arXiv subjects

Esther Galby

Publications and source records attributed to Esther Galby.

At least 19 recordsLinked to original sources

arXiv2025

Perfect phylogenies via the Minimum Uncovering Branching problem: efficiently solvable cases

In this paper, we present new efficiently solvable cases of the Minimum Uncovering Branching problem, an optimization problem with applications in cancer genomics introduced by Hujdurović, Husić, Milanič, Rizzi, and Tomescu in 2018. The problem involves a family of finite sets, and the goal is to map each non-maximal set to exactly one set that contains it, minimizing the sum of uncovered elements across all sets in the family. Hujdurović et al. formulated the problem in terms of branchings of the digraph formed by the proper set inclusion relation on the input sets and studied the problem complexity based on properties of the corresponding partially ordered set, in particular, with respect to its height and width, defined respectively as the maximum cardinality of a chain and an antichain. They showed that the problem is APX-complete for instances of bounded height and that a constant-factor approximation algorithm exists for instances of bounded width, but left the exact complexity for bounded-width instances open. In this paper, we answer this question by proving that the problem is solvable in polynomial time. We derive this result by examining the structural properties of optimal solutions and reducing the problem to computing maximum matchings in bipartite graphs and maximum weight antichains in partially ordered sets. We also introduce a new polynomially computable lower bound and identify another condition for polynomial-time solvability.

cs.DM↗

arXiv2025

Maximum list $r$-colorable induced subgraphs in $kP_3$-free graphs

We show that, for every fixed positive integers $r$ and $k$, \textsc{Max-Weight List $r$-Colorable Induced Subgraph} admits a polynomial-time algorithm on $kP_3$-free graphs. This problem is a common generalization of \textsc{Max-Weight Independent Set}, \textsc{Odd Cycle Transversal} and \textsc{List $r$-Coloring}, among others. Our result has several consequences. First, it implies that, for every fixed $r \geq 5$, assuming $\mathsf{P}\neq \mathsf{NP}$, \textsc{Max-Weight List $r$-Colorable Induced Subgraph} is polynomial-time solvable on $H$-free graphs if and only if $H$ is an induced subgraph of either $kP_3$ or $P_5+kP_1$, for some $k \geq 1$. Second, it makes considerable progress toward a complexity dichotomy for \textsc{Odd Cycle Transversal} on $H$-free graphs, allowing to answer a question of Agrawal, Lima, Lokshtanov, Rz{ą}{ż}ewski, Saurabh, and Sharma [TALG 2024]. Third, it gives a short and self-contained proof of the known result of Chudnovsky, Hajebi, and Spirkl [Combinatorica 2024] that \textsc{List $r$-Coloring} on $kP_3$-free graphs is polynomial-time solvable for every fixed $r$ and $k$. We also consider two natural distance-$d$ generalizations of \textsc{Max-Weight Independent Set} and \textsc{List $r$-Coloring} and provide polynomial-time algorithms on $kP_3$-free graphs for every fixed integers $r$, $k$, and $d \geq 6$.

math.CO↗

arXiv2025

Problems in NP can Admit Double-Exponential Lower Bounds when Parameterized by Treewidth or Vertex Cover

Treewidth (tw) is an important parameter that, when bounded, yields tractability for many problems. For example, graph problems expressible in Monadic Second Order (MSO) logic and QUANTIFIED SAT or, more generally, QUANTIFIED CSP, are FPT parameterized by the tw of the input's (primal) graph plus the length of the MSO-formula [Courcelle, Information & Computation 1990] and the quantifier rank [Chen, ECAI 2004], resp. The algorithms from these (meta-)results have running times whose dependence on tw is a tower of exponents. A conditional lower bound by Fichte et al. [LICS 2020] shows that, for QUANTIFIED SAT, the height of this tower is equal to the number of quantifier alternations. Lower bounds showing that at least double-exponential factors in the running time are necessary are rare: there are very few (for tw and vertex cover vc parameterizations) and they are for problems that are complete for #NP, $Σ_2^p$, $Π_2^p$, or higher levels of the polynomial hierarchy. We show, for the first time, that it is not necessary to go higher up in the polynomial hierarchy to obtain such lower bounds. We design a novel, yet simple versatile technique based on Sperner families to obtain such lower bounds and apply it to 3 problems: METRIC DIMENSION, STRONG METRIC DIMENSION, and GEODETIC SET. We prove that they do not admit $2^{2^{o(tw)}} \cdot n^{O(1)}$-time algorithms, even on bounded diameter graphs, unless the ETH fails. For STRONG METRIC DIMENSION, the lower bound holds even for vc. We complement our lower bounds with matching upper bounds.

