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Evan Kwiatkowski

Publications and source records attributed to Evan Kwiatkowski.

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Bivariate Prior Specification for Bayesian Decision Making in Early Phase Clinical Trials

Bayesian Go/No-Go decisions with co-primary endpoints require specifying prior distributions under the Normal-Inverse-Wishart framework; however guidance on how prior hyperparameters influence trial decisions remains limited. We propose a calibrated prior specification framework for bivariate Go/No-Go decisions. Skeptical and enthusiastic priors are calibrated so that each assigns a target probability to a clinically relevant decision region. We prove that for any prior precision $\kappa > 0$, a unique scale parameter $\lambda_0$ achieves the target calibration. Operating characteristics are evaluated across different $\kappa $ via simulation and applied to a phase~3 telitacicept lupus trial.The simulation result indicates $\kappa$ is the primary driver of prior discrimination. At $\kappa = 1$, the go rate difference between priors was 0.07; at $\kappa = 10$ it reached 0.56, with false positive rates below 0.01. Operating characteristics were robust to the degrees of freedom parameter $\nu_0$ and prior correlation $\rho_0$, supporting a default of $\nu_0 = 2$. In the lupus application, prior sensitivity was negligible at $\kappa = 1$ but at $\kappa = 10$ the enthusiastic go rate was three times the skeptical rate at small sample sizes. The framework reduces prior specification to two choices: the prior center and the prior precision $\kappa$. The identification of $\kappa$ as the dominant parameter, together with the cautious choice of $\kappa$ before the trial, motivates adaptive approaches to prior precision.

stat.ME

Bayesian Geostatistical Modeling for Cluster Randomized Trials

Cluster randomized trials (CRTs) offer a practical alternative for addressing logistical challenges and ensuring feasibility in community health, education, and prevention studies, even though individually-randomized controlled trials are considered the gold standard in evaluating therapeutic interventions. Despite their utility, CRTs are often criticized for limited precision and complex modeling requirements. Advances in robust Bayesian methods and the incorporation of spatial correlation into CRT design and analysis remain relatively underdeveloped. This paper introduces a Bayesian geostatistical framework that models individuals nested within geographic clusters while explicitly accounting for spatial dependence. We demonstrate that conventional non-spatial models are susceptible to underestimating uncertainty and lead to misleading inferences, whereas our spatial approach improves estimation stability, controls type I error, and enhances statistical power. Additionally, we explore design implications that are suggested through the exploration of spatial predictive uncertainty. Our results of simulation and real-world data application demonstrate the value and need for wider adoption of spatial methods in CRTs.

stat.ME

Case Weighted Adaptive Power Priors for Hybrid Control Analyses with Time-to-Event Data

We develop a method for hybrid analyses that uses external controls to augment internal control arms in randomized controlled trials (RCT) where the degree of borrowing is determined based on similarity between RCT and external control patients to account for systematic differences (e.g. unmeasured confounders). The method represents a novel extension of the power prior where discounting weights are computed separately for each external control based on compatibility with the randomized control data. The discounting weights are determined using the predictive distribution for the external controls derived via the posterior distribution for time-to-event parameters estimated from the RCT. This method is applied using a proportional hazards regression model with piecewise constant baseline hazard. A simulation study and a real-data example are presented based on a completed trial in non-small cell lung cancer. It is shown that the case weighted adaptive power prior provides robust inference under various forms of incompatibility between the external controls and RCT population.

stat.ME

Convergence of the Square Root Ensemble Kalman Filter in the Large Ensemble Limit

Ensemble filters implement sequential Bayesian estimation by representing the probability distribution by an ensemble mean and covariance. Unbiased square root ensemble filters use deterministic algorithms to produce an analysis (posterior) ensemble with prescribed mean and covariance, consistent with the Kalman update. This includes several filters used in practice, such as the Ensemble Transform Kalman Filter (ETKF), the Ensemble Adjustment Kalman Filter (EAKF), and a filter by Whitaker and Hamill. We show that at every time index, as the number of ensemble members increases to infinity, the mean and covariance of an unbiased ensemble square root filter converge to those of the Kalman filter, in the case a linear model and an initial distribution of which all moments exist. The convergence is in $L^{p}$ and the convergence rate does not depend on the model dimension. The result holds in the infinitely dimensional Hilbert space as well.

math.ST