arXiv subjects

Emmanuel Chemla

Publications and source records attributed to Emmanuel Chemla.

At least 19 recordsLinked to original sources

arXiv2026

Beyond task performance: Decoding bioacoustic embeddings with speech features

Pretrained audio embeddings are standard in bioacoustics, yet little is known about which acoustic features these models encode, nor which are useful for a given task. This hinders transparency and limits extension to rare species or data-scarce domains. Here we reveal which speech-like features are encoded in bioacoustic representations. Using the 88~eGeMAPS features across six taxonomic groups, we apply linear and nonlinear regression probes to quantify which acoustic properties each model captures. Results confirm a ``no free lunch'' pattern: no single model captures the full feature space. A concatenated embedding achieves the highest performance, suggesting complementary acoustic space coverage across models. Loudness features are best encoded ($R^2 = 0.76$) while F0 is hardest to recover ($R^2 = 0.33$). By cross-referencing recoverability with per-species feature salience (NMI), we derive data-driven model selection guidance for bioacoustics.

cs.LG↗

arXiv2026

Polar probe linearly decodes semantic structures from LLMs

How do artificial neural networks bind concepts to form complex semantic structures? Here, we propose a simple neural code, whereby the existence and the type of relations between entities are represented by the distance and the direction between their embeddings, respectively. We test this hypothesis in a variety of Large Language Models (LLMs), each input with natural-language descriptions of minimalist tasks from five different domains: arithmetic, visual scenes, family trees, metro maps and social interactions. Results show that the true semantic structures can be linearly recovered with a Polar Probe targeting a subspace of LLMs' layer activations. Second, this code emerges mostly in middle layers and improves with LLM performance. Third, these Polar Probes successfully generalize to new entities and relation types, but degrades with the size of the semantic structure. Finally, the quality of the polar representation correlates with the LLM's ability to answer questions about the semantic structure. Together, these findings suggest that LLMs learn to build complex semantic structures by binding representations with a simple geometrical principle.

cs.CL↗

arXiv2026

Multi-layer attentive probing improves transfer of audio representations for bioacoustics

Probing heads map the representations learned from audio by a machine learning model to downstream task labels and are a key component in evaluating representation learning. Most bioacoustic benchmarks use a fixed, low-capacity probe, such as a linear layer on the final encoder layer. While this standardization enables model comparisons, it may bias results by overlooking the interaction between encoder features and probe design. In this work, we systematically study different probing strategies across two bioacoustic benchmarks, BEANs and BirdSet. We evaluate last- and multi-layer probing, across linear and attention probes. We show that larger probe heads that leverage time information have superior performance. Our results suggest that current benchmarks may misrepresent encoder quality when relying on a last-layer probing setup. Multi-layer probing improves downstream task performance across all tested models, while attention probing has superior performance to linear probing for transformer models.

cs.SD↗

arXiv2026

Beyond the Baseband: Adaptive Multi-Band Encoding for Full-Spectrum Bioacoustics Classification

Animals hear and vocalize across frequency ranges that differ substantially from humans, often extending into the ultrasonic domain. Yet most computational bioacoustics systems rely on audio models pre-trained at 16 kHz, restricting their usable bandwidth to the 0-8 kHz baseband and discarding higher-frequency information present in many bioacoustic recordings. We investigate a multi-band encoding framework that decomposes the full spectrum of animal calls into band features and fuses them into a unified representation. Similarity analyses on models show that certain encoders produce decorrelated band embeddings that improve class separation after fusion. Classification experiments on three bioacoustic datasets using eight pre-trained models and five fusion strategies show that fused representations consistently outperform the baseband and time-expansion baselines on two datasets, showing the potential of multi-band methods for full-spectrum encoding of animal calls.

cs.LG↗

arXiv2026

BAGEL: Benchmarking Animal Knowledge Expertise in Language Models

Large language models have shown strong performance on broad-domain knowledge and reasoning benchmarks, but it remains unclear how well language models handle specialized animal-related knowledge under a unified closed-book evaluation protocol. We introduce BAGEL, a benchmark for evaluating animal knowledge expertise in language models. BAGEL is constructed from diverse scientific and reference sources, including bioRxiv, Global Biotic Interactions, Xeno-canto, and Wikipedia, using a combination of curated examples and automatically generated closed-book question-answer pairs. The benchmark covers multiple aspects of animal knowledge, including taxonomy, morphology, habitat, behavior, vocalization, geographic distribution, and species interactions. By focusing on closed-book evaluation, BAGEL measures animal-related knowledge of models without external retrieval at inference time. BAGEL further supports fine-grained analysis across source domains, taxonomic groups, and knowledge categories, enabling a more precise characterization of model strengths and systematic failure modes. Our benchmark provides a new testbed for studying domain-specific knowledge generalization in language models and for improving their reliability in biodiversity-related applications.

