speculate may be of generic importance across many systems.

q-bio.PE↗

arXiv2020

The Polycentric Dynamics of Melbourne and Sydney: Suburb attractiveness divides a city at the home ownership level

Urban dynamics in large metropolitan areas result from complex interactions across social, economic, and political factors, including population distribution, flows of wealth, and infrastructure requirements. We develop a Census-calibrated model of urban dynamics for the Greater Sydney and Melbourne areas for 2011 and 2016, highlighting the evolution of population distributions and the housing market structure in these two cities in terms of their mortgage and rent distributions. We show that there is a tendency to homophily between renters and mortgage holders: renters tend to cluster nearer commercial centres, whereas mortgagors tend to populate the outskirts of these centres. We also identify a critical threshold at which the long-term evolution of these two cities will bifurcate between a `sprawling' and a `polycentric' configuration, showing that both cities lie on the polycentric side of the critical point in the long-run. Importantly, there is a divergence of these centric tendencies between the renters and mortgage holders. The polycentric patterns characterising the mortgagors are focused around commercial centres, and we show that the emergent housing patterns follow the major transport routes through the cities.

physics.soc-ph↗

arXiv2019

Thermodynamics of emergent structure in active matter

Active matter is rapidly becoming a key paradigm of out-of-equilibrium soft matter exhibiting complex collective phenomena, yet the thermodynamics of such systems remain poorly understood. In this letter we study the nonequilbrium thermodynamics of large scale active systems capable of mobility-induced phase separation and polar alignment, using a fully under-damped model which exhibits hidden entropy productions not previously reported in the literature. We quantify steady state entropy production at each point in the phase diagram, revealing characteristic dissipation rates associated with the distinct phases and configurational structure. This reveals sharp discontinuities in the entropy production at phase transitions and facilitates identification of the thermodynamics of micro-features, such as defects in the emergent structure. The interpretation of the time reversal symmetry in the dynamics of the particles is found to be crucial.

cond-mat.stat-mech↗

arXiv2018

On critical dynamics and thermodynamic efficiency of urban transformations

Urban transformations within large and growing metropolitan areas often generate critical dynamics affecting social interactions, transport connectivity and income flow distribution. We develop a statistical-mechanical model of urban transformations, exemplified for Greater Sydney, and derive a thermodynamic description highlighting critical regimes. We consider urban dynamics at two time scales: fast dynamics for the distribution of population and income, modelled via the maximum entropy principle, and slower dynamics evolving the urban structure under spatially distributed competition. We identify phase transitions between dispersed and polycentric phases, induced by varying the social disposition---a factor balancing the suburbs' attractiveness---in contrast with the travel impedance. Using the Fisher information we identify critical thresholds and quantify the thermodynamic cost of urban transformation, as the minimal work required to vary the underlying parameter. Finally, we introduce the notion of thermodynamic efficiency of urban transformation, as the ratio of the order gained during a change to the amount of required work, showing that this measure is maximised at criticality.

physics.soc-ph↗

arXiv2018

Thermodynamics and computation during collective motion near criticality

We study self-organisation of collective motion as a thermodynamic phenomenon, in the context of the first law of thermodynamics. It is expected that the coherent ordered motion typically self-organises in the presence of changes in the (generalised) internal energy and of (generalised) work done on, or extracted from, the system. We aim to explicitly quantify changes in these two quantities in a system of simulated self-propelled particles, and contrast them with changes in the system's configuration entropy. In doing so, we adapt a thermodynamic formulation of the curvatures of the internal energy and the work, with respect to two parameters that control the particles' alignment. This allows us to systematically investigate the behaviour of the system by varying the two control parameters to drive the system across a kinetic phase transition. Our results identify critical regimes and show that during the phase transition, where the configuration entropy of the system decreases, the rates of change of the work and of the internal energy also decrease, while their curvatures diverge. Importantly, the reduction of entropy achieved through expenditure of work is shown to peak at criticality. We relate this both to a thermodynamic efficiency and the significance of the increased order with respect to a computational path. Additionally, this study provides an information-geometric interpretation of the curvature of the internal energy as the difference between two curvatures: the curvature of the free entropy, captured by the Fisher information, and the curvature of the configuration entropy.

cond-mat.stat-mech↗

arXiv2017

Informative and misinformative interactions in a school of fish

It is generally accepted that, when moving in groups, animals process information to coordinate their motion. Recent studies have begun to apply rigorous methods based on Information Theory to quantify such distributed computation. Following this perspective, we use transfer entropy to quantify dynamic information flows locally in space and time across a school of fish during directional changes around a circular tank, i.e. U-turns. This analysis reveals peaks in information flows during collective U-turns and identifies two different flows: an informative flow (positive transfer entropy) based on fish that have already turned about fish that are turning, and a misinformative flow (negative transfer entropy) based on fish that have not turned yet about fish that are turning. We also reveal that the information flows are related to relative position and alignment between fish, and identify spatial patterns of information and misinformation cascades. This study offers several methodological contributions and we expect further application of these methodologies to reveal intricacies of self-organisation in other animal groups and active matter in general.

q-bio.QM↗