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Fang Han

Publications and source records attributed to Fang Han.

At least 37 records · Page 2Linked to original sources

Smoothed NPMLEs in nonparametric Poisson mixtures and beyond

We discuss nonparametric mixing distribution estimation under the Gaussian-smoothed optimal transport (GOT) distance. It is shown that a recently formulated conjecture -- that the Poisson nonparametric maximum likelihood estimator can achieve root-$n$ rate of convergence under the GOT distance -- holds up to some logarithmic terms. We also establish the same conclusion for other minimum-distance estimators, and discuss mixture models beyond the Poisson.

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On Rosenbaum's Rank-based Matching Estimator

In two influential contributions, Rosenbaum (2005, 2020) advocated for using the distances between component-wise ranks, instead of the original data values, to measure covariate similarity when constructing matching estimators of average treatment effects. While the intuitive benefits of using covariate ranks for matching estimation are apparent, there is no theoretical understanding of such procedures in the literature. We fill this gap by demonstrating that Rosenbaum's rank-based matching estimator, when coupled with a regression adjustment, enjoys the properties of double robustness and semiparametric efficiency without the need to enforce restrictive covariate moment assumptions. Our theoretical findings further emphasize the statistical virtues of employing ranks for estimation and inference, more broadly aligning with the insights put forth by Peter Bickel in his 2004 Rietz lecture (Bickel, 2004).

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On the adaptation of causal forests to manifold data

Researchers often hold the belief that random forests are "the cure to the world's ills" (Bickel, 2010). But how exactly do they achieve this? Focused on the recently introduced causal forests (Athey and Imbens, 2016; Wager and Athey, 2018), this manuscript aims to contribute to an ongoing research trend towards answering this question, proving that causal forests can adapt to the unknown covariate manifold structure. In particular, our analysis shows that a causal forest estimator can achieve the optimal rate of convergence for estimating the conditional average treatment effect, with the covariate dimension automatically replaced by the manifold dimension. These findings align with analogous observations in the realm of deep learning and resonate with the insights presented in Peter Bickel's 2004 Rietz lecture.

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STREAMLINE: An Automated Machine Learning Pipeline for Biomedicine Applied to Examine the Utility of Photography-Based Phenotypes for OSA Prediction Across International Sleep Centers

While machine learning (ML) includes a valuable array of tools for analyzing biomedical data, significant time and expertise is required to assemble effective, rigorous, and unbiased pipelines. Automated ML (AutoML) tools seek to facilitate ML application by automating a subset of analysis pipeline elements. In this study we develop and validate a Simple, Transparent, End-to-end Automated Machine Learning Pipeline (STREAMLINE) and apply it to investigate the added utility of photography-based phenotypes for predicting obstructive sleep apnea (OSA); a common and underdiagnosed condition associated with a variety of health, economic, and safety consequences. STREAMLINE is designed to tackle biomedical binary classification tasks while adhering to best practices and accommodating complexity, scalability, reproducibility, customization, and model interpretation. Benchmarking analyses validated the efficacy of STREAMLINE across data simulations with increasingly complex patterns of association. Then we applied STREAMLINE to evaluate the utility of demographics (DEM), self-reported comorbidities (DX), symptoms (SYM), and photography-based craniofacial (CF) and intraoral (IO) anatomy measures in predicting any OSA or moderate/severe OSA using 3,111 participants from Sleep Apnea Global Interdisciplinary Consortium (SAGIC). OSA analyses identified a significant increase in ROC-AUC when adding CF to DEM+DX+SYM to predict moderate/severe OSA. A consistent but non-significant increase in PRC-AUC was observed with the addition of each subsequent feature set to predict any OSA, with CF and IO yielding minimal improvements. Application of STREAMLINE to OSA data suggests that CF features provide additional value in predicting moderate/severe OSA, but neither CF nor IO features meaningfully improved the prediction of any OSA beyond established demographics, comorbidity and symptom characteristics.

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On propensity score matching with a diverging number of matches

This paper reexamines Abadie and Imbens (2016)'s work on propensity score matching for average treatment effect estimation. We explore the asymptotic behavior of these estimators when the number of nearest neighbors, $M$, grows with the sample size. It is shown, hardly surprising but technically nontrivial, that the modified estimators can improve upon the original fixed-$M$ estimators in terms of efficiency. Additionally, we demonstrate the potential to attain the semiparametric efficiency lower bound when the propensity score achieves "sufficient" dimension reduction, echoing Hahn (1998)'s insight about the role of dimension reduction in propensity score-based causal inference.

