arXiv subjects

Federico Errica

Publications and source records attributed to Federico Errica.

At least 19 recordsLinked to original sources

arXiv2026

Variational Kolmogorov-Arnold Network

Kolmogorov-Arnold Networks (KANs) offer a theoretically grounded alternative to multi-layer perceptrons by representing multivariate functions as compositions of univariate basis functions. However, a critical limitation of KANs is the need to manually specify the number of basis functions per layer -- a hyperparameter that directly controls model capacity and substantially impacts performance, yet whose optimal value varies unpredictably across tasks. We present InfinityKAN, a variational inference framework that eliminates this design choice by learning the number of basis functions during training. Our approach models the basis count as a latent variable with a truncated exponential prior, introducing a differentiable weighting function that enables gradient-based optimization. We establish the Lipschitz continuity of the variational objective, ensuring stable training dynamics. Experiments across 18 datasets spanning synthetic, image, tabular, and graph domains demonstrate that InfinityKAN matches or exceeds the performance of KANs while requiring no manual selection of the number of bases for each layer.

cs.LG↗

arXiv2026

Adversarial Graph Neural Network Benchmarks: Towards Practical and Fair Evaluation

Adversarial learning and the robustness of Graph Neural Networks (GNNs) are topics of widespread interest in the machine learning community, as documented by the number of adversarial attacks and defenses designed for these purposes. While a rigorous evaluation of these adversarial methods is necessary to understand the robustness of GNNs in real-world applications, we posit that many works in the literature do not share the same experimental settings, leading to ambiguous and potentially contradictory scientific conclusions. In this benchmark, we demonstrate the importance of adopting fair, robust, and standardized evaluation protocols in adversarial GNN research. We perform a comprehensive re-evaluation of seven widely used attacks and eight recent defenses under both poisoning and evasion scenarios, across six popular graph datasets. Our study spans over 453,000 experiments conducted within a unified framework. We observe substantial differences in adversarial attack performance when evaluated under a fair and robust procedure. Our findings reveal that previously overlooked factors, such as target node selection and the training process of the attacked model, have a profound impact on attack effectiveness, to the extent of completely distorting performance insights. These results underscore the urgent need for standardized evaluations in adversarial graph machine learning.

cs.LG↗

arXiv2026

Not All Layers Are Created Equal: Adaptive LoRA Ranks for Personalized Image Generation

Low Rank Adaptation (LoRA) is the de facto fine-tuning strategy to generate personalized images from pre-trained diffusion models. Choosing a good rank is extremely critical, since it trades off performance and memory consumption, but today the decision is often left to the community's consensus, regardless of the personalized subject's complexity. The reason is evident: the cost of selecting a good rank for each LoRA component is combinatorial, so we opt for practical shortcuts such as fixing the same rank for all components. In this paper, we take a first step to overcome this challenge. Inspired by variational methods that learn an adaptive width of neural networks, we let the ranks of each layer freely adapt during fine-tuning on a subject. We achieve it by imposing an ordering of importance on the rank's positions, effectively encouraging the creation of higher ranks when strictly needed. Qualitatively and quantitatively, our approach, LoRA$^2$, achieves a competitive trade-off between DINO, CLIP-I, and CLIP-T across 29 subjects while requiring much less memory and lower rank than high rank LoRA versions. Code: https://github.com/donaldssh/NotAllLayersAreCreatedEqual.

cs.CV↗

arXiv2026

Oversmoothing, Oversquashing, Heterophily, Long-Range, and more: Demystifying Common Beliefs in Graph Machine Learning

After a renaissance phase in which researchers revisited the message-passing paradigm through the lens of deep learning, the graph machine learning community shifted its attention towards a deeper and practical understanding of message-passing's benefits and limitations. In this paper, we notice how the fast pace of progress around the topics of oversmoothing and oversquashing, the homophily-heterophily dichotomy, and long-range tasks, came with the consolidation of commonly accepted beliefs and assumptions -- under the form of universal statements -- that are not always true nor easy to distinguish from each other. We argue that this has led to ambiguities around the investigated problems, preventing researchers from focusing on and addressing precise research questions while causing a good amount of misunderstandings. Our contribution is to make such common beliefs explicit and encourage critical thinking around these topics, refuting universal statements via simple yet formally sufficient counterexamples. The end goal is to clarify conceptual differences, helping researchers address more clearly defined and targeted problems.

