arXiv subjects

Erin M. Schliep

Publications and source records attributed to Erin M. Schliep.

At least 19 recordsLinked to original sources

arXiv2026

Efficient Bayesian Inference for Spatial Point Patterns Using the Palm Likelihood

Bayesian inference for spatial point patterns is often hindered computationally by intractable likelihoods. In the frequentist literature, estimating equations utilizing pseudolikelihoods have long been used for parameter estimation. One such pseudolikelihood based on the process of differences is known as the Palm likelihood. Utilizing notions of Bayesian composite likelihoods and generalized Bayesian inference, we develop a framework for the use of Palm likelihoods in a Bayesian context with implementation using the probabilistic programming language, Stan. Naive implementation of the Palm likelihood results in posterior undercoverage of model parameters. We propose two approaches to remedy this issue and calibrate the resulting posterior. Numerical simulations illustrate both the efficacy of the method in terms of statistical properties and the superiority in terms of computational efficiency when compared to classical Bayesian inference. The method is then applied to the popular \textit{Beilschmiedia pendula Lauraceae} dataset.

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arXiv2026

Improving ecological inference and uncertainty quantification from camera trap data through the fusion of AI confidences and manual annotations

Camera traps have become an important tool in ecological research, enabling large-scale, noninvasive monitoring of wildlife populations and behavior. By automatically recording animals as they pass within view, these devices generate massive image datasets with minimal field effort. This data richness introduces a new bottleneck when translating the images into usable information due to time and effort required for human annotation. Artificial intelligence (AI) has recently been integrated into the workflow to improve efficiency. However, the data procured from AI approaches are of a different nature, necessitating new statistical methods. We develop a new Bayesian hierarchical data-fusion model that combines the strengths of human annotations and AI predictions. The benefits of our approach are an ability to provide uncertainty quantification as well as improved inference and predictive power, which we demonstrate through simulation. We apply our model to an AI analysis of the body condition of white-tailed deer (Odocoileus virginianus) from camera trap images from North Carolina to study the relationship between health and their environment. Our analysis derived novel ecological inference compared to a more traditional approach using the same data. We find that bucks in rut have higher (healthier) body condition than other deer and that green, open habitats are correlated with high body condition.

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arXiv2026

Analyzing spatial point processes degraded by displacement and imperfect detection

Spatial point processes are a valuable tool for probabilistic modeling to explain location data. However, the data themselves are often observed imperfectly. In order to perform accurate inference, one must account for these imperfections, which we refer to as degradation. We consider two forms of degradation for spatial Poisson processes: thinning and displacement. First, we provide some theoretical results on model identifiability, showing that, under weak conditions, one can jointly learn the scale of the displacement, a parametric form of thinning, and a nonparametric intensity function. The ability to learn all of these components and the resulting improvements for inference compared to the conceptual non-degraded but misspecified model are shown empirically via simulation study. Finally, we apply this approach to North Atlantic right whale call data from Cape Cod Bay.

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arXiv2026

Spatial causal inference in the presence of preferential sampling to study the impacts of marine protected areas

Marine Protected Areas (MPAs) have been established globally to conserve marine resources. Given their maintenance costs and impact on commercial fishing, it is critical to evaluate their effectiveness to support future conservation. In this paper, we use data collected from the Australian coast to estimate the effect of MPAs on biodiversity. Environmental studies such as these are often observational, and processes of interest exhibit spatial dependence, which presents challenges in estimating the causal effects. Spatial data can also be subject to preferential sampling, where the sampling locations are related to the policy and the response variable, further complicating inference and prediction. To address these challenges, we propose a spatial causal inference method that simultaneously accounts for unmeasured spatial confounders in both the sampling process and the treatment allocation. We prove the identifiability of key parameters in the model and the consistency of the posterior distributions of those parameters. We show via simulation studies that the causal effect of interest can be reliably estimated under the proposed model. The proposed method is applied to assess the effect of MPAs on fish biomass. We find evidence of preferential sampling and that properly accounting for this source of bias impacts the estimate of the causal effect.