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On the failure of the bootstrap for Chatterjee's rank correlation

While researchers commonly use the bootstrap for statistical inference, many of us have realized that the standard bootstrap, in general, does not work for Chatterjee's rank correlation. In this paper, we provide proof of this issue under an additional independence assumption, and complement our theory with simulation evidence for general settings. Chatterjee's rank correlation thus falls into a category of statistics that are asymptotically normal but bootstrap inconsistent. Valid inferential methods in this case are Chatterjee's original proposal (for testing independence) and Lin and Han (2022)'s analytic asymptotic variance estimator (for more general purposes).

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On regression-adjusted imputation estimators of the average treatment effect

Imputing missing potential outcomes using an estimated regression function is a natural idea for estimating causal effects. In the literature, estimators that combine imputation and regression adjustments are believed to be comparable to augmented inverse probability weighting. Accordingly, people for a long time conjectured that such estimators, while avoiding directly constructing the weights, are also doubly robust (Imbens, 2004; Stuart, 2010). Generalizing an earlier result of the authors (Lin et al., 2021), this paper formalizes this conjecture, showing that a large class of regression-adjusted imputation methods are indeed doubly robust for estimating the average treatment effect. In addition, they are provably semiparametrically efficient as long as both the density and regression models are correctly specified. Notable examples of imputation methods covered by our theory include kernel matching, (weighted) nearest neighbor matching, local linear matching, and (honest) random forests.

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On Azadkia-Chatterjee's conditional dependence coefficient

In recent work, Azadkia and Chatterjee (2021) laid out an ingenious approach to defining consistent measures of conditional dependence. Their fully nonparametric approach forms statistics based on ranks and nearest neighbor graphs. The appealing nonparametric consistency of the resulting conditional dependence measure and the associated empirical conditional dependence coefficient has quickly prompted follow-up work that seeks to study its statistical efficiency. In this paper, we take up the framework of conditional randomization tests (CRT) for conditional independence and conduct a power analysis that considers two types of local alternatives, namely, parametric quadratic mean differentiable alternatives and nonparametric Hölder smooth alternatives. Our local power analysis shows that conditional independence tests using the Azadkia--Chatterjee coefficient remain inefficient even when aided with the CRT framework, and serves as motivation to develop variants of the approach; cf. Lin and Han (2022b). As a byproduct, we resolve a conjecture of Azadkia and Chatterjee by proving central limit theorems for the considered conditional dependence coefficients, with explicit formulas for the asymptotic variances.

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Azadkia-Chatterjee's correlation coefficient adapts to manifold data

In their seminal work, Azadkia and Chatterjee (2021) initiated graph-based methods for measuring variable dependence strength. By appealing to nearest neighbor graphs, they gave an elegant solution to a problem of Rényi (Rényi, 1959). Their idea was later developed in Deb et al. (2020) and the authors there proved that, quite interestingly, Azadkia and Chatterjee's correlation coefficient can automatically adapt to the manifold structure of the data. This paper furthers their study in terms of calculating the statistic's limiting variance under independence and showing that it only depends on the manifold dimension.

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Estimation based on nearest neighbor matching: from density ratio to average treatment effect

Nearest neighbor (NN) matching as a tool to align data sampled from different groups is both conceptually natural and practically well-used. In a landmark paper, Abadie and Imbens (2006) provided the first large-sample analysis of NN matching under, however, a crucial assumption that the number of NNs, $M$, is fixed. This manuscript reveals something new out of their study and shows that, once allowing $M$ to diverge with the sample size, an intrinsic statistic in their analysis actually constitutes a consistent estimator of the density ratio. Furthermore, through selecting a suitable $M$, this statistic can attain the minimax lower bound of estimation over a Lipschitz density function class. Consequently, with a diverging $M$, the NN matching provably yields a doubly robust estimator of the average treatment effect and is semiparametrically efficient if the density functions are sufficiently smooth and the outcome model is appropriately specified. It can thus be viewed as a precursor of double machine learning estimators.