cs.LG↗

arXiv2026

Adaptive Width Neural Networks

For almost 70 years, researchers have typically selected the width of neural networks' layers either manually or through automated hyperparameter tuning methods such as grid search and, more recently, neural architecture search. This paper challenges the status quo by introducing an easy-to-use technique to learn an unbounded width of a neural network's layer during training. The method jointly optimizes the width and the parameters of each layer via standard backpropagation. We apply the technique to a broad range of data domains such as tables, images, text, sequences, and graphs, showing how the width adapts to the task's difficulty. A by product of our width learning approach is the easy truncation of the trained network at virtually zero cost, achieving a smooth trade-off between performance and compute resources. Alternatively, one can dynamically compress the network until performances do not degrade. In light of recent foundation models trained on large datasets, requiring billions of parameters and where hyper-parameter tuning is unfeasible due to huge training costs, our approach introduces a viable alternative for width learning.

cs.LG↗

arXiv2025

Fast, Modular, and Differentiable Framework for Machine Learning-Enhanced Molecular Simulations

We present an end-to-end differentiable molecular simulation framework (DIMOS) for molecular dynamics and Monte Carlo simulations. DIMOS easily integrates machine-learning-based interatomic potentials and implements classical force fields including an efficient implementation of particle-mesh Ewald. Thanks to its modularity, both classical and machine-learning-based approaches can be easily combined into a hybrid description of the system (ML/MM). By supporting key molecular dynamics features such as efficient neighborlists and constraint algorithms for larger time steps, the framework makes steps in bridging the gap between hand-optimized simulation engines and the flexibility of a \verb|PyTorch| implementation. We show that due to improved linear instead of quadratic scaling as function of system size DIMOS is able to obtain speed-up factors of up to $170\times$ for classical force field simulations against another fully differentiable simulation framework. The advantage of differentiability is demonstrated by an end-to-end optimization of the proposal distribution in a Markov Chain Monte Carlo simulation based on Hamiltonian Monte Carlo (HMC). Using these optimized simulation parameters a $3\times$ acceleration is observed in comparison to ad-hoc chosen simulation parameters. The code is available at https://github.com/nec-research/DIMOS.

physics.comp-ph↗

arXiv2025

Learn to Jump: Adaptive Random Walks for Long-Range Propagation through Graph Hierarchies

Message-passing architectures struggle to sufficiently model long-range dependencies in node and graph prediction tasks. We propose a novel approach exploiting hierarchical graph structures and adaptive random walks to address this challenge. Our method introduces learnable transition probabilities that decide whether the walk should prefer the original graph or travel across hierarchical shortcuts. On a synthetic long-range task, we demonstrate that our approach can exceed the theoretical bound that constrains traditional approaches operating solely on the original topology. Specifically, walks that prefer the hierarchy achieve the same performance as longer walks on the original graph. These preliminary findings open a promising direction for efficiently processing large graphs while effectively capturing long-range dependencies.

cs.LG↗

arXiv2025

What Did I Do Wrong? Quantifying LLMs' Sensitivity and Consistency to Prompt Engineering

Large Language Models (LLMs) changed the way we design and interact with software systems. Their ability to process and extract information from text has drastically improved productivity in a number of routine tasks. Developers that want to include these models in their software stack, however, face a dreadful challenge: debugging LLMs' inconsistent behavior across minor variations of the prompt. We therefore introduce two metrics for classification tasks, namely sensitivity and consistency, which are complementary to task performance. First, sensitivity measures changes of predictions across rephrasings of the prompt, and does not require access to ground truth labels. Instead, consistency measures how predictions vary across rephrasings for elements of the same class. We perform an empirical comparison of these metrics on text classification tasks, using them as guideline for understanding failure modes of the LLM. Our hope is that sensitivity and consistency will be helpful to guide prompt engineering and obtain LLMs that balance robustness with performance.

cs.LG↗

arXiv2025

Adaptive Message Passing: A General Framework to Mitigate Oversmoothing, Oversquashing, and Underreaching

Long-range interactions are essential for the correct description of complex systems in many scientific fields. The price to pay for including them in the calculations, however, is a dramatic increase in the overall computational costs. Recently, deep graph networks have been employed as efficient, data-driven models for predicting properties of complex systems represented as graphs. These models rely on a message passing strategy that should, in principle, capture long-range information without explicitly modeling the corresponding interactions. In practice, most deep graph networks cannot really model long-range dependencies due to the intrinsic limitations of (synchronous) message passing, namely oversmoothing, oversquashing, and underreaching. This work proposes a general framework that learns to mitigate these limitations: within a variational inference framework, we endow message passing architectures with the ability to adapt their depth and filter messages along the way. With theoretical and empirical arguments, we show that this strategy better captures long-range interactions, by competing with the state of the art on five node and graph prediction datasets.

