arXiv subjects

F. C. MacKintosh

Publications and source records attributed to F. C. MacKintosh.

At least 37 records · Page 2Linked to original sources

arXiv2011

Nonlinear effective medium theory of disordered spring networks

Disordered soft materials, such as fibrous networks in biological contexts exhibit a nonlinear elastic response. We study such nonlinear behavior with a minimal model for networks on lattice geometries with simple Hookian elements with disordered spring constant. By developing a mean-field approach to calculate the differential elastic bulk modulus for the macroscopic network response of such networks under large isotropic deformations, we provide insight into the origins of the strain stiffening and softening behavior of these systems. We find that the nonlinear mechanics depends only weakly on the lattice geometry and is governed by the average network connectivity. In particular, the nonlinear response is controlled by the isostatic connectivity, which depends strongly on the applied strain. Our predictions for the strain dependence of the isostatic point as well as the strain-dependent differential bulk modulus agree well with numerical results in both two and three dimensions. In addition, by using a mapping between the disordered network and a regular network with random forces, we calculate the non-affine fluctuations of the deformation field and compare it to the numerical results. Finally, we discuss the limitations and implications of the developed theory.

cond-mat.soft↗

arXiv2011

Mechanics and force transmission in soft composites of rods in elastic gels

We report detailed theoretical investigations of the micro-mechanics and bulk elastic properties of composites consisting of randomly distributed stiff fibers embedded in an elastic matrix in two and three dimensions. Recent experiments published in Physical Review Letters [102, 188303 (2009)] have suggested that the inclusion of stiff microtubules in a softer, nearly incompressible biopolymer matrix can lead to emergent compressibility. This can be understood in terms of the enhancement of the compressibility of the composite relative to its shear compliance as a result of the addition of stiff rod-like inclusions. We show that the Poisson's ratio $ν$ of such a composite evolves with increasing rod density towards a particular value, or {\em fixed point}, independent of the material properties of the matrix, so long as it has a finite initial compressibility. This fixed point is $ν=1/4$ in three dimensions and $ν=1/3$ in two dimensions. Our results suggest an important role for stiff filaments such as microtubules and stress fibers in cell mechanics. At the same time, our work has a wider elasticity context, with potential applications to composite elastic media with a wide separation of scales in stiffness of its constituents such as carbon nanotube-polymer composites, which have been shown to have highly tunable mechanics.

cond-mat.soft↗

arXiv2010

Criticality and isostaticity in fiber networks

The rigidity of elastic networks depends sensitively on their internal connectivity and the nature of the interactions between constituents. Particles interacting via central forces undergo a zero-temperature rigidity-percolation transition near the isostatic threshold, where the constraints and internal degrees of freedom are equal in number. Fibrous networks, such as those that form the cellular cytoskeleton, become rigid at a lower threshold due to additional bending constraints. However, the degree to which bending governs network mechanics remains a subject of considerable debate. We study disordered fibrous networks with variable coordination number, both above and below the central-force isostatic point. This point controls a broad crossover from stretching- to bending-dominated elasticity. Strikingly, this crossover exhibits an anomalous power-law dependence of the shear modulus on both stretching and bending rigidities. At the central-force isostatic point---well above the rigidity threshold---we find divergent strain fluctuations together with a divergent correlation length $ξ$, implying a breakdown of continuum elasticity in this simple mechanical system on length scales less than $ξ$.

cond-mat.soft↗

arXiv2010

Molecular motors stiffen non-affine semiflexible polymer networks

Reconstituted filamentous actin networks with myosin motor proteins form active gels, in which motor proteins generate forces that drive the network far from equilibrium. This motor activity can also strongly affect the network elasticity; experiments have shown a dramatic stiffening in in vitro networks with molecular motors. Here we study the effects of motor generated forces on the mechanics of simulated 2D networks of athermal stiff filaments. We show how heterogeneous internal motor stresses can lead to stiffening in networks that are governed by filament bending modes. The motors are modeled as force dipoles that cause muscle like contractions. These contractions "pull out" the floppy bending modes in the system, which induces a cross-over to a stiffer stretching dominated regime. Through this mechanism, motors can lead to a nonlinear network response, even when the constituent filaments are themselves purely linear. These results have implications for the mechanics of living cells and suggest new design principles for active biomemetic materials with tunable mechanical properties.

cond-mat.soft↗

arXiv2010

Poisson's ratio in composite elastic media with rigid rods

We study the elastic response of composites of rods embedded in elastic media. We calculate the micro-mechanical response functions, and bulk elastic constants as functions of rod density. We find two fixed points for Poisson's ratio with respect to the addition of rods in 3D composites: there is an unstable fixed point for Poisson's ratio=1/2 (an incompressible system) and a stable fixed point for Poisson's ratio=1/4 (a compressible system). We also derive an approximate expression for the elastic constants for arbitrary rod density that yields exact results for both low and high density. These results may help to explain recent experiments [Physical Review Letters 102, 188303 (2009)] that reported compressibility for composites of microtubules in F-actin networks.

