arXiv subjects

Fabian Gülhan

Publications and source records attributed to Fabian Gülhan.

4 recordsLinked to original sources

arXiv2026

An end-to-end-trained vision-language model for native-language prostate pathology report generation

Prostate cancer is among the most frequently diagnosed malignancies worldwide, and structured reporting of each biopsy core burdens pathologists. Existing tools frame this as classification, leaving pathologists to assemble coherent reports, while many slide-level vision-language models rely on English-centric encoders that transfer poorly to other clinical languages. We present a slide-level framework generating prostate biopsy reports that is language-independent by construction: tokenizer and model are trained from scratch, demonstrated here in German. To address paired-data scarcity, an automated pipeline uses a locally deployed large language model to split composite reports into core-specific image-text pairs, yielding 17,344 pairs from 2,402 historical cases without manual annotation. Evaluated for clinical attributes rather than linguistic similarity, the model achieves 96.2% F1 for malignancy detection and 65.2% for Gleason grading, competitive with an FDA-cleared classifier. Grading is further validated on three external cohorts with latent-space augmentation. Institutions can thus train native-language reporting models on their own archives.

cs.CV↗

arXiv2026

Paired Uterine Whole-Slide Images and Pathology Reports for Multimodal Computational Pathology

Uterine diseases represent an important category of gynecologic pathology and require accurate histopathological assessment for diagnosis and treatment planning. Whole-slide images (WSI) have enabled the digital transformation of pathology workflows and provided new opportunities for artificial intelligence (AI) in computational pathology. In particular, multimodal models that jointly analyze histopathology images and pathology reports have shown promising potential for automated pathology report generation and AI-assisted diagnosis. However, the development of such systems remains limited by the scarcity of datasets that pair whole-slide images with clinically meaningful pathology reports. Instead, existing pathology datasets focus on patch- or slide-level annotations of a single endpoint (e.g., disease class), which do not fully capture the rich information in full clinical diagnostic workflow reports. Here, we introduce TUM-Uteria, a uterine pathology dataset comprising WSIs paired with diagnostic pathology reports at both the case and slide levels, collected from a tertiary medical center. The dataset contains 216 clinical cases, comprising 455 slide-level WSI-report pairs. The dataset underwent a structured multi-stage validation procedure involving board-certified pathologists to ensure reliable annotations. TUM-Uteria supports research in computational pathology, including whole-slide image analysis, multimodal learning, and automated pathology report generation.

cs.CV↗

arXiv2025

SelfMOTR: Revisiting MOTR with Self-Generating Detection Priors

End-to-end transformer architectures have driven significant progress in multi-object tracking by unifying detection and association into a single, heuristic-free framework. Despite these benefits, poor detection performance and the inherent conflict between detection and association in a joint architecture remain critical concerns. Recent approaches aim to mitigate these issues by employing advanced denoising or label assignment strategies, or by incorporating detection priors from external object detectors. In this paper, we propose SelfMOTR, a simple yet highly effective detector-free alternative that decouples proposal discovery from association using self-generated internal detection priors. Through extensive analysis and ablation studies, we show that end-to-end transformer trackers with joint detection-association decoding retain substantial hidden detection capacity, and we provide a practical detector-free mechanism for leveraging it. To shed light on these joint decoding dynamics, we draw inspiration from attention sink analyses in large language models, leveraging Track Attention Mass to show that standard generic queries exhibit unbalanced attention, frequently struggling to weigh track context against novel object discovery. SelfMOTR achieves highly competitive performance in complex, dynamic environments, yielding 69.2 HOTA on DanceTrack and leading with 71.1 HOTA on the Bird Flock Tracking (BFT) dataset. Project page: https://medem23.github.io/SM

cs.CV↗

arXiv2025

SIS-Challenge: Event-based Spatio-temporal Instance Segmentation Challenge at the CVPR 2025 Event-based Vision Workshop

We present an overview of the Spatio-temporal Instance Segmentation (SIS) challenge held in conjunction with the CVPR 2025 Event-based Vision Workshop. The task is to predict accurate pixel-level segmentation masks of defined object classes from spatio-temporally aligned event camera and grayscale camera data. We provide an overview of the task, dataset, challenge details and results. Furthermore, we describe the methods used by the top-5 ranking teams in the challenge. More resources and code of the participants' methods are available here: https://github.com/tub-rip/MouseSIS/blob/main/docs/challenge_results.md

cs.CV↗