arXiv subjects

Eric Shea-Brown

Publications and source records attributed to Eric Shea-Brown.

At least 55 records · Page 3Linked to original sources

arXiv2013

Chaos and reliability in balanced spiking networks with temporal drive

Biological information processing is often carried out by complex networks of interconnected dynamical units. A basic question about such networks is that of reliability: if the same signal is presented many times with the network in different initial states, will the system entrain to the signal in a repeatable way? Reliability is of particular interest in neuroscience, where large, complex networks of excitatory and inhibitory cells are ubiquitous. These networks are known to autonomously produce strongly chaotic dynamics - an obvious threat to reliability. Here, we show that such chaos persists in the presence of weak and strong stimuli, but that even in the presence of chaos, intermittent periods of highly reliable spiking often coexist with unreliable activity. We elucidate the local dynamical mechanisms involved in this intermittent reliability, and investigate the relationship between this phenomenon and certain time-dependent attractors arising from the dynamics. A conclusion is that chaotic dynamics do not have to be an obstacle to precise spike responses, a fact with implications for signal coding in large networks.

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arXiv2012

Neutral stability, rate propagation, and critical branching in feedforward networks

Recent experimental and computational evidence suggests that several dynamical properties may characterize the operating point of functioning neural networks: critical branching, neutral stability, and production of a wide range of firing patterns. We seek the simplest setting in which these properties emerge, clarifying their origin and relationship in random, feedforward networks of McCullochs-Pitts neurons. Two key parameters are the thresholds at which neurons fire spikes, and the overall level of feedforward connectivity. When neurons have low thresholds, we show that there is always a connectivity for which the properties in question all occur: that is, these networks preserve overall firing rates from layer to layer and produce broad distributions of activity in each layer. This fails to occur, however, when neurons have high thresholds. A key tool in explaining this difference is eigenstructure of the resulting mean-field Markov chain, as this reveals which activity modes will be preserved from layer to layer. We extend our analysis from purely excitatory networks to more complex models that include inhibition and 'local' noise, and find that both of these features extend the parameter ranges over which networks produce the properties of interest.

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arXiv2012

Impact of correlated neural activity on decision making performance

Stimulus from the environment that guides behavior and informs decisions is encoded in the firing rates of neural populations. Each neuron in the populations, however, does not spike independently: spike events are correlated from cell to cell. To what degree does this apparent redundancy impact the accuracy with which decisions can be made, and the computations that are required to optimally decide? We explore these questions for two illustrative models of correlation among cells. Each model is statistically identical at the level of pairs cells, but differs in higher-order statistics that describe the simultaneous activity of larger cell groups. We find that the presence of correlations can diminish the performance attained by an ideal decision maker to either a small or large extent, depending on the nature of the higher-order interactions. Moreover, while this optimal performance can in some cases be obtained via the standard integration-to-bound operation, in others it requires a nonlinear computation on incoming spikes. Overall, we conclude that a given level of pairwise correlations--even when restricted to identical neural populations--may not always indicate redundancies that diminish decision making performance.

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arXiv2012

Motif Statistics and Spike Correlations in Neuronal Networks

Motifs are patterns of subgraphs of complex networks. We studied the impact of such patterns of connectivity on the level of correlated, or synchronized, spiking activity among pairs of cells in a recurrent network model of integrate and fire neurons. For a range of network architectures, we find that the pairwise correlation coefficients, averaged across the network, can be closely approximated using only three statistics of network connectivity. These are the overall network connection probability and the frequencies of two second-order motifs: diverging motifs, in which one cell provides input to two others, and chain motifs, in which two cells are connected via a third intermediary cell. Specifically, the prevalence of diverging and chain motifs tends to increase correlation. Our method is based on linear response theory, which enables us to express spiking statistics using linear algebra, and a resumming technique, which extrapolates from second order motifs to predict the overall effect of coupling on network correlation. Our motif-based results seek to isolate the effect of network architecture perturbatively from a known network state.

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arXiv2012

When are microcircuits well-modeled by maximum entropy methods?

Describing the collective activity of neural populations is a daunting task: the number of possible patterns grows exponentially with the number of cells, resulting in practically unlimited complexity. Recent empirical studies, however, suggest a vast simplification in how multi-neuron spiking occurs: the activity patterns of some circuits are nearly completely captured by pairwise interactions among neurons. Why are such pairwise models so successful in some instances, but insufficient in others? Here, we study the emergence of higher-order interactions in simple circuits with different architectures and inputs. We quantify the impact of higher-order interactions by comparing the responses of mechanistic circuit models vs. "null" descriptions in which all higher-than-pairwise correlations have been accounted for by lower order statistics, known as pairwise maximum entropy models. We find that bimodal input signals produce larger deviations from pairwise predictions than unimodal inputs for circuits with local and global connectivity. Moreover, recurrent coupling can accentuate these deviations, if coupling strengths are neither too weak nor too strong. A circuit model based on intracellular recordings from ON parasol retinal ganglion cells shows that a broad range of light signals induce unimodal inputs to spike generators, and that coupling strengths produce weak effects on higher-order interactions. This provides a novel explanation for the success of pairwise models in this system. Overall, our findings identify circuit-level mechanisms that produce and fail to produce higher-order spiking statistics in neural ensembles.