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Nonparametric mixture MLEs under Gaussian-smoothed optimal transport distance

The Gaussian-smoothed optimal transport (GOT) framework, pioneered in Goldfeld et al. (2020) and followed up by a series of subsequent papers, has quickly caught attention among researchers in statistics, machine learning, information theory, and related fields. One key observation made therein is that, by adapting to the GOT framework instead of its unsmoothed counterpart, the curse of dimensionality for using the empirical measure to approximate the true data generating distribution can be lifted. The current paper shows that a related observation applies to the estimation of nonparametric mixing distributions in discrete exponential family models, where under the GOT cost the estimation accuracy of the nonparametric MLE can be accelerated to a polynomial rate. This is in sharp contrast to the classical sub-polynomial rates based on unsmoothed metrics, which cannot be improved from an information-theoretical perspective. A key step in our analysis is the establishment of a new Jackson-type approximation bound of Gaussian-convoluted Lipschitz functions. This insight bridges existing techniques of analyzing the nonparametric MLEs and the new GOT framework.

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On boosting the power of Chatterjee's rank correlation

Chatterjee (2021)'s ingenious approach to estimating a measure of dependence first proposed by Dette et al. (2013) based on simple rank statistics has quickly caught attention. This measure of dependence has the unusual property of being between 0 and 1, and being 0 or 1 if and only if the corresponding pair of random variables is independent or one is a measurable function of the other almost surely. However, more recent studies (Cao and Bickel, 2020; Shi et al., 2021b) showed that independence tests based on Chatterjee's rank correlation are unfortunately rate-inefficient against various local alternatives and they call for variants. We answer this call by proposing revised Chatterjee's rank correlations that still consistently estimate the same dependence measure but provably achieve near-parametric efficiency in testing against Gaussian rotation alternatives. This is possible via incorporating many right nearest neighbors in constructing the correlation coefficients. We thus overcome the "only one disadvantage" of Chatterjee's rank correlation (Chatterjee, 2021, Section 7).

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Fisher-Pitman permutation tests based on nonparametric Poisson mixtures with application to single cell genomics

This paper investigates the theoretical and empirical performance of Fisher-Pitman-type permutation tests for assessing the equality of unknown Poisson mixture distributions. Building on nonparametric maximum likelihood estimators (NPMLEs) of the mixing distribution, these tests are theoretically shown to be able to adapt to complicated unspecified structures of count data and also consistent against their corresponding ANOVA-type alternatives; the latter is a result in parallel to classic claims made by Robinson (Robinson, 1973). The studied methods are then applied to a single-cell RNA-seq data obtained from different cell types from brain samples of autism subjects and healthy controls; empirically, they unveil genes that are differentially expressed between autism and control subjects yet are missed using common tests. For justifying their use, rate optimality of NPMLEs is also established in settings similar to nonparametric Gaussian (Wu and Yang, 2020a) and binomial mixtures (Tian et al., 2017; Vinayak et al., 2019).

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On universally consistent and fully distribution-free rank tests of vector independence

Rank correlations have found many innovative applications in the last decade. In particular, suitable rank correlations have been used for consistent tests of independence between pairs of random variables. Using ranks is especially appealing for continuous data as tests become distribution-free. However, the traditional concept of ranks relies on ordering data and is, thus, tied to univariate observations. As a result, it has long remained unclear how one may construct distribution-free yet consistent tests of independence between random vectors. This is the problem addressed in this paper, in which we lay out a general framework for designing dependence measures that give tests of multivariate independence that are not only consistent and distribution-free but which we also prove to be statistically efficient. Our framework leverages the recently introduced concept of center-outward ranks and signs, a multivariate generalization of traditional ranks, and adopts a common standard form for dependence measures that encompasses many popular examples. In a unified study, we derive a general asymptotic representation of center-outward rank-based test statistics under independence, extending to the multivariate setting the classical Hájek asymptotic representation results. This representation permits direct calculation of limiting null distributions and facilitates a local power analysis that provides strong support for the center-outward approach by establishing, for the first time, the nontrivial power of center-outward rank-based tests over root-$n$ neighborhoods within the class of quadratic mean differentiable alternatives.