cs.CC↗

arXiv2025

Metric Dimension and Geodetic Set Parameterized by Vertex Cover

For a graph $G$, a subset $S\subseteq V(G)$ is called a resolving set of $G$ if, for any two vertices $u,v\in V(G)$, there exists a vertex $w\in S$ such that $d(w,u)\neq d(w,v)$. The Metric Dimension problem takes as input a graph $G$ on $n$ vertices and a positive integer $k$, and asks whether there exists a resolving set of size at most $k$. In another metric-based graph problem, Geodetic Set, the input is a graph $G$ and an integer $k$, and the objective is to determine whether there exists a subset $S\subseteq V(G)$ of size at most $k$ such that, for any vertex $u \in V(G)$, there are two vertices $s_1, s_2 \in S$ such that $u$ lies on a shortest path from $s_1$ to $s_2$. These two classical problems turn out to be intractable with respect to the natural parameter, i.e., the solution size, as well as most structural parameters, including the feedback vertex set number and pathwidth. Some of the very few existing tractable results state that they are both FPT with respect to the vertex cover number $vc$. More precisely, we observe that both problems admit an FPT algorithm running in time $2^{\mathcal{O}(vc^2)}\cdot n^{\mathcal{O}(1)}$, and a kernelization algorithm that outputs a kernel with $2^{\mathcal{O}(vc)}$ vertices. We prove that unless the Exponential Time Hypothesis fails, Metric Dimension and Geodetic Set, even on graphs of bounded diameter, neither admit an FPT algorithm running in time $2^{o(vc^2)}\cdot n^{\mathcal(1)}$, nor a kernelization algorithm that reduces the solution size and outputs a kernel with $2^{o(vc)}$ vertices. The versatility of our technique enables us to apply it to both these problems. We only know of one other problem in the literature that admits such a tight lower bound. Similarly, the list of known problems with exponential lower bounds on the number of vertices in kernelized instances is very short.

cs.DS↗

arXiv2024

Polynomial-time approximation schemes for induced subgraph problems on fractionally tree-independence-number-fragile graphs

We investigate a relaxation of the notion of fractional treewidth-fragility, namely fractional tree-independence-number-fragility. In particular, we obtain polynomial-time approximation schemes for meta-problems such as finding a maximum-weight sparse induced subgraph satisfying a given $\mathsf{CMSO}_2$ formula on fractionally tree-independence-number-fragile graph classes. Our approach unifies and extends several known polynomial-time approximation schemes on seemingly unrelated graph classes, such as classes of intersection graphs of fat objects in a fixed dimension or proper minor-closed classes. We also study the related notion of layered tree-independence number, a relaxation of layered treewidth, and its applications to exact subexponential-time algorithms.

cs.DS↗

arXiv2023

Metric Dimension Parameterized by Feedback Vertex Set and Other Structural Parameters

For a graph $G$, a subset $S \subseteq V(G)$ is called a \emph{resolving set} if for any two vertices $u,v \in V(G)$, there exists a vertex $w \in S$ such that $d(w,u) \neq d(w,v)$. The {\sc Metric Dimension} problem takes as input a graph $G$ and a positive integer $k$, and asks whether there exists a resolving set of size at most $k$. This problem was introduced in the 1970s and is known to be \NP-hard~[GT~61 in Garey and Johnson's book]. In the realm of parameterized complexity, Hartung and Nichterlein~[CCC~2013] proved that the problem is \W[2]-hard when parameterized by the natural parameter $k$. They also observed that it is \FPT\ when parameterized by the vertex cover number and asked about its complexity under \emph{smaller} parameters, in particular the feedback vertex set number. We answer this question by proving that {\sc Metric Dimension} is \W[1]-hard when parameterized by the combined parameter feedback vertex set number plus pathwidth. This also improves the result of Bonnet and Purohit~[IPEC 2019] which states that the problem is \W[1]-hard parameterized by the pathwidth. On the positive side, we show that {\sc Metric Dimension} is \FPT\ when parameterized by either the distance to cluster or the distance to co-cluster, both of which are smaller parameters than the vertex cover number.

cs.DM↗

arXiv2023

Polynomial-Time Approximation Schemes for Independent Packing Problems on Fractionally Tree-Independence-Number-Fragile Graphs

We investigate a relaxation of the notion of treewidth-fragility, namely tree-independence-number-fragility. In particular, we obtain polynomial-time approximation schemes for independent packing problems on fractionally tree-independence-number-fragile graph classes. Our approach unifies and extends several known polynomial-time approximation schemes on seemingly unrelated graph classes, such as classes of intersection graphs of fat objects in a fixed dimension or proper minor-closed classes. We also study the related notion of layered tree-independence number, a relaxation of layered treewidth.

cs.DS↗

arXiv2022

Subexponential Parameterized Directed Steiner Network Problems on Planar Graphs: a Complete Classification