cs.CL↗

arXiv2026

DiscoPhon: Benchmarking the Unsupervised Discovery of Phoneme Inventories With Discrete Speech Units

We introduce DiscoPhon, a multilingual benchmark for evaluating unsupervised phoneme discovery from discrete speech units. DiscoPhon covers 6 dev and 6 test languages, chosen to span a wide range of phonemic contrasts. Given only 10 hours of speech in a previously unseen language, systems must produce discrete units that are mapped to a predefined phoneme inventory, through either a many-to-one or a one-to-one assignment. The resulting sequences are evaluated for unit quality, recognition and segmentation. We provide four pretrained multilingual HuBERT and SpidR baselines, and show that phonemic information is available enough in current models for derived units to correlate well with phonemes, though with variations across languages.

cs.CL↗

arXiv2026

Audio-to-Image Bird Species Retrieval without Audio-Image Pairs via Text Distillation

Audio-to-image retrieval offers an interpretable alternative to audio-only classification for bioacoustic species recognition, but learning aligned audio-image representations is challenging due to the scarcity of paired audio-image data. We propose a simple and data-efficient approach that enables audio-to-image retrieval without any audio-image supervision. Our proposed method uses text as a semantic intermediary: we distill the text embedding space of a pretrained image-text model (BioCLIP-2), which encodes rich visual and taxonomic structure, into a pretrained audio-text model (BioLingual) by fine-tuning its audio encoder with a contrastive objective. This distillation transfers visually grounded semantics into the audio representation, inducing emergent alignment between audio and image embeddings without using images during training. We evaluate the resulting model on multiple bioacoustic benchmarks. The distilled audio encoder preserves audio discriminative power while substantially improving audio-text alignment on focal recordings and soundscape datasets. Most importantly, on the SSW60 benchmark, the proposed approach achieves strong audio-to-image retrieval performance exceeding baselines based on zero-shot model combinations or learned mappings between text embeddings, despite not training on paired audio-image data. These results demonstrate that indirect semantic transfer through text is sufficient to induce meaningful audio-image alignment, providing a practical solution for visually grounded species recognition in data-scarce bioacoustic settings.

cs.SD↗

arXiv2026

Compact Hypercube Embeddings for Fast Text-based Wildlife Observation Retrieval

Large-scale biodiversity monitoring platforms increasingly rely on multimodal wildlife observations. While recent foundation models enable rich semantic representations across vision, audio, and language, retrieving relevant observations from massive archives remains challenging due to the computational cost of high-dimensional similarity search. In this work, we introduce compact hypercube embeddings for fast text-based wildlife observation retrieval, a framework that enables efficient text-based search over large-scale wildlife image and audio databases using compact binary representations. Building on the cross-view code alignment hashing framework, we extend lightweight hashing beyond a single-modality setup to align natural language descriptions with visual or acoustic observations in a shared Hamming space. Our approach leverages pretrained wildlife foundation models, including BioCLIP and BioLingual, and adapts them efficiently for hashing using parameter-efficient fine-tuning. We evaluate our method on large-scale benchmarks, including iNaturalist2024 for text-to-image retrieval and iNatSounds2024 for text-to-audio retrieval, as well as multiple soundscape datasets to assess robustness under domain shift. Results show that retrieval using discrete hypercube embeddings achieves competitive, and in several cases superior, performance compared to continuous embeddings, while drastically reducing memory and search cost. Moreover, we observe that the hashing objective consistently improves the underlying encoder representations, leading to stronger retrieval and zero-shot generalization. These results demonstrate that binary, language-based retrieval enables scalable and efficient search over large wildlife archives for biodiversity monitoring systems.

cs.IR↗

arXiv2025

Biasless Language Models Learn Unnaturally: How LLMs Fail to Distinguish the Possible from the Impossible

Are large language models (LLMs) sensitive to the distinction between humanly possible and impossible languages? This question was recently used in a broader debate on whether LLMs and humans share the same innate learning biases. Previous work has answered it in the positive by comparing LLM learning curves on existing language datasets and on "impossible" datasets derived from them via various perturbation functions. Using the same methodology, we examine this claim on a wider set of languages and impossible perturbations. We find that in most cases, GPT-2 learns each language and its impossible counterpart equally easily, in contrast to previous findings. We also apply a more lenient condition by testing whether GPT-2 provides any kind of separation between the whole sets of natural vs. impossible languages, based on cross-linguistic variance in metrics derived from the learning curves. Taken together, these perspectives show that GPT-2 provides no systematic separation between the possible and the impossible.

