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Eriks Kupce

Publications and source records attributed to Eriks Kupce.

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Hadamard magnetization transfers achieve dramatic sensitivity enhancements in homonuclear multidimensional NMR correlations of labile sites in proteins, polysaccharides and nucleic acids

EXSY, TOCSY and NOESY lie at the foundation of homonuclear NMR experiments in organic and pharmaceutical chemistry, as well as in structural biology. Limited magnetization transfer efficiency is an intrinsic downside of these methods, particularly when targeting rapidly exchanging species such as labile protons ubiquitous in polysaccharides, sidechains and backbones of proteins, and in bases and sugars of nucleic acids: the fast decoherence imparted on these protons through solvent exchanges, greatly reduces their involvement in homonuclear correlation experiments. We have recently discussed how these decoherences can be visualized as an Anti-Zeno Effect, that can be harnessed to enhance the efficiency of homonuclear transfers within Looped PROjected SpectroscopY (L-PROSY) leading to 200-300% enhancements in NOESY and TOCSY cross-peaks for amide groups in biomolecules. This study demonstrates that even larger sensitivity gains per unit time, equivalent to reductions by several hundred-folds in the duration of experiments, can be achieved by looping inversion or using saturation procedures. In the ensuing experiments a priori selected frequencies are encoded according to Hadamard recipes, and subsequently resolved along the indirect dimension via linear combinations. Magnetization-transfer (MT) processes reminiscent of those occurring in CEST provide significant enhancements in the resulting cross-peaks, in only a fraction of acquisition time of a normal 2D experiment. The effectiveness of the ensuing three-way polarization transfer interplay between water, labile and non-labile protons was corroborated experimentally for proteins, homo-oligosaccharides and nucleic acids. In all cases, cross-peaks barely detectable in conventional 2D NMR counterparts, were measured ca. 10-fold faster and with 200-600% signal enhancements by the Hadamard MT counterparts.

physics.chem-ph

NMR Quantum Logic Gates for Homonuclear Spin Systems

If NMR systems are to be used as practical quantum computers, the number of coupled spins will need to be so large that it is not feasible to rely on purely heteronuclear spin systems. The implementation of a quantum logic gate imposes certain constraints on the motion of those spins not directly involved in that gate, the so-called "spectator" spins; they must be returned to their initial states at the end of the sequence. As a result, a homonuclear spin system where there is appreciable coupling between every pair of spins would seem to require a refocusing scheme that doubles in complexity and duration for every additional spectator spin. Fortunately, for the more realistic practical case where long-range spin-spin couplings can be neglected, simpler refocusing schemes can be devised where the overall duration of the sequence remains constant and the number of soft pulses increases only linearly with the number of spectator spins. These ideas are tested experimentally on a six qubit system: the six coupled protons of inosine.

quant-ph