cond-mat.mtrl-sci↗

arXiv2009

Unraveling DNA tori under tension

Motivated by recent experiments, we develop a model for DNA toroids under external tension. We find that tori are the equilibrium states for our model up to a critical tension, above which they become only metstable. Above this tension, we find a cascade of transitions between discrete toroid states that successively lowers the winding number, until the ground state (rod) is reached. In this process, this model predicts a nearly constant force plateau as a function of extension, in agreement with experiment.

physics.bio-ph↗

arXiv2008

Effective medium approach for stiff polymer networks with flexible cross-links

Recent experiments have demonstrated that the nonlinear elasticity of in vitro networks of the biopolymer actin is dramatically altered in the presence of a flexible cross-linker such as the abundant cytoskeletal protein filamin. The basic principles of such networks remain poorly understood. Here we describe an effective medium theory of flexibly cross-linked stiff polymer networks. We argue that the response of the cross-links can be fully attributed to entropic stiffening, while softening due to domain unfolding can be ignored. The network is modeled as a collection of randomly oriented rods connected by flexible cross-links to an elastic continuum. This effective medium is treated in a linear elastic limit as well as in a more general framework, in which the medium self-consistently represents the nonlinear network behavior. This model predicts that the nonlinear elastic response sets in at strains proportional to cross-linker length and inversely proportional to filament length. Furthermore, we find that the differential modulus scales linearly with the stress in the stiffening regime. These results are in excellent agreement with bulk rheology data.

cond-mat.soft↗

arXiv2008

Nonlinear elasticity of composite networks of stiff biopolymers with flexible linkers

Motivated by recent experiments showing nonlinear elasticity of in vitro networks of the biopolymer actin cross-linked with filamin, we present an effective medium theory of flexibly cross-linked stiff polymer networks. We model such networks by randomly oriented elastic rods connected by flexible connectors to a surrounding elastic continuum, which self-consistently represents the behavior of the rest of the network. This model yields a crossover from a linear elastic regime to a highly nonlinear elastic regime that stiffens in a way quantitatively consistent with experiment.

cond-mat.soft↗

arXiv2008

Buckling and force propagation along intracellular microtubules

Motivated by recent experiments showing the buckling of microtubules in cells, we study theoretically the mechanical response of, and force propagation along elastic filaments embedded in a non-linear elastic medium. We find that, although embedded microtubules still buckle when their compressive load exceeds the critical value $f_c$ found earlier, the resulting deformation is restricted to a penetration depth that depends on both the non-linear material properties of the surrounding cytoskeleton, as well as the direct coupling of the microtubule to the cytoskeleton. The deformation amplitude depends on the applied load $f$ as $(f- f_c)^{1/2}$. This work shows how the range of compressive force transmission by microtubules can be as large as tens of microns and is governed by the mechanical coupling to the surrounding cytoskeleton.

cond-mat.soft↗

arXiv2008

Crosslinked networks of stiff filaments exhibit negative normal stress

Motivated by recent experiments showing that stiff biopolymer gels exhibit highly unusual negative normal elastic stresses, we develop a computational model for stiff polymer networks subject to large strains. In all cases, we find that such networks develop normal stresses that are both negative and of magnitude comparable to the corresponding shear stress. We find that these normal stresses coincide with other nonlinearities in our networks, and specifically with compressive bucking of the individual filaments. Our results suggest that negative normal stresses are a characteristic feature of stiff (bio)polymer gels that have been shown to exhibit strong nonlinear elastic properties.

cond-mat.soft↗

arXiv2008

Effective temperatures from the fluctuation-dissipation measurements in soft glassy materials

We have investigated the validity of the fluctuation-dissipation theorem (FDT) and the applicability of the concept of effective temperature in a number of non-equilibrium soft glassy materials. Using a combination of passive and active microrheology to measure displacement fluctuations and the mechanical response function of probe particles embedded in the materials, we have directly tested the validity of the FDT. Our results show no violation of the FDT over several decades in frequency (1-10$^4$ Hz) for hard sphere colloidal glasses and colloidal glasses and gels of Laponite. We further extended the bandwidth of our measurements to lower frequencies (down to 0.1 Hz) using video microscopy to measure the displacement fluctuations, again without finding any deviations from the FDT.

cond-mat.stat-mech↗

arXiv2008

Short-time inertial response of viscoelastic fluids measured with Brownian motion and with active probes

We have directly observed short-time stress propagation in viscoelastic fluids using two optically trapped particles and a fast interferometric particle-tracking technique. We have done this both by recording correlations in the thermal motion of the particles and by measuring the response of one particle to the actively oscillated second particle. Both methods detect the vortex-like flow patterns associated with stress propagation in fluids. This inertial vortex flow propagates diffusively for simple liquids, while for viscoelastic solutions the pattern spreads super-diffusively, dependent on the shear modulus of the medium.

