arXiv subjects

Eric Lauga

Publications and source records attributed to Eric Lauga.

At least 91 records · Page 5Linked to original sources

arXiv2019

Stresslets induced by active swimmers

Active particles disturb the fluid around them as force dipoles, or stresslets, which govern their collective dynamics. Unlike swimming speeds, the stresslets of active particles are rarely determined due to the lack of a suitable theoretical framework for arbitrary geometry. We propose a general method, based on the reciprocal theorem of Stokes flows, to compute stresslets as integrals of the velocities on the particle's surface, which we illustrate for spheroidal chemically-active particles. Our method will allow tuning the stresslet of artificial swimmers and tailoring their collective motion in complex environments.

physics.flu-dyn↗

arXiv2019

A stochastic model for bacteria-driven micro-swimmers

Experiments have recently shown the feasibility of utilising bacteria as micro-scale robotic devices, with special attention paid to the development of bacteria-driven micro-swimmers taking advantage of built-in actuation and sensing mechanisms of cells. Here we propose a stochastic fluid dynamic model to describe analytically and computationally the dynamics of microscopic particles driven by the motion of surface-attached bacteria undergoing run-and-tumble motion. We compute analytical expressions for the rotational diffusion coefficient, the swimming speed and the effective diffusion coefficient. At short times, the mean squared displacement (MSD) is proportional to the square of the swimming speed, which is independent of the particle size (for fixed density of attached bacteria) and scales linearly with the number of attached bacteria; in contrast, at long times the MSD scales quadratically with the size of the swimmer and is independent of the number of bacteria. We then extend our result to the situation where the surface-attached bacteria undergo chemotaxis within the linear response regime. We demonstrate that bacteria-driven particles are capable of performing artificial chemotaxis, with a chemotactic drift velocity linear in the chemical concentration gradient and independent of the size of the particle. Our results are validated against numerical simulations in the Brownian dynamics limit and will be relevant to the optimal design of micro-swimmers for biomedical applications.

cond-mat.soft↗

arXiv2019

The near and far of a pair of magnetic capillary disks

Control on microscopic scales depends critically on our ability to manipulate interactions with different physical fields. The creation of micro-machines therefore requires us to understand how multiple fields, such as surface capillary or electro-magnetic, can be used to produce predictable behaviour. Recently, a spinning micro-raft system was developed that exhibited both static and dynamic self-assembly [Wang et al. (2017) Sci. Adv. 3, e1602522]. These rafts employed both capillary and magnetic interactions and, at a critical driving frequency, would suddenly change from stable orbital patterns to static assembled structures. In this paper, we explain the dynamics of two interacting micro-rafts through a combination of theoretical models and experiments. This is first achieved by identifying the governing physics of the orbital patterns, the assembled structures, and the collapse separately. We find that the orbital patterns are determined by the short range capillary interactions between the disks, while the explanations of the other two behaviours only require the capillary far field. Finally we combine the three models to explain the dynamics of a new micro-raft experiment.

cond-mat.soft↗

arXiv2018

Viscous growth and rebound of a bubble near a rigid surface

Motivated by the dynamics of microbubbles near catalytic surfaces in bubble-powered microrockets, we consider theoretically the growth of a free spherical bubble near a flat no-slip surface in a Stokes flow. The flow at the bubble surface is characterised by a constant slip length allowing to tune the hydrodynamic mobility of its surface and tackle in one formulation both clean and contaminated bubbles as well as rigid shells. Starting with a bubble of infinitesimal size, the fluid flow and hydrodynamic forces on the growing bubble are obtained analytically. We demonstrate that, depending on the value of the bubble slip length relative to the initial distance to the wall, the bubble will either monotonically drain the fluid separating it from the wall, which will exponentially thin, or it will bounce off the surface once before eventually draining the thin film. Clean bubbles are shown to be a singular limit who always monotonically get repelled from the surface. The bouncing events for bubbles with finite slip lengths are further analysed in detail in the lubrication limit. In particular, we identify the origin of the reversal of the hydrodynamic force direction as due to the change in the flow pattern in the film between the bubble and the surface and to the associated lubrication pressure. Finally, the final drainage dynamics of the film is observed to follow a universal algebraic scaling for all finite slip lengths.