In the Directed Steiner Network problem, the input is a directed graph G, a subset T of k vertices of G called the terminals, and a demand graph D on T. The task is to find a subgraph H of G with the minimum number of edges such that for every edge (s,t) in D, the solution H contains a directed s to t path. In this paper we investigate how the complexity of the problem depends on the demand pattern when G is planar. Formally, if \mathcal{D} is a class of directed graphs closed under identification of vertices, then the \mathcal{D}-Steiner Network (\mathcal{D}-SN) problem is the special case where the demand graph D is restricted to be from \mathcal{D}. For general graphs, Feldmann and Marx [ICALP 2016] characterized those families of demand graphs where the problem is fixed-parameter tractable (FPT) parameterized by the number k of terminals. They showed that if \mathcal{D} is a superset of one of the five hard families, then \mathcal{D}-SN is W[1]-hard parameterized by k, otherwise it can be solved in time f(k)n^{O(1)}. For planar graphs an interesting question is whether the W[1]-hard cases can be solved by subexponential parameterized algorithms. Chitnis et al. [SICOMP 2020] showed that, assuming the ETH, there is no f(k)n^{o(k)} time algorithm for the general \mathcal{D}-SN problem on planar graphs, but the special case called Strongly Connected Steiner Subgraph can be solved in time f(k) n^{O(\sqrt{k})} on planar graphs. We present a far-reaching generalization and unification of these two results: we give a complete characterization of the behavior of every $\mathcal{D}$-SN problem on planar graphs. We show that assuming ETH, either the problem is (1) solvable in time 2^{O(k)}n^{O(1)}, and not in time 2^{o(k)}n^{O(1)}, or (2) solvable in time f(k)n^{O(\sqrt{k})}, but not in time f(k)n^{o(\sqrt{k})}, or (3) solvable in time f(k)n^{O(k)}, but not in time f(k)n^{o({k})}.

cs.DS↗

arXiv2022

Domination and Cut Problems on Chordal Graphs with Bounded Leafage

The leafage of a chordal graph G is the minimum integer l such that G can be realized as an intersection graph of subtrees of a tree with l leaves. We consider structural parameterization by the leafage of classical domination and cut problems on chordal graphs. Fomin, Golovach, and Raymond [ESA 2018, Algorithmica 2020] proved, among other things, that Dominating Set on chordal graphs admits an algorithm running in time $2^{O(l^2)} n^{O(1)}$. We present a conceptually much simpler algorithm that runs in time $2^{O(l)} n^{O(1)}$. We extend our approach to obtain similar results for Connected Dominating Set and Steiner Tree. We then consider the two classical cut problems MultiCut with Undeletable Terminals and Multiway Cut with Undeletable Terminals. We prove that the former is W[1]-hard when parameterized by the leafage and complement this result by presenting a simple $n^{O(l)}$-time algorithm. To our surprise, we find that Multiway Cut with Undeletable Terminals on chordal graphs can be solved, in contrast, in $n^{O(1)}$-time.

cs.DS↗

arXiv2022

The complexity of blocking (semi)total dominating sets with edge contractions

We consider the problem of reducing the (semi)total domination number of graph by one by contracting edges. It is known that this can always be done with at most three edge contractions and that deciding whether one edge contraction suffices is an $\mathsf{NP}$-hard problem. We show that for every fixed $k \in \{2,3\}$, deciding whether exactly $k$ edge contractions are necessary is $\mathsf{NP}$-hard and further provide for $k=2$ complete complexity dichotomies on monogenic graph classes.

cs.DM↗

arXiv2022

Parameterized Complexity of Weighted Multicut in Trees

The Edge Multicut problem is a classical cut problem where given an undirected graph $G$, a set of pairs of vertices $\mathcal{P}$, and a budget $k$, the goal is to determine if there is a set $S$ of at most $k$ edges such that for each $(s,t) \in \mathcal{P}$, $G-S$ has no path from $s$ to $t$. Edge Multicut has been relatively recently shown to be fixed-parameter tractable (FPT), parameterized by $k$, by Marx and Razgon [SICOMP 2014], and independently by Bousquet et al. [SICOMP 2018]. In the weighted version of the problem, called Weighted Edge Multicut one is additionally given a weight function $\mathtt{wt} : E(G) \to \mathbb{N}$ and a weight bound $w$, and the goal is to determine if there is a solution of size at most $k$ and weight at most $w$. Both the FPT algorithms for Edge Multicut by Marx et al. and Bousquet et al. fail to generalize to the weighted setting. In fact, the weighted problem is non-trivial even on trees and determining whether Weighted Edge Multicut on trees is FPT was explicitly posed as an open problem by Bousquet et al. [STACS 2009]. In this article, we answer this question positively by designing an algorithm which uses a very recent result by Kim et al. [STOC 2022] about directed flow augmentation as subroutine. We also study a variant of this problem where there is no bound on the size of the solution, but the parameter is a structural property of the input, for example, the number of leaves of the tree. We strengthen our results by stating them for the more general vertex deletion version.

