arXiv subjects

Ercan Engin Kuruoglu

Publications and source records attributed to Ercan Engin Kuruoglu.

At least 19 recordsLinked to original sources

arXiv2026

Cross-Sign Language Transfer Learning Using Domain Adaptation with Multi-scale Temporal Alignment

Sign language serves as a vital means of communication for individuals with hearing impairments, yet recognition resources for the over 100 distinct sign languages are severely lacking. In response, we present our work on sign language recognition using transfer learning and the domain adaptation method TA3N, which utilizes the Temporal Relational Network (TRN) module for aligning multi-scale temporal relations. Our findings highlight the superior performance of Domain Adaptation to neural network-based transfer learning, particularly in improving recognition of American Sign Language (ASL). Our research also identifies the effectiveness of aligning shorter-term temporal features between source and target domains. In addition to using RGB, we conducted experiments using Optical Flow mode for the sign language samples, ultimately determining that RGB outperforms Optical Flow in the majority of cases. Our work aims to improve accessibility and communication for individuals who rely on sign language as their primary mode of communication.

cs.AI↗

arXiv2026

Function-Space Empirical Bayes Regularisation with Student's t Priors

Bayesian deep learning (BDL) has emerged as a principled approach to produce reliable uncertainty estimates by integrating deep neural networks with Bayesian inference, and the selection of informative prior distributions remains a significant challenge. Various function-space variational inference (FSVI) regularisation methods have been presented, assigning meaningful priors over model predictions. However, these methods typically rely on a Gaussian prior, which fails to capture the heavy-tailed statistical characteristics inherent in neural network outputs. By contrast, this work proposes a novel function-space empirical Bayes regularisation framework -- termed ST-FS-EB -- which employs heavy-tailed Student's $t$ priors in both parameter and function spaces. Also, we approximate the posterior distribution through variational inference (VI), inducing an evidence lower bound (ELBO) objective based on Monte Carlo (MC) dropout. Furthermore, the proposed method is evaluated against various VI-based BDL baselines, and the results demonstrate its robust performance in in-distribution prediction, out-of-distribution (OOD) detection and handling distribution shifts.

cs.LG↗

arXiv2026

Function-Space Empirical Bayes Regularisation with Large Vision-Language Model Priors

Bayesian deep learning (BDL) provides a principled framework for reliable uncertainty quantification by combining deep neural networks with Bayesian inference. A central challenge in BDL lies in the design of informative prior distributions that scale effectively to high-dimensional data. Recent functional variational inference (VI) approaches address this issue by imposing priors directly in function space; however, most existing methods rely on Gaussian process (GP) priors, whose expressiveness and generalisation capabilities become limited in high-dimensional regimes. In this work, we propose VLM-FS-EB, a novel function-space empirical Bayes regularisation framework, leveraging large vision-language models (VLMs) to generates semantically meaningful context points. These synthetic samples are then used VLMs for embeddings to construct expressive functional priors. Furthermore, the proposed method is evaluated against various baselines, and experimental results demonstrate that our method consistently improves predictive performance and yields more reliable uncertainty estimates, particularly in out-of-distribution (OOD) detection tasks and data-scarce regimes.

cs.LG↗

arXiv2025

ParaFormer: A Generalized PageRank Graph Transformer for Graph Representation Learning

Graph Transformers (GTs) have emerged as a promising graph learning tool, leveraging their all-pair connected property to effectively capture global information. To address the over-smoothing problem in deep GNNs, global attention was initially introduced, eliminating the necessity for using deep GNNs. However, through empirical and theoretical analysis, we verify that the introduced global attention exhibits severe over-smoothing, causing node representations to become indistinguishable due to its inherent low-pass filtering. This effect is even stronger than that observed in GNNs. To mitigate this, we propose PageRank Transformer (ParaFormer), which features a PageRank-enhanced attention module designed to mimic the behavior of deep Transformers. We theoretically and empirically demonstrate that ParaFormer mitigates over-smoothing by functioning as an adaptive-pass filter. Experiments show that ParaFormer achieves consistent performance improvements across both node classification and graph classification tasks on 11 datasets ranging from thousands to millions of nodes, validating its efficacy. The supplementary material, including code and appendix, can be found in https://github.com/chaohaoyuan/ParaFormer.