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arXiv2012

A point process framework for modeling electrical stimulation of the auditory nerve

Model-based studies of auditory nerve responses to electrical stimulation can provide insight into the functioning of cochlear implants. Ideally, these studies can identify limitations in sound processing strategies and lead to improved methods for providing sound information to cochlear implant users. To accomplish this, models must accurately describe auditory nerve spiking while avoiding excessive complexity that would preclude large-scale simulations of populations of auditory nerve fibers and obscure insight into the mechanisms that influence neural encoding of sound information. In this spirit, we develop a point process model of the auditory nerve that provides a compact and accurate description of neural responses to electric stimulation. Inspired by the framework of generalized linear models, the proposed model consists of a cascade of linear and nonlinear stages. We show how each of these stages can be associated with biophysical mechanisms and related to models of neuronal dynamics. Moreover, we derive a semi-analytical procedure that uniquely determines each parameter in the model on the basis of fundamental statistics from recordings of single fiber responses to electric stimulation, including threshold, relative spread, jitter, and chronaxie. The model also accounts for refractory and summation effects that influence the responses of auditory nerve fibers to high pulse rate stimulation. Throughout, we compare model predictions to published physiological data and explain differences in auditory nerve responses to high and low pulse rate stimulation. We close by performing an ideal observer analysis of simulated spike trains in response to sinusoidally amplitude modulated stimuli and find that carrier pulse rate does not affect modulation detection thresholds.

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arXiv2011

Neural integrators for decision making: A favorable tradeoff between robustness and sensitivity

A key step in many perceptual decision tasks is the integration of sensory inputs over time, but fundamental questions remain about how this is accomplished in neural circuits. One possibility is to balance decay modes of membranes and synapses with recurrent excitation. To allow integration over long timescales, however, this balance must be precise; this is known as the fine tuning problem. The need for fine tuning can be overcome via a ratchet-like mechanism, in which momentary inputs must be above a preset limit to be registered by the circuit. The degree of this ratcheting embodies a tradeoff between sensitivity to the input stream and robustness against parameter mistuning. The goal of our study is to analyze the consequences of this tradeoff for decision making performance. For concreteness, we focus on the well-studied random dot motion discrimination task. For stimulus parameters constrained by experimental data, we find that loss of sensitivity to inputs has surprisingly little cost for decision performance. This leads robust integrators to performance gains when feedback becomes mistuned. Moreover, we find that substantially robust and mistuned integrator models remain consistent with chronometric and accuracy functions found in experiments. We explain our findings via sequential analysis of the momentary and integrated signals, and discuss their implication: robust integrators may be surprisingly well-suited to subserve the basic function of evidence integration in many cognitive tasks.

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arXiv2011

Impact of network structure and cellular response on spike time correlations

Novel experimental techniques reveal the simultaneous activity of larger and larger numbers of neurons. As a result there is increasing interest in the structure of cooperative -- or correlated -- activity in neural populations, and in the possible impact of such correlations on the neural code. A fundamental theoretical challenge is to understand how the architecture of network connectivity along with the dynamical properties of single cells shape the magnitude and timescale of correlations. We provide a general approach to this problem by extending prior techniques based on linear response theory. We consider networks of general integrate-and-fire cells with arbitrary architecture, and provide explicit expressions for the approximate cross-correlation between constituent cells. These correlations depend strongly on the operating point (input mean and variance) of the neurons, even when connectivity is fixed. Moreover, the approximations admit an expansion in powers of the matrices that describe the network architecture. This expansion can be readily interpreted in terms of paths between different cells. We apply our results to large excitatory-inhibitory networks, and demonstrate first how precise balance --- or lack thereof --- between the strengths and timescales of excitatory and inhibitory synapses is reflected in the overall correlation structure of the network. We then derive explicit expressions for the average correlation structure in randomly connected networks. These expressions help to identify the important factors that shape coordinated neural activity in such networks.

