arXiv subjects

Fang Sheng

Publications and source records attributed to Fang Sheng.

6 recordsLinked to original sources

arXiv2026

Synthesizing like a chemist: an iterative, feedback-driven loop for materials discovery

Most computationally predicted materials are never synthesized because conventional synthesis optimization is slow, expertise-dependent, and iterative. Here we present a closed-loop framework that automates this expert workflow by placing human tacit knowledge in the loop through a large language model (LLM) that distills synthesis knowledge from the literature, high-throughput hyperspectral imaging for rapid film evaluation, and multi-objective Bayesian optimization guided by experimental feedback. In a paired optimization campaign, LLM-assisted initialization produced more Pareto-optimal samples and higher hypervolume than a Latin hypercube sampling baseline at matched trial counts, and this advantage persisted throughout iterative optimization. We demonstrate the framework by synthesizing the previously unreported perovskite-inspired compound Rb3BiI6 as thin films and validating the optimized films by optical bandgap analysis and X-ray diffraction. The framework transforms synthesis prediction from single-shot recommendation to iterative learning, providing a generalizable strategy to accelerate automated and fully autonomous experimental materials discovery.

cond-mat.mtrl-sci↗

arXiv2026

ProDCARL: Reinforcement Learning-Aligned Diffusion Models for De Novo Antimicrobial Peptide Design

Antimicrobial resistance threatens healthcare sustainability and motivates low-cost computational discovery of antimicrobial peptides (AMPs). De novo peptide generation must optimize antimicrobial activity and safety through low predicted toxicity, but likelihood-trained generators do not enforce these goals explicitly. We introduce ProDCARL, a reinforcement-learning alignment framework that couples a diffusion-based protein generator (EvoDiff OA-DM 38M) with sequence property predictors for AMP activity and peptide toxicity. We fine-tune the diffusion prior on AMP sequences to obtain a domain-aware generator. Top-k policy-gradient updates use classifier-derived rewards plus entropy regularization and early stopping to preserve diversity and reduce reward hacking. In silico experiments show ProDCARL increases the mean predicted AMP score from 0.081 after fine-tuning to 0.178. The joint high-quality hit rate reaches 6.3\% with pAMP $>$0.7 and pTox $<$0.3. ProDCARL maintains high diversity, with $1-$mean pairwise identity equal to 0.929. Qualitative analyses with AlphaFold3 and ProtBERT embeddings suggest candidates show plausible AMP-like structural and semantic characteristics. ProDCARL serves as a candidate generator that narrows experimental search space, and experimental validation remains future work.

q-bio.QM↗

arXiv2025

A closed-loop AI framework for hypothesis-driven and interpretable materials design

Scientific hypothesis generation is central to materials discovery, yet current approaches often emphasize either conceptual (idea-to-data) reasoning or data-driven (data-to-idea) analysis, rarely achieving an effective integration of both. Here, we present a generalizable active learning workflow that integrates top-down, theory-driven hypothesis generation, guided by a large language model. This is complemented by bottom-up, data-driven hypothesis testing through a root-cause association study. We demonstrate this approach through the design of equimolar quinary-cation two-dimensional perovskite, a chemically complex system with over 850,000 possible cation combinations. In the top-down component, the large language model drives closed-loop optimization by proposing candidates that are likely to achieve phase purity, leveraging domain knowledge and chain-of-thought reasoning. With each iteration, the model identifies an increasing number of near phase-pure compositions, sampling less than 0.004% of the design space. In parallel, the bottom-up association study identifies molecular features with statistically significant influences on phase purity. The integration of these approaches enables the convergence of conceptual and statistical hypotheses, leading to generalizable and rational design rules for phase-pure quinary-cation two-dimensional perovskites. As a proof of concept, we applied the optimized phase-pure quinary-cation two-dimensional perovskite film as a surface capping layer in perovskite solar cells, achieving good performance and stability. Our framework enables the development of interpretable and generalizable design rules that are applicable to a wide range of optimization processes within complex design spaces, providing a foundational strategy for rational, scalable, and efficient materials discovery.