cs.LG↗

arXiv2025

Monte Carlo Functional Regularisation for Continual Learning

Continual learning (CL) is crucial for the adaptation of neural network models to new environments. Although outperforming weight-space regularisation approaches, the functional regularisation-based CL methods suffer from high computational costs and large linear approximation errors. In this work, we present a new functional regularisation CL framework, called MCFRCL, which approximates model prediction distributions by Monte Carlo (MC) sampling. Moreover, three continuous distributions are leveraged to capture the statistical characteristics of the MC samples via moment-based methods. Additionally, both the Wasserstein distance and the Kullback-Leibler (KL) distance are employed to construct the regularisation function. The proposed MCFRCL is evaluated against multiple benchmark methods on the MNIST and CIFAR datasets, with simulation results highlighting its effectiveness in both prediction accuracy and training efficiency.

cs.LG↗

arXiv2025

BrainNetMLP: An Efficient and Effective Baseline for Functional Brain Network Classification

Recent studies have made great progress in functional brain network classification by modeling the brain as a network of Regions of Interest (ROIs) and leveraging their connections to understand brain functionality and diagnose mental disorders. Various deep learning architectures, including Convolutional Neural Networks, Graph Neural Networks, and the recent Transformer, have been developed. However, despite the increasing complexity of these models, the performance gain has not been as salient. This raises a question: Does increasing model complexity necessarily lead to higher classification accuracy? In this paper, we revisit the simplest deep learning architecture, the Multi-Layer Perceptron (MLP), and propose a pure MLP-based method, named BrainNetMLP, for functional brain network classification, which capitalizes on the advantages of MLP, including efficient computation and fewer parameters. Moreover, BrainNetMLP incorporates a dual-branch structure to jointly capture both spatial connectivity and spectral information, enabling precise spatiotemporal feature fusion. We evaluate our proposed BrainNetMLP on two public and popular brain network classification datasets, the Human Connectome Project (HCP) and the Autism Brain Imaging Data Exchange (ABIDE). Experimental results demonstrate pure MLP-based methods can achieve state-of-the-art performance, revealing the potential of MLP-based models as more efficient yet effective alternatives in functional brain network classification. The code will be available at https://github.com/JayceonHo/BrainNetMLP.

q-bio.NC↗

arXiv2025

Uncertainty Quantification With Noise Injection in Neural Networks: A Bayesian Perspective

Model uncertainty quantification involves measuring and evaluating the uncertainty linked to a model's predictions, helping assess their reliability and confidence. Noise injection is a technique used to enhance the robustness of neural networks by introducing randomness. In this paper, we establish a connection between noise injection and uncertainty quantification from a Bayesian standpoint. We theoretically demonstrate that injecting noise into the weights of a neural network is equivalent to Bayesian inference on a deep Gaussian process. Consequently, we introduce a Monte Carlo Noise Injection (MCNI) method, which involves injecting noise into the parameters during training and performing multiple forward propagations during inference to estimate the uncertainty of the prediction. Through simulation and experiments on regression and classification tasks, our method demonstrates superior performance compared to the baseline model.

stat.ML↗

arXiv2025

ASD Classification on Dynamic Brain Connectome using Temporal Random Walk with Transformer-based Dynamic Network Embedding

Autism Spectrum Disorder (ASD) is a complex neurological condition characterized by varied developmental impairments, especially in communication and social interaction. Accurate and early diagnosis of ASD is crucial for effective intervention, which is enhanced by richer representations of brain activity. The brain functional connectome, which refers to the statistical relationships between different brain regions measured through neuroimaging, provides crucial insights into brain function. Traditional static methods often fail to capture the dynamic nature of brain activity, in contrast, dynamic brain connectome analysis provides a more comprehensive view by capturing the temporal variations in the brain. We propose BrainTWT, a novel dynamic network embedding approach that captures temporal evolution of the brain connectivity over time and considers also the dynamics between different temporal network snapshots. BrainTWT employs temporal random walks to capture dynamics across different temporal network snapshots and leverages the Transformer's ability to model long term dependencies in sequential data to learn the discriminative embeddings from these temporal sequences using temporal structure prediction tasks. The experimental evaluation, utilizing the Autism Brain Imaging Data Exchange (ABIDE) dataset, demonstrates that BrainTWT outperforms baseline methods in ASD classification.

cs.LG↗

arXiv2025

Spatio-Temporal Graph Structure Learning for Earthquake Detection

Earthquake detection is essential for earthquake early warning (EEW) systems. Traditional methods struggle with low signal-to-noise ratios and single-station reliance, limiting their effectiveness. We propose a Spatio-Temporal Graph Convolutional Network (GCN) using Spectral Structure Learning Convolution (Spectral SLC) to model static and dynamic relationships across seismic stations. Our approach processes multi-station waveform data and generates station-specific detection probabilities. Experiments show superior performance over a conventional GCN baseline in terms of true positive rate (TPR) and false positive rate (FPR), highlighting its potential for robust multi-station earthquake detection. The code repository for this study is available at https://github.com/SuchanunP/eq_detector.