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arXiv2011

The A-current and Type I / Type II transition determine collective spiking from common input

The mechanisms and impact of correlated, or synchronous, firing among pairs and groups of neurons is under intense investigation throughout the nervous system. A ubiquitous circuit feature that can give rise to such correlations consists of overlapping, or common, inputs to pairs and populations of cells, leading to common spike train responses. Here, we use computational tools to study how the transfer of common input currents into common spike outputs is modulated by the physiology of the recipient cells. We focus on a key conductance - gA, for the A-type potassium current - which drives neurons between "Type II" excitability (low gA), and "Type I" excitability (high gA). Regardless of gA, cells transform common input fluctuations into a ten- dency to spike nearly simultaneously. However, this process is more pronounced at low gA values, as previously predicted by reduced "phase" models. Thus, for a given level of common input, Type II neurons produce spikes that are relatively more correlated over short time scales. Over long time scales, the trend reverses, with Type II neurons producing relatively less correlated spike trains. This is because these cells' increased tendency for simultaneous spiking is balanced by opposing tendencies at larger time lags. We demonstrate a novel implication for neural signal processing: downstream cells with long time constants are selectively driven by Type I cell populations upstream, and those with short time constants by Type II cell populations. Our results are established via high-throughput numerical simulations, and explained via the cells' filtering properties and nonlinear dynamics.

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arXiv2011

Shared inputs, entrainment, and desynchrony in elliptic bursters: from slow passage to discontinuous circle maps

What input signals will lead to synchrony vs. desynchrony in a group of biological oscillators? This question connects with both classical dynamical systems analyses of entrainment and phase locking and with emerging studies of stimulation patterns for controlling neural network activity. Here, we focus on the response of a population of uncoupled, elliptically bursting neurons to a common pulsatile input. We extend a phase reduction from the literature to capture inputs of varied strength, leading to a circle map with discontinuities of various orders. In a combined analytical and numerical approach, we apply our results to both a normal form model for elliptic bursting and to a biophysically-based neuron model from the basal ganglia. We find that, depending on the period and amplitude of inputs, the response can either appear chaotic (with provably positive Lyaponov exponent for the associated circle maps), or periodic with a broad range of phase-locked periods. Throughout, we discuss the critical underlying mechanisms, including slow-passage effects through Hopf bifurcation, the role and origin of discontinuities, and the impact of noise

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arXiv2011

The what and where of adding channel noise to the Hodgkin-Huxley equations

One of the most celebrated successes in computational biology is the Hodgkin-Huxley framework for modeling electrically active cells. This framework, expressed through a set of differential equations, synthesizes the impact of ionic currents on a cell's voltage -- and the highly nonlinear impact of that voltage back on the currents themselves -- into the rapid push and pull of the action potential. Latter studies confirmed that these cellular dynamics are orchestrated by individual ion channels, whose conformational changes regulate the conductance of each ionic current. Thus, kinetic equations familiar from physical chemistry are the natural setting for describing conductances; for small-to-moderate numbers of channels, these will predict fluctuations in conductances and stochasticity in the resulting action potentials. At first glance, the kinetic equations provide a far more complex (and higher-dimensional) description than the original Hodgkin-Huxley equations. This has prompted more than a decade of efforts to capture channel fluctuations with noise terms added to the Hodgkin-Huxley equations. Many of these approaches, while intuitively appealing, produce quantitative errors when compared to kinetic equations; others, as only very recently demonstrated, are both accurate and relatively simple. We review what works, what doesn't, and why, seeking to build a bridge to well-established results for the deterministic Hodgkin-Huxley equations. As such, we hope that this review will speed emerging studies of how channel noise modulates electrophysiological dynamics and function. We supply user-friendly Matlab simulation code of these stochastic versions of the Hodgkin-Huxley equations on the ModelDB website (accession number 138950) and http://www.amath.washington.edu/~etsb/tutorials.html.

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arXiv2010

On stochastic differential equation models for ion channel noise in Hodgkin-Huxley neurons

The random transitions of ion channels between conducting and non-conducting states generate a source of internal fluctuations in a neuron, known as channel noise. The standard method for modeling fluctuations in the states of ion channels uses continuous-time Markov chains nonlinearly coupled to a differential equation for voltage. Beginning with the work of Fox and Lu, there have been attempts to generate simpler models that use stochastic differential equation (SDEs) to approximate the stochastic spiking activity produced by Markov chain models. Recent numerical investigations, however, have raised doubts that SDE models can preserve the stochastic dynamics of Markov chain models. We analyze three SDE models that have been proposed as approximations to the Markov chain model: one that describes the states of the ion channels and two that describe the states of the ion channel subunits. We show that the former channel-based approach can capture the distribution of channel noise and its effect on spiking in a Hodgkin-Huxley neuron model to a degree not previously demonstrated, but the latter two subunit-based approaches cannot. Our analysis provides intuitive and mathematical explanations for why this is the case: the temporal correlation in the channel noise is determined by the combinatorics of bundling subunits into channels, and the subunit-based approaches do not correctly account for this structure. Our study therefore confirms and elucidates the findings of previous numerical investigations of subunit-based SDE models. Moreover, it presents the first evidence that Markov chain models of the nonlinear, stochastic dynamics of neural membranes can be accurately approximated by SDEs. This finding opens a door to future modeling work using SDE techniques to further illuminate the effects of ion channel fluctuations on electrically active cells.

