arXiv subjects

F. Family

Publications and source records attributed to F. Family.

6 recordsLinked to original sources

arXiv2016

Druse-Induced Morphology Evolution in Retinal Pigment Epithelium

The retinal pigment epithelium (RPE) is a key site of pathogenesis for many retina diseases. The formation of drusen in the retina is characteristic of retinal degeneration. We investigate morphological changes in the RPE in the presence of soft drusen using an integrated experimental and modeling approach. We collect RPE flat mount images from donated human eyes and develop 1) statistical tools to quantify the images and 2) a cell-based model to simulate the morphology evolution. We compare three different mechanisms of RPE repair evolution, cell apoptosis, cell fusion, and expansion, and Simulations of our RPE morphogenesis model quantitatively reproduce deformations of human RPE morphology due to drusen, suggesting that a purse-string mechanism is sufficient to explain how RPE heals cell loss caused by drusen-damage. We found that drusen beneath tissue promote cell death in a number that far exceeds the cell numbers covering the drusen. Tissue deformations are studied using area distributions, Voronoi domains and a texture tensor.

q-bio.TO↗

arXiv2007

Entropic Studies of Cytoskeletal Motors Jamming

Can the different causes for disruption of intracellular transport be traced from the trajectories of the molecular motors on the cytoskeletal filaments? We will attempt to answer this important question in a Monte Carlo model of microtubule-motor protein interaction from the point of view of information theory.

cond-mat.soft↗

arXiv2007

Trapping mechanism in overdamped ratchets with quenched noise

A trapping mechanism is observed and proposed as the origin of the anomalous behavior recently discovered in transport properties of overdamped ratchets subject to external oscillatory drive in the presence of quenched noise. In particular, this mechanism is shown to appear whenever the quenched disorder strength is greater than a threshold value. The minimum disorder strength required for the existence of traps is determined by studying the trap structure in a disorder configuration space. An approximation to the trapping probability density function in a disordered region of finite length included in an otherwise perfect ratchet lattice is obtained. The mean velocity of the particles and the diffusion coefficient are found to have a non-monotonic dependence on the quenched noise strength due to the presence of the traps.

cond-mat.stat-mech↗

arXiv2003

Diffusion Limited Aggregation with Power-Law Pinning

Using stochastic conformal mapping techniques we study the patterns emerging from Laplacian growth with a power-law decaying threshold for growth $R_N^{-γ}$ (where $R_N$ is the radius of the $N-$ particle cluster). For $γ> 1$ the growth pattern is in the same universality class as diffusion limited aggregation (DLA) growth, while for $γ< 1$ the resulting patterns have a lower fractal dimension $D(γ)$ than a DLA cluster due to the enhancement of growth at the hot tips of the developing pattern. Our results indicate that a pinning transition occurs at $γ= 1/2$, significantly smaller than might be expected from the lower bound $α_{min} \simeq 0.67$ of multifractal spectrum of DLA. This limiting case shows that the most singular tips in the pruned cluster now correspond to those expected for a purely one-dimensional line. Using multifractal analysis, analytic expressions are established for $D(γ)$ both close to the breakdown of DLA universality class, i.e., $γ\lesssim 1$, and close to the pinning transition, i.e., $γ\gtrsim 1/2$.

cond-mat.stat-mech↗

arXiv2003

Anisotropic Diffusion Limited Aggregation

Using stochastic conformal mappings we study the effects of anisotropic perturbations on diffusion limited aggregation (DLA) in two dimensions. The harmonic measure of the growth probability for DLA can be conformally mapped onto a constant measure on a unit circle. Here we map $m$ preferred directions for growth of angular width $σ$ to a distribution on the unit circle which is a periodic function with $m$ peaks in $[-π, π)$ such that the width $σ$ of each peak scales as $σ\sim 1/\sqrt{k}$, where $k$ defines the ``strength'' of anisotropy along any of the $m$ chosen directions. The two parameters $(m,k)$ map out a parameter space of perturbations that allows a continuous transition from DLA (for $m=0$ or $k=0$) to $m$ needle-like fingers as $k \to \infty$. We show that at fixed $m$ the effective fractal dimension of the clusters $D(m,k)$ obtained from mass-radius scaling decreases with increasing $k$ from $D_{DLA} \simeq 1.71$ to a value bounded from below by $D_{min} = 3/2$. Scaling arguments suggest a specific form for the dependence of the fractal dimension $D(m,k)$ on $k$ for large $k$, form which compares favorably with numerical results.

cond-mat.stat-mech↗

arXiv2000

Disorder Induced Diffusive Transport In Ratchets

The effects of quenched disorder on the overdamped motion of a driven particle on a periodic, asymmetric potential is studied. While for the unperturbed potential the transport is due to a regular drift, the quenched disorder induces a significant additional chaotic ``diffusive'' motion. The spatio-temporal evolution of the statistical ensemble is well described by a Gaussian distribution, implying a chaotic transport in the presence of quenched disorder.

cond-mat.soft↗