cond-mat.soft↗

arXiv2007

High-bandwidth viscoelastic properties of aging colloidal glasses and gels

We report measurements of the frequency-dependent shear moduli of aging colloidal systems that evolve from a purely low-viscosity liquid to a predominantly elastic glass or gel. Using microrheology, we measure the local complex shear modulus $G^{*}(ω)$ over a very wide range of frequencies (1 Hz- 100 kHz). The combined use of one- and two-particle microrheology allows us to differentiate between colloidal glasses and gels - the glass is homogenous, whereas the colloidal gel shows a considerable degree of heterogeneity on length scales larger than 0.5 micrometer. Despite this characteristic difference, both systems exhibit similar rheological behavior which evolve in time with aging, showing a crossover from a single power-law frequency dependence of the viscoelastic modulus to a sum of two power laws. The crossover occurs at a time $t_{0}$, which defines a mechanical transition point. We found that the data acquired during the aging of different samples can be collapsed onto a single master curve by scaling the aging time with $t_{0}$. This raises questions about the prior interpretation of two power laws in terms of a superposition of an elastic network embedded in a viscoelastic background. Keywords: Aging, colloidal glass, passive microrheology

cond-mat.soft↗

arXiv2007

Non-equilibrium microtubule fluctuations in a model cytoskeleton

Biological activity gives rise to non-equilibrium fluctuations in the cytoplasm of cells; however, there are few methods to directly measure these fluctuations. Using a reconstituted actin cytoskeleton, we show that the bending dynamics of embedded microtubules can be used to probe local stress fluctuations. We add myosin motors that drive the network out of equilibrium, resulting in an increased amplitude and modified time-dependence of microtubule bending fluctuations. We show that this behavior results from step-like forces on the order of 10 pN driven by collective motor dynamics.

cond-mat.soft↗

arXiv2007

Effective medium theory of semiflexible filamentous networks

We develop an effective medium approach to the mechanics of disordered, semiflexible polymer networks and study the response of such networks to uniform and nonuniform strain. We identify distinct elastic regimes in which the contributions of either filament bending or stretching to the macroscopic modulus vanish. We also show that our effective medium theory predicts a crossover between affine and non-affine strain, consistent with both prior numerical studies and scaling theory.

cond-mat.soft↗

arXiv2007

Visualizing the strain field in semiflexible polymer networks: strain fluctuations and nonlinear rheology of F-actin gels

We image semi-flexible polymer networks under shear at the micrometer scale. By tracking embedded probe particles, we determine the local strain field, and directly measure its uniformity, or degree of affineness, on scales of 2-100 micron. The degree of nonaffine strain depends on polymer length and crosslink density, consistent with theoretical predictions. We also find a direct correspondence between the uniformity of the microscale strain and the nonlinear elasticity of the networks in the bulk.

cond-mat.soft↗

arXiv2005

The mechanical response of semiflexible networks to localized perturbations

Previous research on semiflexible polymers including cytoskeletal networks in cells has suggested the existence of distinct regimes of elastic response, in which the strain field is either uniform (affine) or non-uniform (non-affine) under external stress. Associated with these regimes, it has been further suggested that a new fundamental length scale emerges, which characterizes the scale for the crossover from non-affine to affine deformations. Here, we extend these studies by probing the response to localized forces and force dipoles. We show that the previously identified nonaffinity length [D.A. Head et al. PRE 68, 061907 (2003).] controls the mesoscopic response to point forces and the crossover to continuum elastic behavior at large distances.

cond-mat.soft↗

arXiv2003

Velocity distributions in dilute granular systems

Motivated by recent experiments reporting non-Gaussian velocity distributions in driven dilute granular materials, we study by numerical simulation the properties of inelastic gases as functions of the coefficient of restitution $η$ and concentration $ϕ$ with various heating mechanisms. We show that there are marked, qualitative differences in the behavior for uniform heating (as is frequently assumed theoretically) and for particle systems driven at the boundaries of the container (as is frequently done in experiments). In general, we find Gaussian velocity distributions for uniform heating and non-Gaussian velocity distributions for boundary heating. Furthermore, we demonstrate that the form of the observed velocity distribution is governed primarily by the coefficient of restitution $η$ and $q=N_H/N_C$, the ratio between the average number of heatings and the average number of collisions in the gas. The differences in distributions we find between uniform and boundary heating can then be understood as different limits of $q$, for $q \gg 1$ and $q \lesssim 1$ respectively. Moreover, we demonstrate that very similar behavior is found for a simple model of a gas of inelastic particles with no spatial degrees of freedom.

cond-mat.stat-mech↗