cs.LG↗

arXiv2025

Unifying Structural Proximity and Equivalence for Enhanced Dynamic Network Embedding

Dynamic network embedding methods transform nodes in a dynamic network into low-dimensional vectors while preserving network characteristics, facilitating tasks such as node classification and community detection. Several embedding methods have been proposed to capture structural proximity among nodes in a network, where densely connected communities are preserved, while others have been proposed to preserve structural equivalence among nodes, capturing their structural roles regardless of their relative distance in the network. However, most existing methods that aim to preserve both network characteristics mainly focus on static networks and those designed for dynamic networks do not explicitly account for inter-snapshot structural properties. This paper proposes a novel unifying dynamic network embedding method that simultaneously preserves both structural proximity and equivalence while considering inter-snapshot structural relationships in a dynamic network. Specifically, to define structural equivalence in a dynamic network, we use temporal subgraphs, known as dynamic graphlets, to capture how a node's neighborhood structure evolves over time. We then introduce a temporal-structural random walk to flexibly sample time-respecting sequences of nodes, considering both their temporal proximity and similarity in evolving structures. The proposed method is evaluated using five real-world networks on node classification where it outperforms benchmark methods, showing its effectiveness and flexibility in capturing various aspects of a network.

cs.SI↗

arXiv2025

A Survey of Graph Transformers: Architectures, Theories and Applications

Graph Transformers (GTs) have demonstrated a strong capability in modeling graph structures by addressing the intrinsic limitations of graph neural networks (GNNs), such as over-smoothing and over-squashing. Recent studies have proposed diverse architectures, enhanced explainability, and practical applications for Graph Transformers. In light of these rapid developments, we conduct a comprehensive review of Graph Transformers, covering aspects such as their architectures, theoretical foundations, and applications. In this survey, we first categorize the architecture of Graph Transformers according to their strategies for processing structural information, including graph tokenization, positional encoding, structure-aware attention, and model ensemble. Then, from the theoretical perspective, we examine the expressivity of Graph Transformers in various discussed architectures and contrast them with other advanced graph learning algorithms to discover their connections. For applications, we organize the literature around four graph organization forms, from relational, geometric, dynamic to heterogeneous. A Practical Guidance table then maps architectural components to these graph forms by adoption frequency, so practitioners can narrow down which design families to consider for a given input structure. Lastly, we will discuss the current challenges and prospective directions in Graph Transformers for potential future research.

cs.LG↗

arXiv2024

Signal Processing over Time-Varying Graphs: A Systematic Review

As irregularly structured data representations, graphs have received a large amount of attention in recent years and have been widely applied to various real-world scenarios such as social, traffic, and energy settings. Compared to non-graph algorithms, numerous graph-based methodologies benefited from the strong power of graphs for representing high-dimensional and non-Euclidean data. In the field of Graph Signal Processing (GSP), analogies of classical signal processing concepts, such as shifting, convolution, filtering, and transformations are developed. However, many GSP techniques usually postulate the graph is static in both signal and typology. This assumption hinders the effectiveness of GSP methodologies as the assumption ignores the time-varying properties in numerous real-world systems. For example, in the traffic network, the signal on each node varies over time and contains underlying temporal correlation and patterns worthy of analysis. To tackle this challenge, more and more work are being done recently to investigate the processing of time-varying graph signals. They cope with time-varying challenges from three main directions: 1) graph time-spectral filtering, 2) multi-variate time-series forecasting, and 3) spatiotemporal graph data mining by neural networks, where non-negligible progress has been achieved. Despite the success of signal processing and learning over time-varying graphs, there is no survey to compare and conclude the current methodology for GSP and graph learning. To compensate for this, in this paper, we aim to review the development and recent progress on signal processing and learning over time-varying graphs, and compare their advantages and disadvantages from both the methodological and experimental side, to outline the challenges and potential research directions for future research.

eess.SP↗

arXiv2024

Bayesian Neural Networks: A Min-Max Game Framework

In deep learning, Bayesian neural networks (BNN) provide the role of robustness analysis, and the minimax method is used to be a conservative choice in the traditional Bayesian field. In this paper, we study a conservative BNN with the minimax method and formulate a two-player game between a deterministic neural network $f$ and a sampling stochastic neural network $f + r*ξ$. From this perspective, we understand the closed-loop neural networks with the minimax loss and reveal their connection to the BNN. We test the models on simple data sets, study their robustness under noise perturbation, and report some issues for searching $r$.