physics.flu-dyn↗

arXiv2018

Hydrodynamics of bacteriophage migration along bacterial flagella

Bacteriophage viruses, one of the most abundant entities in our planet, lack the ability to move independently. Instead, they crowd fluid environments in anticipation of a random encounter with a bacterium. Once they land on the cell body of their victim, they are able to eject their genetic material inside the host cell. Many phage species, however, first attach to the flagellar filaments of bacteria. Being immotile, these so-called flagellotropic phages still manage to reach the cell body for infection, and the process by which they move up the flagellar filament has intrigued the scientific community for decades. In 1973, Berg and Anderson (Nature, 245, 380) proposed the nut-and-bolt mechanism in which, similarly to a rotated nut that is able to move along a bolt, the phage wraps itself around a flagellar filament possessing helical grooves (due to the helical rows of flagellin molecules) and exploits the rotation of the flagellar filament in order to passively travel along it. One of the main evidence for this mechanism is the fact that mutants of bacterial species such as Escherichia coli and Salmonella typhimurium that possess straight flagellar filaments with a preserved helical groove structure can still be infected by their relative phages. Using two distinct approaches to address the short-range interactions between phages and flagellar filaments, we provide here a first-principle theoretical model for the nut-and-bolt mechanism applicable to mutants possessing straight flagellar filaments. Our model is fully analytical, is able to predict the speed of translocation of a bacteriophage along a flagellar filament as a function of the geometry of both phage and bacterium, the rotation rate of the flagellar filament, and the handedness of the helical grooves, and is consistent with past experimental observations.

physics.bio-ph↗

arXiv2018

The swimming of a deforming helix

Many microorganisms and artificial microswimmers use helical appendages in order to generate locomotion. Though often rotated so as to produce thrust, some species of bacteria such Spiroplasma, Rhodobacter sphaeroides and Spirochetes induce movement by deforming a helical-shaped body. Recently, artificial devices have been created which also generate motion by deforming their helical body in a non-reciprocal way (Mourran et al., Adv. Mater., 29, 1604825, 2017). Inspired by these systems, we investigate the transport of a deforming helix within a viscous fluid. Specifically, we consider a swimmer that maintains a helical centreline and a single handedness while changing its helix radius, pitch and wavelength uniformly across the body. We first discuss how a deforming helix can create a non-reciprocal translational and rotational swimming stroke and identify its principle direction of motion. We then determine the leading-order physics for helices with small helix radius before considering the general behaviour for different configuration parameters and how these swimmers can be optimised. Finally, we explore how the presence of walls, gravity, and defects in the centreline allow the helical device to break symmetries, increase its speed, and generate transport in directions not available to helices in bulk fluids.

physics.bio-ph↗

arXiv2018

Artificial chemotaxis of phoretic swimmers: Instantaneous and long-time behaviour

Phoretic swimmers are a class of artificial active particles that has received significant attention in recent years. By making use of self-generated gradients (e.g. in temperature, electric potential or some chemical product) phoretic swimmers are capable of self-propulsion without the complications of mobile body parts or a controlled external field. Focusing on diffusiophoresis, we quantify in this paper the mechanisms through which phoretic particles may achieve chemotaxis, both at the individual and the non-interacting population level. We first derive a fully analytical law for the instantaneous propulsion and orientation of a phoretic swimmer with general axisymmetric surface properties, in the limit of zero Péclet number and small Damköhler number. We then apply our results to the case of a Janus sphere, one of the most common designs of phoretic swimmers used in experimental studies. We next put forward a novel application of generalised Taylor dispersion theory in order to characterise the long-time behaviour of a population of non-interacting phoretic swimmers. We compare our theoretical results with numerical simulations for the mean drift and anisotropic diffusion of phoretic swimmers in chemical gradients. Our results will help inform the design of phoretic swimmers in future experimental applications.

