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Erwin Frey

Publications and source records attributed to Erwin Frey.

At least 163 records · Page 9Linked to original sources

Force distributions and force chains in random stiff fiber networks

We study the elasticity of random stiff fiber networks. The elastic response of the fibers is characterized by a central force stretching stiffness as well as a bending stiffness that acts transverse to the fiber contour. Previous studies have shown that this model displays an anomalous elastic regime where the stretching mode is fully frozen out and the elastic energy is completely dominated by the bending mode. We demonstrate by simulations and scaling arguments that, in contrast to the bending dominated \emph{elastic energy}, the equally important \emph{elastic forces} are to a large extent stretching dominated. By characterizing these forces on microscopic, mesoscopic and macroscopic scales we find two mechanisms of how forces are transmitted in the network. While forces smaller than a threshold $F_c$ are effectively balanced by a homogeneous background medium, forces larger than $F_c$ are found to be heterogeneously distributed throughout the sample, giving rise to highly localized force-chains known from granular media.

cond-mat.soft↗

Microtubule dynamics depart from wormlike chain model

Thermal shape fluctuations of grafted microtubules were studied using high resolution particle tracking of attached fluorescent beads. First mode relaxation times were extracted from the mean square displacement in the transverse coordinate. For microtubules shorter than 10 um, the relaxation times were found to follow an L^2 dependence instead of L^4 as expected from the standard wormlike chain model. This length dependence is shown to result from a complex length dependence of the bending stiffness which can be understood as a result of the molecular architecture of microtubules. For microtubules shorter than 5 um, high drag coefficients indicate contributions from internal friction to the fluctuation dynamics.

q-bio.BM↗

Anomalous finite-size effects in the Battle of the Sexes

The Battle of the Sexes describes asymmetric conflicts in mating behavior of males and females. Males can be philanderer or faithful, while females are either fast or coy, leading to a cyclic dynamics. The adjusted replicator equation predicts stable coexistence of all four strategies. In this situation, we consider the effects of fluctuations stemming from a finite population size. We show that they unavoidably lead to extinction of two strategies in the population. However, the typical time until extinction occurs strongly prolongs with increasing system size. In the meantime, a quasi-stationary probability distribution forms that is anomalously flat in the vicinity of the coexistence state. This behavior originates in a vanishing linear deterministic drift near the fixed point. We provide numerical data as well as an analytical approach to the mean extinction time and the quasi-stationary probability distribution.

q-bio.PE↗

Statistical Mechanics of Semiflexible Bundles of Wormlike Polymer Chains

We demonstrate that a semiflexible bundle of wormlike chains exhibits a state-dependent bending stiffness that alters fundamentally its scaling behavior with respect to the standard wormlike chain. We explore the equilibrium conformational and mechanical behavior of wormlike bundles in isolation, in crosslinked networks, and in solution.

cond-mat.stat-mech↗

Traffic jams induced by rare switching events in two-lane transport

We investigate a model for driven exclusion processes where internal states are assigned to the particles. The latter account for diverse situations, ranging from spin states in spintronics to parallel lanes in intracellular or vehicular traffic. Introducing a coupling between the internal states by allowing particles to switch from one to another induces an intriguing polarization phenomenon. In a mesoscopic scaling, a rich stationary regime for the density profiles is discovered, with localized domain walls in the density profile of one of the internal states being feasible. We derive the shape of the density profiles as well as resulting phase diagrams analytically by a mean-field approximation and a continuum limit. Continuous as well as discontinuous lines of phase transition emerge, their intersections induce multicritical behavior.

cond-mat.stat-mech↗

Conformations of confined biopolymers

Nanoscale and microscale confinement of biopolymers naturally occurs in cells and has been recently achieved in artificial structures designed for nanotechnological applications. Here, we present an extensive theoretical investigation of the conformations and shape of a biopolymer with varying stiffness confined to a narrow channel. Combining scaling arguments, analytical calculations, and Monte Carlo simulations, we identify various scaling regimes where master curves quantify the functional dependence of the polymer conformations on the chain stiffness and strength of confinement.