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arXiv2009

Timescales of spike-train correlation for neural oscillators with common drive

We examine the effect of the phase-resetting curve (PRC) on the transfer of correlated input signals into correlated output spikes in a class of neural models receiving noisy, super-threshold stimulation. We use linear response theory to approximate the spike correlation coefficient in terms of moments of the associated exit time problem, and contrast the results for Type I vs. Type II models and across the different timescales over which spike correlations can be assessed. We find that, on long timescales, Type I oscillators transfer correlations much more efficiently than Type II oscillators. On short timescales this trend reverses, with the relative efficiency switching at a timescale that depends on the mean and standard deviation of input currents. This switch occurs over timescales that could be exploited by downstream circuits.

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arXiv2008

Stimulus-dependent correlations and population codes

The magnitude of correlations between stimulus-driven responses of pairs of neurons can itself be stimulus-dependent. We examine how this dependence impacts the information carried by neural populations about the stimuli that drive them. Stimulus-dependent changes in correlations can both carry information directly and modulate the information separately carried by the firing rates and variances. We use Fisher information to quantify these effects and show that, although stimulus dependent correlations often carry little information directly, their modulatory effects on the overall information can be large. In particular, if the stimulus-dependence is such that correlations increase with stimulus-induced firing rates, this can significantly enhance the information of the population when the structure of correlations is determined solely by the stimulus. However, in the presence of additional strong spatial decay of correlations, such stimulus-dependence may have a negative impact. Opposite relationships hold when correlations decrease with firing rates.

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arXiv2008

Reliability of Layered Neural Oscillator Networks

We study the reliability of large networks of coupled neural oscillators in response to fluctuating stimuli. Reliability means that a stimulus elicits essentially identical responses upon repeated presentations. We view the problem on two scales: neuronal reliability, which concerns the repeatability of spike times of individual neurons embedded within a network, and pooled-response reliability, which addresses the repeatability of the total synaptic output from the network. We find that individual embedded neurons can be reliable or unreliable depending on network conditions, whereas pooled responses of sufficiently large networks are mostly reliable. We study also the effects of noise, and find that some types affect reliability more seriously than others.

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arXiv2007

Reliability of Coupled Oscillators I: Two-Oscillator Systems

This paper concerns the reliability of a pair of coupled oscillators in response to fluctuating inputs. Reliability means that an input elicits essentially identical responses upon repeated presentations regardless of the network's initial condition. Our main result is that both reliable and unreliable behaviors occur in this network for broad ranges of coupling strengths, even though individual oscillators are always reliable when uncoupled. A new finding is that at low input amplitudes, the system is highly susceptible to unreliable responses when the feedforward and feedback couplings are roughly comparable. A geometric explanation based on shear-induced chaos at the onset of phase-locking is proposed.

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arXiv2007

Reliability of Coupled Oscillators II: Larger Networks

We study the reliability of phase oscillator networks in response to fluctuating inputs. Reliability means that an input elicits essentially identical responses upon repeated presentations, regardless of the network's initial condition. In this paper, we extend previous results on two-cell networks to larger systems. The first issue that arises is chaos in the absence of inputs, which we demonstrate and interpret in terms of reliability. We give a mathematical analysis of networks that can be decomposed into modules connected by an acyclic graph. For this class of networks, we show how to localize the source of unreliability, and address questions concerning downstream propagation of unreliability once it is produced.

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arXiv2007

Universal properties of correlation transfer in integrate-and-fire neurons

One of the fundamental characteristics of a nonlinear system is how it transfers correlations in its inputs to correlations in its outputs. This is particularly important in the nervous system, where correlations between spiking neurons are prominent. Using linear response and asymptotic methods for pairs of unconnected integrate-and-fire (IF) neurons receiving white noise inputs, we show that this correlation transfer depends on the output spike firing rate in a strong, stereotyped manner, and is, surprisingly, almost independent of the interspike variance. For cells receiving heterogeneous inputs, we further show that correlation increases with the geometric mean spiking rate in the same stereotyped manner, greatly extending the generality of this relationship. We present an immediate consequence of this relationship for population coding via tuning curves.

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