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arXiv2026

Accounting for variable detection functions in temporal abundance modeling via transfer learning

Relative abundance, measured as the number of animals caught per unit of sampling effort (CPUE), is commonly used to monitor fish and wildlife populations, largely because sampling methods are cost-effective to implement. Modeling relative abundance, however, requires the assumption that the detection probability is constant across sampling events. This assumption is likely not valid, as the probability of detection often varies as a function of several factors, including the characteristics of individual animals and environmental conditions at the time of sampling. In contrast, methods to estimate absolute abundance, such as capture-recapture (CR), account for variable detection, but are often infeasible to implement across large spatiotemporal scales. Despite this, CR data are sometimes available for species of interest, albeit at smaller spatiotemporal extents. Leveraging information on detection probabilities from CR data to help inform estimates of widely available CPUE data could strengthen inferences about the status of fish and wildlife populations. We propose an approach to (i) learn the effect of environmental covariates on detection probabilities from CR data and (ii) transfer these detection functions to CPUE models for improved inference. Shown empirically through a simulation study, this approach improves estimates of abundance and the ability to detect temporal trends. We apply our transfer learning method using CR and CPUE data to recreationally important smallmouth bass (\textit{Micropterus dolomieu}) fisheries in Pennsylvania, USA rivers.

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arXiv2026

Modeling Animal Communication Using Multivariate Hawkes Processes with Additive Excitation and Multiplicative Inhibition

Animal acoustic communication often exhibits temporal dependence, with calls triggering or suppressing subsequent calls within and across call types, individuals, or species. While Hawkes processes provide a natural framework for modeling excitation, incorporating inhibition in multivariate settings can raise identifiability issues and complicate parameter interpretation. We propose a flexible class of multivariate Hawkes processes that combines additive excitation with multiplicative inhibition. This formulation preserves the branching process interpretation of excitation while reducing confounding between excitation and inhibition, and allows direct quantification of background and excitation contributions to the event rate. Bayesian inference is conducted via Markov chain Monte Carlo, and model adequacy is assessed using the random time change theorem. The proposed methodology is evaluated through simulation and applied to two acoustic communication datasets: group-living meerkats, for which we analyze three selected call types with distinct behavioral roles, and a two-species baleen whale dataset involving humpback and North Atlantic right whales. The meerkat analysis reveals significant within- and cross-type excitation with cross-type inhibition, whereas the whale data show evidence primarily of within-species excitation.

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arXiv2025

Expected Points Above Average: A Novel NBA Player Metric Based on Bayesian Hierarchical Modeling

In this paper, we propose two novel basketball metrics: ``expected points'' for team-based comparisons and ``expected points above average (EPAA)'' as a player-evaluation tool. Established within the Bayesian hierarchical model framework, teams and players are clustered based on their shooting propensities and abilities using posterior predictive distributions. We illustrate the concepts for the top 100 shot takers over the last decade and offer our metric as an additional metric for evaluating players. We compare our metrics to two traditional NBA player evaluation metrics: player efficiency rating and box plus/minus. Finally, we develop a Shiny web application that allows interested readers to make additional team and player comparisons.

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arXiv2024

Joint Spatiotemporal Modeling of Zooplankton and Whale Abundance in a Dynamic Marine Environment

North Atlantic right whales are an endangered species; their entire population numbers approximately 372 individuals, and they are subject to major anthropogenic threats. They feed on zooplankton species whose distribution shifts in a dynamic and warming oceanic environment. Because right whales in turn follow their shifting food resource, it is necessary to jointly study the distribution of whales and their prey. The innovative joint species distribution modeling (JSDM) contribution here is different from anything in the large JDSM literature, reflecting the processes and data we have to work with. Specifically, our JSDM supplies a geostatistical model for expected amount of zooplankton collected at a site. We require a point pattern model for the intensity of right whale abundance. The two process models are joined through a latent conditional-marginal specification. Further, each species has two data sources to inform their respective distributions and these sources require novel data fusion. What emerges is a complex multi-level model. Through simulation we demonstrate the ability of our joint specification to identify model unknowns and learn better about the species distributions than modeling them individually. We then apply our modeling to real data from Cape Cod Bay, Massachusetts in the U.S.

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arXiv2024

Analyzing whale calling through Hawkes process modeling

Sound is assumed to be the primary modality of communication among marine mammal species. Analyzing acoustic recordings helps to understand the function of the acoustic signals as well as the possible impact of anthropogenic noise on acoustic behavior. Motivated by a dataset from a network of hydrophones in Cape Cod Bay, Massachusetts, utilizing automatically detected calls in recordings, we study the communication process of the endangered North Atlantic right whale. For right whales an "up-call" is known as a contact call, and ensuing counter-calling between individuals is presumed to facilitate group cohesion. We present novel spatiotemporal excitement modeling consisting of a background process and a counter-call process. The background process intensity incorporates the influences of diel patterns and ambient noise on occurrence. The counter-call intensity captures potential excitement, that calling elicits calling behavior. Call incidence is found to be clustered in space and time; a call seems to excite more calls nearer to it in time and space. We find evidence that whales make more calls during twilight hours, respond to other whales nearby, and are likely to remain quiet in the presence of increased ambient noise.