cond-mat.soft↗

Optimal flexibility for conformational transitions in macromolecules

Conformational transitions in macromolecular complexes often involve the reorientation of lever-like structures. Using a simple theoretical model, we show that the rate of such transitions is drastically enhanced if the lever is bendable, e.g. at a localized "hinge''. Surprisingly, the transition is fastest with an intermediate flexibility of the hinge. In this intermediate regime, the transition rate is also least sensitive to the amount of "cargo'' attached to the lever arm, which could be exploited by molecular motors. To explain this effect, we generalize the Kramers-Langer theory for multi-dimensional barrier crossing to configuration dependent mobility matrices.

q-bio.BM↗

Velocity oscillations in actin-based motility

We present a simple and generic theoretical description of actin-based motility, where polymerization of filaments maintains propulsion. The dynamics is driven by polymerization kinetics at the filaments' free ends, crosslinking of the actin network, attachment and detachment of filaments to the obstacle interfaces and entropic forces. We show that spontaneous oscillations in the velocity emerge in a broad range of parameter values, and compare our findings with experiments.

q-bio.CB↗

Cytoskeletal bundle bending, buckling, and stretching behavior

F-actin bundles constitute principal components of a multitude of cytoskeletal processes including stereocilia, filopodia, microvilli, neurosensory bristles, cytoskeletal stress fibers, and the sperm acrosome. The bending, buckling, and stretching behaviors of these processes play key roles in cellular functions ranging from locomotion to mechanotransduction and fertilization. Despite their central importance to cellular function, F-actin bundle mechanics remain poorly understood. Here, we demonstrate that bundle bending stiffness is a state-dependent quantity with three distinct regimes that are mediated by bundle dimensions in addition to crosslink properties. We calculate the complete state-dependence of the bending stiffness and elucidate the mechanical origin of each. A generic set of design parameters delineating the regimes in state-space is derived and used to predict the bending stiffness of a variety of F-actin bundles found in cells. Finally, the broad and direct implications that the isolated state-dependence of F-actin bundle stiffness has on the interpretation of the bending, buckling, and stretching behavior of cytoskeletal bundles is addressed.

q-bio.BM↗

Quantitative Tube Model for Semiflexible Polymer Solutions

We develop a analytical and quantitative theory of the tube model concept for entangled networks of semiflexible polymers. The absolute value of the tube diameter L_perp is derived as a function of the polymers' persistence length l_p and mesh size xi of the network. To leading order we find L_\perp = 0.32 xi^{6/5} l_p^{-1/5}, which is consistent with known asymptotic scaling laws. Additionally, our theory provides corrections to scaling that account for finite polymer length effects and are dominated by the mesh size to polymer length ratio. We support our analytical studies by extensive computer simulations. These allow to verify assumptions essential to our theoretical description and provide an excellent agreement with the analytically calculated tube diameter. Furthermore, we present simulation data for the distribution function of tube widths in the network.

cond-mat.soft↗

The Role of Architecture in the Elastic Response of Semiflexible Polymer and Fiber Networks

We study the elasticity of cross-linked networks of thermally fluctuating stiff polymers. As compared to their purely mechanical counterparts, it is shown that these thermal networks have a qualitatively different elastic response. By accounting for the entropic origin of the single-polymer elasticity, the networks acquire a strong susceptibility to polydispersity and structural randomness that is completely absent in athermal models. In extensive numerical studies we systematically vary the architecture of the networks and identify a wealth of phenomena that clearly show the strong dependence of the emergent macroscopic moduli on the underlying mesoscopic network structure. In particular, we highlight the importance of the full polymer length that to a large extent controls the elastic response of the network, surprisingly, even in parameter regions where it does not enter the macroscopic moduli explicitly. We provide theoretical scaling arguments to relate the observed macroscopic elasticity to the physical mechanisms on the microscopic and the mesoscopic scale.

cond-mat.soft↗

Generic principles of active transport

Nonequilibrium collective motion is ubiquitous in nature and often results in a rich collection of intringuing phenomena, such as the formation of shocks or patterns, subdiffusive kinetics, traffic jams, and nonequilibrium phase transitions. These stochastic many-body features characterize transport processes in biology, soft condensed matter and, possibly, also in nanoscience. Inspired by these applications, a wide class of lattice-gas models has recently been considered. Building on the celebrated {\it totally asymmetric simple exclusion process} (TASEP) and a generalization accounting for the exchanges with a reservoir, we discuss the qualitative and quantitative nonequilibrium properties of these model systems. We specifically analyze the case of a dimeric lattice gas, the transport in the presence of pointwise disorder and along coupled tracks.