cs.CL↗

arXiv2025

AVEX: What Matters for Animal Vocalization Encoding

Bioacoustics, the study of sounds produced by living organisms, plays a vital role in conservation, biodiversity monitoring, and behavioral studies. Many tasks in this field, such as species, individual, and behavior classification and detection, are well-suited to machine learning. However, they often suffer from limited annotated data, highlighting the need for a general-purpose bioacoustic encoder capable of extracting useful representations for diverse downstream tasks. Such encoders have been proposed before, but are often limited in scope due to a focus on a narrow range of species (typically birds), and a reliance on a single model architecture or training paradigm. Moreover, they are usually evaluated on a small set of tasks and datasets. In this work, we present a large-scale empirical study that covers aspects of bioacoustics that are relevant to research but have previously been scarcely considered: training data diversity and scale, model architectures and training recipes, and the breadth of evaluation tasks and datasets. We obtain encoders that are state-of-the-art on the existing and proposed benchmarks. We also identify what matters for training these encoders, such that this work can be extended when more data are available or better architectures are proposed. Specifically, across 26 datasets with tasks including species classification, detection, individual ID, and vocal repertoire discovery, we find self-supervised pre-training followed by supervised post-training on a mixed bioacoustics + general-audio corpus yields the strongest in- and out-of-distribution performance. We show the importance of data diversity in both stages. To support ongoing research and application, we will release the model checkpoints.

cs.SD↗

arXiv2025

Probing Syntax in Large Language Models: Successes and Remaining Challenges

The syntactic structures of sentences can be readily read-out from the activations of large language models (LLMs). However, the ``structural probes'' that have been developed to reveal this phenomenon are typically evaluated on an indiscriminate set of sentences. Consequently, it remains unclear whether structural and/or statistical factors systematically affect these syntactic representations. To address this issue, we conduct an in-depth analysis of structural probes on three controlled benchmarks. Our results are three-fold. First, structural probes are biased by a superficial property: the closer two words are in a sentence, the more likely structural probes will consider them as syntactically linked. Second, structural probes are challenged by linguistic properties: they poorly represent deep syntactic structures, and get interfered by interacting nouns or ungrammatical verb forms. Third, structural probes do not appear to be affected by the predictability of individual words. Overall, this work sheds light on the current challenges faced by structural probes. Providing a benchmark made of controlled stimuli to better evaluate their performance.

cs.CL↗

arXiv2025

A Neural Model for Word Repetition

It takes several years for the developing brain of a baby to fully master word repetition-the task of hearing a word and repeating it aloud. Repeating a new word, such as from a new language, can be a challenging task also for adults. Additionally, brain damage, such as from a stroke, may lead to systematic speech errors with specific characteristics dependent on the location of the brain damage. Cognitive sciences suggest a model with various components for the different processing stages involved in word repetition. While some studies have begun to localize the corresponding regions in the brain, the neural mechanisms and how exactly the brain performs word repetition remain largely unknown. We propose to bridge the gap between the cognitive model of word repetition and neural mechanisms in the human brain by modeling the task using deep neural networks. Neural models are fully observable, allowing us to study the detailed mechanisms in their various substructures and make comparisons with human behavior and, ultimately, the brain. Here, we make first steps in this direction by: (1) training a large set of models to simulate the word repetition task; (2) creating a battery of tests to probe the models for known effects from behavioral studies in humans, and (3) simulating brain damage through ablation studies, where we systematically remove neurons from the model, and repeat the behavioral study to examine the resulting speech errors in the "patient" model. Our results show that neural models can mimic several effects known from human research, but might diverge in other aspects, highlighting both the potential and the challenges for future research aimed at developing human-like neural models.

cs.CL↗

arXiv2025

A Minimum Description Length Approach to Regularization in Neural Networks

State-of-the-art neural networks can be trained to become remarkable solutions to many problems. But while these architectures can express symbolic, perfect solutions, trained models often arrive at approximations instead. We show that the choice of regularization method plays a crucial role: when trained on formal languages with standard regularization ($L_1$, $L_2$, or none), expressive architectures not only fail to converge to correct solutions but are actively pushed away from perfect initializations. In contrast, applying the Minimum Description Length (MDL) principle to balance model complexity with data fit provides a theoretically grounded regularization method. Using MDL, perfect solutions are selected over approximations, independently of the optimization algorithm. We propose that unlike existing regularization techniques, MDL introduces the appropriate inductive bias to effectively counteract overfitting and promote generalization.