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arXiv2023

Assessing Marine Mammal Abundance: A Novel Data Fusion

Marine mammals are increasingly vulnerable to human disturbance and climate change. Their diving behavior leads to limited visual access during data collection, making studying the abundance and distribution of marine mammals challenging. In theory, using data from more than one observation modality should lead to better informed predictions of abundance and distribution. With focus on North Atlantic right whales, we consider the fusion of two data sources to inform about their abundance and distribution. The first source is aerial distance sampling which provides the spatial locations of whales detected in the region. The second source is passive acoustic monitoring (PAM), returning calls received at hydrophones placed on the ocean floor. Due to limited time on the surface and detection limitations arising from sampling effort, aerial distance sampling only provides a partial realization of locations. With PAM, we never observe numbers or locations of individuals. To address these challenges, we develop a novel thinned point pattern data fusion. Our approach leads to improved inference regarding abundance and distribution of North Atlantic right whales throughout Cape Cod Bay, Massachusetts in the US. We demonstrate performance gains of our approach compared to that from a single source through both simulation and real data.

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arXiv2022

A Review of Data-Driven Discovery for Dynamic Systems

Many real-world scientific processes are governed by complex nonlinear dynamic systems that can be represented by differential equations. Recently, there has been increased interest in learning, or discovering, the forms of the equations driving these complex nonlinear dynamic system using data-driven approaches. In this paper we review the current literature on data-driven discovery for dynamic systems. We provide a categorization to the different approaches for data-driven discovery and a unified mathematical framework to show the relationship between the approaches. Importantly, we discuss the role of statistics in the data-driven discovery field, describe a possible approach by which the problem can be cast in a statistical framework, and provide avenues for future work.

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arXiv2022

A Bayesian Approach for Spatio-Temporal Data-Driven Dynamic Equation Discovery

Differential equations based on physical principals are used to represent complex dynamic systems in all fields of science and engineering. Through repeated use in both academics and industry, these equations have been shown to represent real-world dynamics well. Since the true dynamics of these complex systems are generally unknown, learning the governing equations can improve our understanding of the mechanisms driving the systems. Here, we develop a Bayesian approach to data-driven discovery of non-linear spatio-temporal dynamic equations. Our approach can accommodate measurement noise and missing data, both of which are common in real-world data, and accounts for parameter uncertainty. The proposed framework is illustrated using three simulated systems with varying amounts of observational uncertainty and missing data and applied to a real-world system to infer the temporal evolution of the vorticity of the streamfunction.

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arXiv2021

A Bayesian Hidden Semi-Markov Model with Covariate-Dependent State Duration Parameters for High-Frequency Environmental Data

Environmental time series data observed at high frequencies can be studied with approaches such as hidden Markov and semi-Markov models (HMM and HSMM). HSMMs extend the HMM by explicitly modeling the time spent in each state. In a discrete-time HSMM, the duration in each state can be modeled with a zero-truncated Poisson distribution, where the duration parameter may be state-specific but constant in time. We extend the HSMM by allowing the state-specific duration parameters to vary in time and model them as a function of known covariates observed over a period of time leading up to a state transition. In addition, we propose a data subsampling approach given that high-frequency data can violate the conditional independence assumption of the HSMM. We apply the model to high-frequency data collected by an instrumented buoy in Lake Mendota. We model the phycocyanin concentration, which is used in aquatic systems to estimate the relative abundance of blue-green algae, and identify important time-varying effects associated with the duration in each state.

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arXiv2021

Correcting spatial Gaussian process parameter and prediction variance estimation under informative sampling

Informative sampling designs can impact spatial prediction, or kriging, in two important ways. First, the sampling design can bias spatial covariance parameter estimation, which in turn can bias spatial kriging estimates. Second, even with unbiased estimates of the spatial covariance parameters, since the kriging variance is a function of the observation locations, these estimates will vary based on the sample and overestimate the population-based estimates. In this work, we develop a weighted composite likelihood approach to improve spatial covariance parameter estimation under informative sampling designs. Then, given these parameter estimates, we propose three approaches to quantify the effects of the sampling design on the variance estimates in spatial prediction. These results can be used to make informed decisions for population-based inference. We illustrate our approaches using a comprehensive simulation study. Then, we apply our methods to perform spatial prediction on nitrate concentration in wells located throughout central California.