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On the power of Chatterjee rank correlation

Chatterjee (2021) introduced a simple new rank correlation coefficient that has attracted much recent attention. The coefficient has the unusual appeal that it not only estimates a population quantity first proposed by Dette et al. (2013) that is zero if and only if the underlying pair of random variables is independent, but also is asymptotically normal under independence. This paper compares Chatterjee's new correlation coefficient to three established rank correlations that also facilitate consistent tests of independence, namely, Hoeffding's $D$, Blum-Kiefer-Rosenblatt's $R$, and Bergsma-Dassios-Yanagimoto's $τ^*$. We contrast their computational efficiency in light of recent advances, and investigate their power against local rotation and mixture alternatives. Our main results show that Chatterjee's coefficient is unfortunately rate sub-optimal compared to $D$, $R$, and $τ^*$. The situation is more subtle for a related earlier estimator of Dette et al. (2013). These results favor $D$, $R$, and $τ^*$ over Chatterjee's new correlation coefficient for the purpose of testing independence.

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Robust Functional Principal Component Analysis via Functional Pairwise Spatial Signs

Functional principal component analysis (FPCA) has been widely used to capture major modes of variation and reduce dimensions in functional data analysis. However, standard FPCA based on the sample covariance estimator does not work well in the presence of outliers. To address this challenge, a new robust functional principal component analysis approach based on the functional pairwise spatial sign (PASS) operator, termed PASS FPCA, is introduced where we propose estimation procedures for both eigenfunctions and eigenvalues with and without measurement error. Compared to existing robust FPCA methods, the proposed one requires weaker distributional assumptions to conserve the eigenspace of the covariance function. In particular, a class of distributions called the weakly functional coordinate symmetric (weakly FCS) is introduced that allows for severe asymmetry and is strictly larger than the functional elliptical distribution class, the latter of which has been well used in the robust statistics literature. The robustness of the PASS FPCA is demonstrated via simulation studies and analyses of accelerometry data from a large-scale epidemiological study of physical activity on older women that partly motivates this work.

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Distribution-free consistent independence tests via center-outward ranks and signs

This paper investigates the problem of testing independence of two random vectors of general dimensions. For this, we give for the first time a distribution-free consistent test. Our approach combines distance covariance with the center-outward ranks and signs developed in Hallin (2017). In technical terms, the proposed test is consistent and distribution-free in the family of multivariate distributions with nonvanishing (Lebesgue) probability densities. Exploiting the (degenerate) U-statistic structure of the distance covariance and the combinatorial nature of Hallin's center-outward ranks and signs, we are able to derive the limiting null distribution of our test statistic. The resulting asymptotic approximation is accurate already for moderate sample sizes and makes the test implementable without requiring permutation. The limiting distribution is derived via a more general result that gives a new type of combinatorial non-central limit theorem for double- and multiple-indexed permutation statistics.

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On a phase transition in general order spline regression

In the Gaussian sequence model $Y= θ_0 + \varepsilon$ in $\mathbb{R}^n$, we study the fundamental limit of approximating the signal $θ_0$ by a class $Θ(d,d_0,k)$ of (generalized) splines with free knots. Here $d$ is the degree of the spline, $d_0$ is the order of differentiability at each inner knot, and $k$ is the maximal number of pieces. We show that, given any integer $d\geq 0$ and $d_0\in\{-1,0,\ldots,d-1\}$, the minimax rate of estimation over $Θ(d,d_0,k)$ exhibits the following phase transition: \begin{equation*} \begin{aligned} \inf_{\widetildeθ}\sup_{θ\inΘ(d,d_0, k)}\mathbb{E}_θ\|\widetildeθ - θ\|^2 \asymp_d \begin{cases} k\log\log(16n/k), & 2\leq k\leq k_0,\\ k\log(en/k), & k \geq k_0+1. \end{cases} \end{aligned} \end{equation*} The transition boundary $k_0$, which takes the form $\lfloor{(d+1)/(d-d_0)\rfloor} + 1$, demonstrates the critical role of the regularity parameter $d_0$ in the separation between a faster $\log \log(16n)$ and a slower $\log(en)$ rate. We further show that, once encouraging an additional '$d$-monotonicity' shape constraint (including monotonicity for $d = 0$ and convexity for $d=1$), the above phase transition is eliminated and the faster $k\log\log(16n/k)$ rate can be achieved for all $k$. These results provide theoretical support for developing $\ell_0$-penalized (shape-constrained) spline regression procedures as useful alternatives to $\ell_1$- and $\ell_2$-penalized ones.

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