cond-mat.soft↗

arXiv2018

Computing the motor torque of Escherichia coli

The rotary motor of bacteria is a natural nano-technological marvel that enables cell locomotion by powering the rotation of semi-rigid helical flagellar filaments in fluid environments. It is well known that the motor operates essentially at constant torque in counter-clockwise direction but past work have reported a large range of values of this torque. Focusing on Escherichia coli cells that are swimming and cells that are stuck on a glass surface for which all geometrical and environmental parameters are known (Darnton et al., J. Bacteriology, 2007, 189, 1756-1764), we use two validated numerical methods to compute the value of the motor torque consistent with experiments. Specifically, we use (and compare) a numerical method based on the boundary integral representation of Stokes flow and also develop a hybrid method combining boundary element and slender body theory to model the cell body and flagellar filament, respectively. Using measured rotation speed of the motor, our computations predict a value of the motor torque in the range 440 pNnm to 829 pNnm, depending critically on the distance between the flagellar filaments and the nearby surface.

physics.bio-ph↗

arXiv2018

The boundary integral formulation of Stokes flows includes slender-body theory

The incompressible Stokes equations can classically be recast in a boundary integral (BI) representation, which provides a general method to solve low-Reynolds number problems analytically and computationally. Alternatively, one can solve the Stokes equations by using an appropriate distribution of flow singularities of the right strength within the boundary, a method particularly useful to describe the dynamics of long slender objects for which the numerical implementation of the BI representation becomes cumbersome. While the BI approach is a mathematical consequence of the Stokes equations, the singularity method involves making judicious guesses that can only be justified a posteriori. In this paper we use matched asymptotic expansions to derive an algebraically accurate slender-body theory directly from the BI representation able to handle arbitrary surface velocities and surface tractions. This expansion procedure leads to sets of uncoupled linear equations and to a single one-dimensional integral equation identical to that derived by Keller and Rubinow (1976) and Johnson (1979) using the singularity method. Hence we show that it is a mathematical consequence of the BI approach that the leading-order flow around a slender body can be represented using a distribution of singularities along its centreline. Furthermore when derived from either the single-layer or double-layer modified BI representation, general slender solutions are only possible in certain types of flow, in accordance with the limitations of these representations.

physics.flu-dyn↗

arXiv2018

Swimming of peritrichous bacteria is enabled by an elastohydrodynamic instability

Peritrichously-flagellated bacteria, such as Escherichia coli, self-propel in fluids by using specialised motors to rotate multiple helical filaments. The rotation of each motor is transmitted to a short flexible segment called the hook which in turn transmits it to a flagellar filament, enabling swimming of the whole cell. Since multiple motors are spatially distributed on the body of the organism, one would expect the propulsive forces from the filaments to push against each other leading to negligible swimming. We use a combination of computations and theory to show that the swimming of multi-flagellated bacteria is enabled by an elastohydrodynamic bending instability occurring for hooks more flexible than a critical threshold. Using past measurements of hook bending stiffness, we demonstrate how the design of real bacteria allows them to be safely on the side of this instability that promotes systematic swimming.

physics.bio-ph↗

arXiv2018

Physics of Bubble-Propelled Microrockets

A popular method to induce synthetic propulsion at the microscale is to use the forces created by surface-produced gas bubbles inside the asymmetric body of a catalytic swimmer (referred to in the literature as microrocket). Gas bubbles nucleate and grow within the catalytic swimmer and migrate toward one of its opening under the effect of asymmetric geometric confinement, thus generating a net hydrodynamic force which propels the device. In this paper we use numerical simulations to develop a joint chemical (diffusive) and hydrodynamic (Stokes) analysis of the bubble growth within a conical catalytic microrocket and of the associated bubble and microrocket motion. Our computational model allows us to solve for the bubble dynamics over one full bubble cycle ranging from its nucleation to its exiting the conical rocket and therefore to identify the propulsion characteristics as function of all design parameters, including geometry and chemical activity of the motor, surface tension phenomena, and all physicochemical constants. Our results suggest that hydrodynamics and chemistry partially decouple in the motion of the bubbles, with hydrodynamics determining the distance travelled by the microrocket over each cycle while chemistry setting the bubble ejection frequency. Our numerical model finally allows us to identify an optimal microrocket shape and size for which the swimming velocity (distance travelled per cycle duration) is maximized.