cond-mat.stat-mech↗

Dynamics of Semiflexible Polymers in a Flow Field

We present a novel method to investigate the dynamics of a single semiflexible polymer, subject to anisotropic friction in a viscous fluid. In contrast to previous approaches, we do not rely on a discrete bead-rod model, but introduce a suitable normal mode decomposition of a continuous space curve. By means of a perturbation expansion for stiff filaments we derive a closed set of coupled Langevin equations in mode space for the nonlinear dynamics in two dimensions, taking into account exactly the local constraint of inextensibility. The stochastic differential equations obtained this way are solved numerically, with parameters adjusted to describe the motion of actin filaments. As an example, we show results for the tumbling motion in shear flow.

q-bio.BM↗

From Intracellular Traffic to a Novel Class of Driven Lattice Gas Models

Motor proteins are key players in intracellular transport processes and biological motion. Theoretical modeling of these systems has been achieved by the use of step processes on one-dimensional lattices. After a comprehensive introduction to the total asymmetric exclusion process and some analytical tools, we will give a review on different lines of research attracted to the aspects of this systems. We will focus on the generic properties of a coupling between the exclusion process and Langmuir bulk kinetics that induce topological changes in the phase diagram and multi-phase coexistence.

cond-mat.stat-mech↗

Coexistence versus extinction in the stochastic cyclic Lotka-Volterra model

Cyclic dominance of species has been identified as a potential mechanism to maintain biodiversity, see e.g. B. Kerr, M. A. Riley, M. W. Feldman and B. J. M. Bohannan [Nature {\bf 418}, 171 (2002)] and B. Kirkup and M. A. Riley [Nature {\bf 428}, 412 (2004)]. Through analytical methods supported by numerical simulations, we address this issue by studying the properties of a paradigmatic non-spatial three-species stochastic system, namely the `rock-paper-scissors' or cyclic Lotka-Volterra model. While the deterministic approach (rate equations) predicts the coexistence of the species resulting in regular (yet neutrally stable) oscillations of the population densities, we demonstrate that fluctuations arising in the system with a \emph{finite number of agents} drastically alter this picture and are responsible for extinction: After long enough time, two of the three species die out. As main findings we provide analytic estimates and numerical computation of the extinction probability at a given time. We also discuss the implications of our results for a broad class of competing population systems.

q-bio.PE↗

Stochastic effects on biodiversity in cyclic coevolutionary dynamics

Finite-size fluctuations arising in the dynamics of competing populations may have dramatic influence on their fate. As an example, in this article, we investigate a model of three species which dominate each other in a cyclic manner. Although the deterministic approach predicts (neutrally) stable coexistence of all species, for any finite population size, the intrinsic stochasticity unavoidably causes the eventual extinction of two of them.

q-bio.PE↗

Tension dynamics in semiflexible polymers. Part I: Coarse-grained equations of motion

Based on the wormlike chain model, a coarse-grained description of the nonlinear dynamics of a weakly bending semiflexible polymer is developed. By means of a multiple scale perturbation analysis, a length-scale separation inherent to the weakly-bending limit is exploited to reveal the deterministic nature of the spatio-temporal relaxation of the backbone tension and to deduce the corresponding coarse-grained equation of motion. From this partial integro-differential equation, some detailed analytical predictions for the non-linear response of a weakly bending polymer are derived in an accompanying paper (Part II, cond-mat/0609638).

cond-mat.soft↗

Tension dynamics in semiflexible polymers. Part II: Scaling solutions and applications

In Part I of this contribution, a systematic coarse-grained description of the dynamics of a weakly-bending semiflexible polymer was developed. Here, we discuss analytical solutions of the established deterministic partial integro-differential equation for the spatio-temporal relaxation of the backbone tension. For prototypal experimental situations, such as the sudden application or release of a strong external pulling force, it is demonstrated that the tensile dynamics reflects the self-affine conformational fluctuation spectrum in a variety of intermediate asymptotic power laws. Detailed and explicit analytical predictions for the tension propagation and relaxation and corresponding results for common observables, such as the end-to-end distance, are obtained.

cond-mat.soft↗