cs.DS↗

arXiv2021

Using edge contractions to reduce the semitotal domination number

In this paper, we consider the problem of reducing the semitotal domination number of a given graph by contracting $k$ edges, for some fixed $k \geq 1$. We show that this can always be done with at most 3 edge contractions and further characterise those graphs requiring 1, 2 or 3 edge contractions, respectively, to decrease their semitotal domination number. We then study the complexity of the problem for $k=1$ and obtain in particular a complete complexity dichotomy for monogenic classes.

math.CO↗

arXiv2020

Reducing the domination number of $P_3+kP_2$-free graphs via one edge contraction

In this note, we consider the following problem: given a connected graph $G$, can we reduce the domination number of $G$ by using only one edge contraction? We show that the problem is polynomial-time solvable on $P_3+kP_2$-free graphs for any $k \geq 0$ which combined with results of [1,2] leads to a complexity dichotomy of the problem on $H$-free graphs.

math.CO↗

arXiv2020

Blocking total dominating sets via edge contractions

In this paper, we study the problem of deciding whether the total domination number of a given graph $G$ can be reduced using exactly one edge contraction (called 1-Edge Contraction($γ_t$)). We focus on several graph classes and determine the computational complexity of this problem. By putting together these results, we manage to obtain a complete dichotomy for $H$-free graphs.

cs.DM↗

arXiv2020

Approximating Independent Set and Dominating Set on VPG graphs

We consider Independent Set and Dominating Set restricted to VPG graphs (or, equivalently, string graphs). We show that they both remain $\mathsf{NP}$-hard on $B_0$-VPG graphs admitting a representation such that each grid-edge belongs to at most one path and each horizontal path has length at most two. On the other hand, combining the well-known Baker's shifting technique with bounded mim-width arguments, we provide simple PTASes on VPG graphs admitting a representation such that each grid-edge belongs to at most $t$ paths and the length of the horizontal part of each path is at most $c$, for some $c \geq 1$.

cs.DS↗

arXiv2020

CPG graphs: Some structural and hardness results

In this paper we continue the systematic study of Contact graphs of Paths on a Grid (CPG graphs) initiated in [Deniz et al., 2018]. A CPG graph is a graph for which there exists a collection of pairwise interiorly disjoint paths on a grid in one-to-one correspondence with its vertex set such that two vertices are adjacent if and only if the corresponding paths touch at a grid-point. If every such path has at most $k$ bends for some $k \geq 0$, the graph is said to be $B_k$-CPG. We first show that, for any $k \geq 0$, the class of $B_k$-CPG graphs is strictly contained in the class of $B_{k+1}$-CPG graphs even within the class of planar graphs, thus implying that there exists no $k \geq 0$ such that every planar CPG graph is $B_k$-CPG. The main result of the paper is that recognizing CPG graphs and $B_k$-CPG graphs with $k \geq 1$ is $\mathsf{NP}$-complete. Moreover, we show that the same remains true even within the class of planar graphs in the case $k \geq 3$. We then consider several graph problems restricted to CPG graphs and show, in particular, that Independent Set and Clique Cover remain $\mathsf{NP}$-hard for $B_0$-CPG graphs. Finally, we consider the related classes $B_k$-EPG of edge-intersection graphs of paths with at most $k$ bends on a grid. Although it is possible to optimally color a $B_0$-EPG graph in polynomial time, as this class coincides with that of interval graphs, we show that, in contrast, 3-Colorability is $\mathsf{NP}$-complete for $B_1$-EPG graphs.

cs.CG↗

arXiv2019

Characterising circular-arc contact $B_0$-VPG graphs

A contact $B_0$-VPG graph is a graph for which there exists a collection of nontrivial pairwise interiorly disjoint horizontal and vertical segments in one-to-one correspondence with its vertex set such that two vertices are adjacent if and only if the corresponding segments touch. It was shown by Deniz et al. that Recognition is $\mathsf{NP}$-complete for contact $B_0$-VPG graphs. In this paper we present a minimal forbidden induced subgraph characterisation of contact $B_0$-VPG graphs within the class of circular-arc graphs and provide a polynomial-time algorithm for recognising these graphs.

cs.DM↗

arXiv2019

Blocking dominating sets for $H$-free graphs via edge contractions

In this paper, we consider the following problem: given a connected graph $G$, can we reduce the domination number of $G$ by one by using only one edge contraction? We show that the problem is $\mathsf{NP}$-hard when restricted to $\{P_6,P_4+P_2\}$-free graphs and that it is $\mathsf{coNP}$-hard when restricted to subcubic claw-free graphs and $2P_3$-free graphs. As a consequence, we are able to establish a complexity dichotomy for the problem on $H$-free graphs when $H$ is connected.

cs.DM↗