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arXiv2020

A Bayesian Hidden Semi-Markov Model with Covariate-Dependent State Duration Parameters for High-Frequency Data from Wearable Devices

Data collected by wearable devices in sports provide valuable information about an athlete's behavior such as their activity, performance, and ability. These time series data can be studied with approaches such as hidden Markov and semi-Markov models (HMM and HSMM) for varied purposes including activity recognition and event detection. HSMMs extend the HMM by explicitly modeling the time spent in each state. In a discrete-time HSMM, the duration in each state can be modeled with a zero-truncated Poisson distribution, where the duration parameter may be state-specific but constant in time. We extend the HSMM by allowing the state-specific duration parameters to vary in time and model them as a function of known covariates derived from the wearable device and observed over a period of time leading up to a state transition. In addition, we propose a data subsampling approach given that high-frequency data from wearable devices can violate the conditional independence assumption of the HSMM. We apply the model to wearable device data collected on a soccer referee in a Major League Soccer game. We model the referee's physiological response to the game demands and identify important time-varying effects of these demands associated with the duration in each state.

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arXiv2020

Long-term Spatial Modeling for Characteristics of Extreme Heat Events

There is increasing evidence that global warming manifests itself in more frequent warm days and that heat waves will become more frequent. Presently, a formal definition of a heat wave is not agreed upon in the literature. To avoid this debate, we consider extreme heat events, which, at a given location, are well-defined as a run of consecutive days above an associated local threshold. Characteristics of EHEs are of primary interest, such as incidence and duration, as well as the magnitude of the average exceedance and maximum exceedance above the threshold during the EHE. Using approximately 60-year time series of daily maximum temperature data collected at 18 locations in a given region, we propose a spatio-temporal model to study the characteristics of EHEs over time. The model enables prediction of the behavior of EHE characteristics at unobserved locations within the region. Specifically, our approach employs a two-state space-time model for EHEs with local thresholds where one state defines above threshold daily maximum temperatures and the other below threshold temperatures. We show that our model is able to recover the EHE characteristics of interest and outperforms a corresponding autoregressive model that ignores thresholds based on out-of-sample prediction.

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arXiv2020

Distributed lag models to identify the cumulative effects of training and recovery in athletes using multivariate ordinal wellness data

Subjective wellness data can provide important information on the well-being of athletes and be used to maximize player performance and detect and prevent against injury. Wellness data, which are often ordinal and multivariate, include metrics relating to the physical, mental, and emotional status of the athlete. Training and recovery can have significant short- and long-term effects on athlete wellness, and these effects can vary across individual. We develop a joint multivariate latent factor model for ordinal response data to investigate the effects of training and recovery on athlete wellness. We use a latent factor distributed lag model to capture the cumulative effects of training and recovery through time. Current efforts using subjective wellness data have averaged over these metrics to create a univariate summary of wellness, however this approach can mask important information in the data. Our multivariate model leverages each ordinal variable and can be used to identify the relative importance of each in monitoring athlete wellness. The model is applied to athlete daily wellness, training, and recovery data collected across two Major League Soccer seasons.

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arXiv2020

On the spatial and temporal shift in the archetypal seasonal temperature cycle as driven by annual and semi-annual harmonics

Statistical methods are required to evaluate and quantify the uncertainty in environmental processes, such as land and sea surface temperature, in a changing climate. Typically, annual harmonics are used to characterize the variation in the seasonal temperature cycle. However, an often overlooked feature of the climate seasonal cycle is the semi-annual harmonic, which can account for a significant portion of the variance of the seasonal cycle and varies in amplitude and phase across space. Together, the spatial variation in the annual and semi-annual harmonics can play an important role in driving processes that are tied to seasonality (e.g., ecological and agricultural processes). We propose a multivariate spatio-temporal model to quantify the spatial and temporal change in minimum and maximum temperature seasonal cycles as a function of the annual and semi-annual harmonics. Our approach captures spatial dependence, temporal dynamics, and multivariate dependence of these harmonics through spatially and temporally-varying coefficients. We apply the model to minimum and maximum temperature over North American for the years 1979 to 2018. Formal model inference within the Bayesian paradigm enables the identification of regions experiencing significant changes in minimum and maximum temperature seasonal cycles due to the relative effects of changes in the two harmonics.

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