cond-mat.mtrl-sci↗

arXiv2025

Multimodal transformers with elemental priors for phase classification of X-ray diffraction spectra

Classifying a crystalline solid's phase using X-ray diffraction (XRD) is a challenging endeavor, first because this is a poorly constrained problem as there are nearly limitless candidate phases to compare against a given experimental spectrum, and second because experimental signals are confounded by overlapping peaks, preferred orientations, and phase mixtures. To address this challenge, we develop Chem-XRD, a multimodal framework based on vision transformer (ViT) architecture with two defining features: (i) crystallographic data is constrained by elemental priors and (ii) phase is classified according to probabilities (not absolutes). Elemental information can be extracted from pre-synthesis precursors or post-synthesis elemental analysis. By combining structural and elemental modalities, Chem-XRD simultaneously predicts both the number and identity of phases of lead-halide perovskite materials and their decomposition products. Through integrated gradient calculations, we show that the model can adeptly adjust the contributions of structural and elemental modalities toward the final prediction of phase identification, achieving a level of interpretability beyond what self-attention mechanisms can achieve.

physics.app-ph↗

arXiv2024

A Self-Supervised Robotic System for Autonomous Contact-Based Spatial Mapping of Semiconductor Properties

Integrating robotically driven contact-based material characterization techniques into self-driving laboratories can enhance measurement quality, reliability, and throughput. While deep learning models support robust autonomy, current methods lack reliable pixel-precision positioning and require extensive labeled data. To overcome these challenges, we propose an approach for building self-supervised autonomy into contact-based robotic systems that teach the robot to follow domain expert measurement principles at high-throughputs. Firstly, we design a vision-based, self-supervised convolutional neural network (CNN) architecture that uses differentiable image priors to optimize domain-specific objectives, refining the pixel precision of predicted robot contact poses by 20.0% relative to existing approaches. Secondly, we design a reliable graph-based planner for generating distance-minimizing paths to accelerate the robot measurement throughput and decrease planning variance by 6x. We demonstrate the performance of this approach by autonomously driving a 4-degree-of-freedom robotic probe for 24 hours to characterize semiconductor photoconductivity at 3,025 uniquely predicted poses across a gradient of drop-casted perovskite film compositions, achieving throughputs over 125 measurements per hour. Spatially mapping photoconductivity onto each drop-casted film reveals compositional trends and regions of inhomogeneity, valuable for identifying manufacturing process defects. With this self-supervised CNN-driven robotic system, we enable high-precision and reliable automation of contact-based characterization techniques at high throughputs, thereby allowing the measurement of previously inaccessible yet important semiconductor properties for self-driving laboratories.

cs.RO↗

arXiv2023

Using Scalable Computer Vision to Automate High-throughput Semiconductor Characterization

High-throughput materials synthesis methods have risen in popularity due to their potential to accelerate the design and discovery of novel functional materials, such as solution-processed semiconductors. After synthesis, key material properties must be measured and characterized to validate discovery and provide feedback to optimization cycles. However, with the boom in development of high-throughput synthesis tools that champion production rates up to $10^4$ samples per hour with flexible form factors, most sample characterization methods are either slow (conventional rates of $10^1$ samples per hour, approximately 1000x slower) or rigid (e.g., designed for standard-size microplates), resulting in a bottleneck that impedes the materials-design process. To overcome this challenge, we propose a set of automated material property characterization (autocharacterization) tools that leverage the adaptive, parallelizable, and scalable nature of computer vision to accelerate the throughput of characterization by 85x compared to the non-automated workflow. We demonstrate a generalizable composition mapping tool for high-throughput synthesized binary material systems as well as two scalable autocharacterization algorithms that (1) autonomously compute the band gap of 200 unique compositions in 6 minutes and (2) autonomously compute the degree of degradation in 200 unique compositions in 20 minutes, generating ultra-high compositional resolution trends of band gap and stability. We demonstrate that the developed band gap and degradation detection autocharacterization methods achieve 98.5% accuracy and 96.9% accuracy, respectively, on the FA$_{1-x}$MA$_{x}$PbI$_3$, $0\leq x \leq 1$ perovskite semiconductor system.

eess.IV↗