cs.LG↗

arXiv2024

Graph Frequency Features of Cancer Gene Co-Expression Networks

Complex gene interactions play a significant role in cancer progression, driving cellular behaviors that contribute to tumor growth, invasion, and metastasis. Gene co-expression networks model the functional connectivity between genes under various biological conditions. Understanding the system-level evolution of these networks in cancer is critical for elucidating disease mechanisms and informing the development of targeted therapies. While previous studies have primarily focused on structural differences between cancer and normal cell co-expression networks, this study applies graph frequency analysis to cancer transcriptomic signals defined on gene co-expression networks, highlighting the graph spectral characteristics of cancer systems. Using a range of graph frequency filters, we showed that cancer cells display distinctive patterns in the graph frequency content of their gene transcriptomic signals, effectively distinguishing between cancer types and stages. The transformation of the original gene feature space into the graph spectral space captured more intricate cancer properties, as validated by significantly higher F-statistic scores for graph frequency-filtered gene features compared to those in the original space.

q-bio.MN↗

arXiv2024

LLM Online Spatial-temporal Signal Reconstruction Under Noise

This work introduces the LLM Online Spatial-temporal Reconstruction (LLM-OSR) framework, which integrates Graph Signal Processing (GSP) and Large Language Models (LLMs) for online spatial-temporal signal reconstruction. The LLM-OSR utilizes a GSP-based spatial-temporal signal handler to enhance graph signals and employs LLMs to predict missing values based on spatiotemporal patterns. The performance of LLM-OSR is evaluated on traffic and meteorological datasets under varying Gaussian noise levels. Experimental results demonstrate that utilizing GPT-4-o mini within the LLM-OSR is accurate and robust under Gaussian noise conditions. The limitations are discussed along with future research insights, emphasizing the potential of combining GSP techniques with LLMs for solving spatiotemporal prediction tasks.

cs.LG↗

arXiv2024

Time-varying Graph Signal Estimation via Dynamic Multi-hop Topologies

The assumption of using a static graph to represent multivariate time-varying signals oversimplifies the complexity of modeling their interactions over time. We propose a Dynamic Multi-hop model that captures dynamic interactions among time-varying node signals, while also accounting for time-varying edge signals, by extracting latent edges through topological diffusion and edge pruning. The resulting graphs are time-varying and sparse, capturing key dynamic node interactions and representing signal diffusion to both near and distant neighbors over time. The Dynamic Multi-hop Estimation algorithm is further proposed, accurately representing the interaction dynamics among node signals while enabling adaptive estimation of time-varying multivariate signals spatially and temporally. The Dynamic Multi-hop Estimation is evaluated under two real-world datasets of brain network and stock market for the online estimation of partially observed time-varying signals corrupted by noise.

eess.SP↗

arXiv2024

Graph Signal Adaptive Message Passing

This paper proposes Graph Signal Adaptive Message Passing (GSAMP), a novel message passing method that simultaneously conducts online prediction, missing data imputation, and noise removal on time-varying graph signals. Unlike conventional Graph Signal Processing methods that apply the same filter to the entire graph, the spatiotemporal updates of GSAMP employ a distinct approach that utilizes localized computations at each node. This update is based on an adaptive solution obtained from an optimization problem designed to minimize the discrepancy between observed and estimated values. GSAMP effectively processes real-world, time-varying graph signals under Gaussian and impulsive noise conditions.

eess.SP↗

arXiv2024

Topological and Graph Theoretical Analysis of Dynamic Functional Connectivity for Autism Spectrum Disorder

Autism Spectrum Disorder (ASD) is a prevalent neurological disorder. However, the multi-faceted symptoms and large individual differences among ASD patients are hindering the diagnosis process, which largely relies on subject descriptions and lacks quantitative biomarkers. To remediate such problems, this paper explores the use of graph theory and topological data analysis (TDA) to study brain activity in ASD patients and normal controls. We employ the Mapper algorithm in TDA and the distance correlation graphical model (DCGM) in graph theory to create brain state networks, then innovatively adopt complex network metrics in Graph signal processing (GSP) and physical quantities to analyze brain activities over time. Our findings reveal statistical differences in network characteristics between ASD and control groups. Compared to normal subjects, brain state networks of ASD patients tend to have decreased modularity, higher von Neumann entropy, increased Betti-0 numbers, and decreased Betti-1 numbers. These findings attest to the biological traits of ASD, suggesting less organized and more variable brain dynamics. These findings offer potential biomarkers for ASD diagnosis and deepen our understanding of its neural correlations.

q-bio.NC↗