arXiv subjects

F. Peruani

Publications and source records attributed to F. Peruani.

4 recordsLinked to original sources

arXiv2025

Resource and population dynamics in an agent-environment interaction model

In any ecosystem, the conditions of the environment and the characteristics of the species that inhabit it are entangled, co-evolving in space and time. We introduce a model that couples active agents with a dynamic environment, interpreted as a nutrient source. Agents are persistent random walkers that gather food from the environment and store it in an inner energy depot. This energy is used for self-propulsion, metabolic expenses, and reproduction. The environment is a two-dimensional surface divided into patches, each of them producing food. Thus, population size and resource distribution become emergent properties of the system. Combining simulations and analytical framework to analyze limiting cases, we show that the system exhibits distinct phases separating quasi-static and highly motile regimes. We observe that, in general, population sizes are inversely proportional to the average energy per agent. Furthermore, we find that, counter-intuitively, reduced access to resources or increased metabolic expenditure can lead to a larger population size. The proposed theoretical framework provides a link between active matter and movement ecology, allowing to investigate short vs long-term strategies to resource exploitation and rationing, as well as sedentary vs wandering strategy. The introduced approach may serve as a tool to describe real-world ecological systems and to test environmental strategies to prevent species extinction.

q-bio.PE↗

arXiv2021

Kinetic and macroscopic models for active particles exploring complex environments with an internal navigation control system

A large number of biological systems - from bacteria to sheep - can be described as ensembles of self-propelled agents (active particles) with a complex internal dynamic that controls the agent's behavior: resting, moving slow, moving fast, feeding, etc. In this study, we assume that such a complex internal dynamic can be described by a Markov chain, which controls the moving direction, speed, and internal state of the agent. We refer to this Markov chain as the Navigation Control System (NCS). Furthermore, we model that agents sense the environment by considering that the transition rates of the NCS depend on local (scalar) measurement of the environment such as e.g. chemical concentrations, light intensity, or temperature. Here, we investigate under which conditions the (asymptotic) behavior of the agents can be reduced to an effective convection-diffusion equation for the density of the agents, providing effective expressions for the drift and diffusion terms. We apply the developed generic framework to a series of specific examples to show that in order to obtain a drift term two conditions should be fulfilled: i) the NCS transition rates should depend on the agent's position, and ii) transition rates should be asymmetric. In addition, we indicate that the sign of the drift term - i.e. whether agents develop a positive or negative chemotactic response - can be changed by modifying the asymmetry of the NCS or by swapping the speed associated to the internal states. The developed theoretical framework paves the way to model a large variety of biological systems and provides a solid proof that chemotactic responses can be developed, counterintuitively, by agents that cannot measure gradients and lack memory as to store past measurements of the environment.

physics.bio-ph↗

arXiv2009

Large-scale collective properties of self-propelled rods

We study, in two space dimensions, the large-scale properties of collections of constant-speed polar point particles interacting locally by nematic alignment in the presence of noise. This minimal approach to self-propelled rods allows one to deal with large numbers of particles, revealing a phenomenology previously unseen in more complicated models, and moreover distinctively different from both that of the purely polar case (e.g. the Vicsek model) and of active nematics.

cond-mat.soft↗

arXiv2006

Non-equilibrium clustering of self-propelled rods

Motivated by aggregation phenomena in gliding bacteria, we study collective motion in a twodimensional model of active, self-propelled rods interacting through volume exclusion. In simulations with individual particles, we find that particle clustering is facilitated by a sufficiently large packing fraction (eta) or length-to-width ratio (kappa). The transition to clustering in simulations is well captured by a mean-field model for the cluster size distribution, which predicts that the transition values kappa_c of the aspect ratio for a fixed packing fraction is given by kappa_c = C/eta - 1 where C is a constant.

cond-mat.soft↗