physics.flu-dyn↗

arXiv2018

Collective dissolution of microbubbles

A microscopic bubble of soluble gas always dissolves in finite time in an under-saturated fluid. This diffusive process is driven by the difference between the gas concentration near the bubble, whose value is governed by the internal pressure through Henry's law, and the concentration in the far field. The presence of neighbouring bubbles can significantly slow down this process by increasing the effective background concentration and reducing the diffusing flux of dissolved gas experienced by each bubble. We develop theoretical modelling of such diffusive shielding process in the case of small microbubbles whose internal pressure is dominated by Laplace pressure. We first use an exact semi-analytical solution to capture the case of two bubbles, analyse in detail the shielding effect and show that hydrodynamic effects are mostly negligible except in the case of almost-touching bubbles. In order to tackle the case of multiple bubbles, we then derive and validate two analytical approximate yet generic frameworks, first using the method of reflections and then by proposing a self-consistent continuum description. Using both modelling frameworks, we examine the dissolution of regular 1D, 2D and 3D bubble lattices. Bubbles located at the edge of the lattices dissolve first, while innermost bubbles benefit from the diffusive shielding effect, leading to the inward propagation of a dissolution front within the lattice. We show that diffusive shielding leads to severalfold increases in the dissolution time which grows logarithmically with the number of bubbles in 1D-lattices and algebraically in two and three dimensions, scaling respectively as its square root and 2/3-power. We further illustrate the sensitivity of the dissolution patterns to initial fluctuations in bubble size or arrangement in the case of large and dense lattices, as well as non-intuitive oscillatory effects.

physics.flu-dyn↗

arXiv2018

Autophoretic motion in three dimensions

Janus particles with the ability to move phoretically in self-generated chemical concentration gradients are model systems for active matter. Their motion typically consists of straight paths with rotational diffusion being the dominant reorientation mechanism. In this paper, we show theoretically that by a suitable surface coverage of both activity and mobility, translational and rotational motion can be induced arbitrarily in three dimensions. The resulting trajectories are in general helical, and their pitch and radius can be controlled by adjusting the angle between the translational and angular velocity. Building on the classical mathematical framework for axisymmetric self-phoretic motion under fixed-flux chemical boundary condition, we first show how to calculate the most general three-dimensional motion for an arbitrary surface coverage of a spherical particle. After illustrating our results on surface distributions, we next introduce a simple intuitive patch model to serve as a guide for designing arbitrary phoretic spheres.

cond-mat.soft↗

arXiv2018

Leading-order Stokes flows near a corner

Singular solutions of the Stokes equations play important roles in a variety of fluid dynamics problems. They allow the calculation of exact flows, are the basis of the boundary integral methods used in numerical computations, and can be exploited to derive asymptotic flows in a wide range of physical problems. The most fundamental singular solution is the flow's Green function due to a point force, termed the Stokeslet. Its expression is classical both in free space and near a flat surface. Motivated by problems in biological physics occurring near corners, we derive in this paper the asymptotic behaviour for the Stokeslet both near and far from a corner geometry by using complex analysis on a known double integral solution for corner flows. We investigate all possible orientations of the point force relative to the corner and all corner geometries from acute to obtuse. The case of salient corners is also addressed for point forces aligned with both walls. We use experiments on beads sedimenting in corn syrup to qualitatively test the applicability of our results. The final results and scaling laws will allow to address the role of hydrodynamic interactions in problems from colloidal science to microfluidics and biological physics.