cs.LG↗

arXiv2025

fastabx: A library for efficient computation of ABX discriminability

We introduce fastabx, a high-performance Python library for building ABX discrimination tasks. ABX is a measure of the separation between generic categories of interest. It has been used extensively to evaluate phonetic discriminability in self-supervised speech representations. However, its broader adoption has been limited by the absence of adequate tools. fastabx addresses this gap by providing a framework capable of constructing any type of ABX task while delivering the efficiency necessary for rapid development cycles, both in task creation and in calculating distances between representations. We believe that fastabx will serve as a valuable resource for the broader representation learning community, enabling researchers to systematically investigate what information can be directly extracted from learned representations across several domains beyond speech processing. The source code is available at https://github.com/bootphon/fastabx.

cs.CL↗

arXiv2025

Large Language Models as Proxies for Theories of Human Linguistic Cognition

We consider the possible role of current large language models (LLMs) in the study of human linguistic cognition. We focus on the use of such models as proxies for theories of cognition that are relatively linguistically-neutral in their representations and learning but differ from current LLMs in key ways. We illustrate this potential use of LLMs as proxies for theories of cognition in the context of two kinds of questions: (a) whether the target theory accounts for the acquisition of a given pattern from a given corpus; and (b) whether the target theory makes a given typologically-attested pattern easier to acquire than another, typologically-unattested pattern. For each of the two questions we show, building on recent literature, how current LLMs can potentially be of help, but we note that at present this help is quite limited.

cs.CL↗

arXiv2024

Disentanglement and Compositionality of Letter Identity and Letter Position in Variational Auto-Encoder Vision Models

Human readers can accurately count how many letters are in a word (e.g., 7 in ``buffalo''), remove a letter from a given position (e.g., ``bufflo'') or add a new one. The human brain of readers must have therefore learned to disentangle information related to the position of a letter and its identity. Such disentanglement is necessary for the compositional, unbounded, ability of humans to create and parse new strings, with any combination of letters appearing in any positions. Do modern deep neural models also possess this crucial compositional ability? Here, we tested whether neural models that achieve state-of-the-art on disentanglement of features in visual input can also disentangle letter position and letter identity when trained on images of written words. Specifically, we trained beta variational autoencoder ($\beta$-VAE) to reconstruct images of letter strings and evaluated their disentanglement performance using CompOrth - a new benchmark that we created for studying compositional learning and zero-shot generalization in visual models for orthography. The benchmark suggests a set of tests, of increasing complexity, to evaluate the degree of disentanglement between orthographic features of written words in deep neural models. Using CompOrth, we conducted a set of experiments to analyze the generalization ability of these models, in particular, to unseen word length and to unseen combinations of letter identities and letter positions. We found that while models effectively disentangle surface features, such as horizontal and vertical `retinal' locations of words within an image, they dramatically fail to disentangle letter position and letter identity and lack any notion of word length. Together, this study demonstrates the shortcomings of state-of-the-art $\beta$-VAE models compared to humans and proposes a new challenge and a corresponding benchmark to evaluate neural models.

cs.CV↗

arXiv2024

A polar coordinate system represents syntax in large language models

Originally formalized with symbolic representations, syntactic trees may also be effectively represented in the activations of large language models (LLMs). Indeed, a 'Structural Probe' can find a subspace of neural activations, where syntactically related words are relatively close to one-another. However, this syntactic code remains incomplete: the distance between the Structural Probe word embeddings can represent the existence but not the type and direction of syntactic relations. Here, we hypothesize that syntactic relations are, in fact, coded by the relative direction between nearby embeddings. To test this hypothesis, we introduce a 'Polar Probe' trained to read syntactic relations from both the distance and the direction between word embeddings. Our approach reveals three main findings. First, our Polar Probe successfully recovers the type and direction of syntactic relations, and substantially outperforms the Structural Probe by nearly two folds. Second, we confirm that this polar coordinate system exists in a low-dimensional subspace of the intermediate layers of many LLMs and becomes increasingly precise in the latest frontier models. Third, we demonstrate with a new benchmark that similar syntactic relations are coded similarly across the nested levels of syntactic trees. Overall, this work shows that LLMs spontaneously learn a geometry of neural activations that explicitly represents the main symbolic structures of linguistic theory.

cs.CL↗

arXiv2024

Improving Spoken Language Modeling with Phoneme Classification: A Simple Fine-tuning Approach

Recent progress in Spoken Language Modeling has shown that learning language directly from speech is feasible. Generating speech through a pipeline that operates at the text level typically loses nuances, intonations, and non-verbal vocalizations. Modeling directly from speech opens up the path to more natural and expressive systems. On the other hand, speech-only systems require up to three orders of magnitude more data to catch up to their text-based counterparts in terms of their semantic abilities. We show that fine-tuning speech representation models on phoneme classification leads to more context-invariant representations, and language models trained on these units achieve comparable lexical comprehension to ones trained on hundred times more data.

cs.CL↗