physics.flu-dyn↗

arXiv2018

Helical micropumps near surfaces

Recent experiments proposed to use confined bacteria in order to generate flows near surfaces. We develop a mathematical and a computational model of this fluid transport using a linear superposition of fundamental flow singularities. The rotation of a helical bacterial flagellum induces both a force and a torque on the surrounding fluid, both of which lead to a net flow along the surface. The combined flow is in general directed at an angle to the axis of the flagellar filament. The optimal pumping is thus achieved when bacteria are tilted with respect to the direction in which one wants to move the fluid, in good agreement with experimental results. We further investigate the optimal helical shapes to be used as micropumps near surfaces and show that bacterial flagella are nearly optimal, a result which could be relevant to the expansion of bacterial swarms.

physics.bio-ph↗

arXiv2017

Bundling of elastic filaments induced by hydrodynamic interactions

Peritrichous bacteria swim in viscous fluids by rotating multiple helical flagellar filaments. As the bacterium swims forward, all its flagella rotate in synchrony behind the cell in a helical bundle. When the bacterium changes its direction, the flagellar filaments unbundle and reorient the cell for a short period of time before returning to their bundled state and resuming swimming. This rapid bundling and unbundling is, at its heart, a mechanical process whereby hydrodynamic interactions balance with elasticity to determine the time-varying deformation of the filaments. Inspired by this biophysical problem, we present in this paper what is perhaps the simplest model of bundling whereby two, or more, straight elastic filaments immersed in a viscous fluid rotate about their centreline, inducing rotational flows which tend to bend the filaments around each other. We derive an integro-differential equation governing the shape of the filaments resulting from mechanical balance in a viscous fluid at low Reynolds number. We show that such equation may be evaluated asymptotically analytically in the long-wavelength limit, leading to a local partial differential equation governed by a single dimensionless Bundling number. A numerical study of the dynamics predicted by the model reveals the presence of two configuration instabilities with increasing Bundling numbers: first to a crossing state where filaments touch at one point and then to a bundled state where filaments wrap along each other in a helical fashion. We next provide an intuitive physical model for the crossing instability and show that it may be used to predict analytically its threshold, and adapted to address the transition to a bundling state. We then use a macro-scale experimental implementation of the two-filament configuration in order to validate our theoretical predictions and obtain excellent agreement.

physics.flu-dyn↗

arXiv2017

Active particles in periodic lattices

Both natural and artificial small-scale swimmers may often self-propel in environments subject to complex geometrical constraints. While most past theoretical work on low-Reynolds number locomotion addressed idealised geometrical situations, not much is known on the motion of swimmers in heterogeneous environments. As a first theoretical model, we investigate numerically the behaviour of a single spherical micro-swimmer located in an infinite, periodic body-centred cubic lattice consisting of rigid inert spheres of the same size as the swimmer. Running a large number of simulations we uncover the phase diagram of possible trajectories as a function of the strength of the swimming actuation and the packing density of the lattice. We then use hydrodynamic theory to rationalise our computational results and show in particular how the far-field nature of the swimmer (pusher vs. puller) governs even the behaviour at high volume fractions.

physics.flu-dyn↗

arXiv2017

Two-fluid model for locomotion under self-confinement

The bacterium Helicobacter pylori causes ulcers in the stomach of humans by invading mucus layers protecting epithelial cells. It does so by chemically changing the rheological properties of the mucus from a high-viscosity gel to a low-viscosity solution in which it may self-propel. We develop a two-fluid model for this process of swimming under self-generated confinement. We solve exactly for the flow and the locomotion speed of a spherical swimmer located in a spherically symmetric system of two Newtonian fluids whose boundary moves with the swimmer. We also treat separately the special case of an immobile outer fluid. In all cases, we characterise the flow fields, their spatial decay, and the impact of both the viscosity ratio and the degree of confinement on the locomotion speed of the model swimmer. The spatial decay of the flow retains the same power-law decay as for locomotion in a single fluid but with a decreased magnitude. Independently of the assumption chosen to characterise the impact of confinement on the actuation applied by the swimmer, its locomotion speed always decreases with an increase in the degree of confinement. Our modelling results suggest that a low-viscosity region of at least six times the effective swimmer size is required to lead to swimming with speeds similar to locomotion in an infinite fluid, corresponding to a region of size above $\approx 25~μ$m for Helicobacter pylori.

cond-mat.soft↗