cs.LG↗

arXiv2024

Higher-Rank Irreducible Cartesian Tensors for Equivariant Message Passing

The ability to perform fast and accurate atomistic simulations is crucial for advancing the chemical sciences. By learning from high-quality data, machine-learned interatomic potentials achieve accuracy on par with ab initio and first-principles methods at a fraction of their computational cost. The success of machine-learned interatomic potentials arises from integrating inductive biases such as equivariance to group actions on an atomic system, e.g., equivariance to rotations and reflections. In particular, the field has notably advanced with the emergence of equivariant message passing. Most of these models represent an atomic system using spherical tensors, tensor products of which require complicated numerical coefficients and can be computationally demanding. Cartesian tensors offer a promising alternative, though state-of-the-art methods lack flexibility in message-passing mechanisms, restricting their architectures and expressive power. This work explores higher-rank irreducible Cartesian tensors to address these limitations. We integrate irreducible Cartesian tensor products into message-passing neural networks and prove the equivariance and traceless property of the resulting layers. Through empirical evaluations on various benchmark data sets, we consistently observe on-par or better performance than that of state-of-the-art spherical and Cartesian models.

cs.LG↗

arXiv2024

Uncertainty-biased molecular dynamics for learning uniformly accurate interatomic potentials

Efficiently creating a concise but comprehensive data set for training machine-learned interatomic potentials (MLIPs) is an under-explored problem. Active learning, which uses biased or unbiased molecular dynamics (MD) to generate candidate pools, aims to address this objective. Existing biased and unbiased MD-simulation methods, however, are prone to miss either rare events or extrapolative regions -- areas of the configurational space where unreliable predictions are made. This work demonstrates that MD, when biased by the MLIP's energy uncertainty, simultaneously captures extrapolative regions and rare events, which is crucial for developing uniformly accurate MLIPs. Furthermore, exploiting automatic differentiation, we enhance bias-forces-driven MD with the concept of bias stress. We employ calibrated gradient-based uncertainties to yield MLIPs with similar or, sometimes, better accuracy than ensemble-based methods at a lower computational cost. Finally, we apply uncertainty-biased MD to alanine dipeptide and MIL-53(Al), generating MLIPs that represent both configurational spaces more accurately than models trained with conventional MD.

physics.comp-ph↗

arXiv2024

History repeats Itself: A Baseline for Temporal Knowledge Graph Forecasting

Temporal Knowledge Graph (TKG) Forecasting aims at predicting links in Knowledge Graphs for future timesteps based on a history of Knowledge Graphs. To this day, standardized evaluation protocols and rigorous comparison across TKG models are available, but the importance of simple baselines is often neglected in the evaluation, which prevents researchers from discerning actual and fictitious progress. We propose to close this gap by designing an intuitive baseline for TKG Forecasting based on predicting recurring facts. Compared to most TKG models, it requires little hyperparameter tuning and no iterative training. Further, it can help to identify failure modes in existing approaches. The empirical findings are quite unexpected: compared to 11 methods on five datasets, our baseline ranks first or third in three of them, painting a radically different picture of the predictive quality of the state of the art.

cs.LG↗

arXiv2024

Tractable Probabilistic Graph Representation Learning with Graph-Induced Sum-Product Networks

We introduce Graph-Induced Sum-Product Networks (GSPNs), a new probabilistic framework for graph representation learning that can tractably answer probabilistic queries. Inspired by the computational trees induced by vertices in the context of message-passing neural networks, we build hierarchies of sum-product networks (SPNs) where the parameters of a parent SPN are learnable transformations of the a-posterior mixing probabilities of its children's sum units. Due to weight sharing and the tree-shaped computation graphs of GSPNs, we obtain the efficiency and efficacy of deep graph networks with the additional advantages of a probabilistic model. We show the model's competitiveness on scarce supervision scenarios, under missing data, and for graph classification in comparison to popular neural models. We complement the experiments with qualitative analyses on hyper-parameters and the model's ability to answer probabilistic queries.

cs.LG↗

arXiv2023

Self-Tuning Hamiltonian Monte Carlo for Accelerated Sampling

The performance of Hamiltonian Monte Carlo simulations crucially depends on both the integration timestep and the number of integration steps. We present an adaptive general-purpose framework to automatically tune such parameters, based on a local loss function which promotes the fast exploration of phase-space. We show that a good correspondence between loss and autocorrelation time can be established, allowing for gradient-based optimization using a fully-differentiable set-up. The loss is constructed in such a way that it also allows for gradient-driven learning of a distribution over the number of integration steps. Our approach is demonstrated for the one-dimensional harmonic oscillator and alanine dipeptide, a small protein common as a test case for simulation methods. Through the application to the harmonic oscillator, we highlight the importance of not using a fixed timestep to avoid a rugged loss surface with many local minima, otherwise trapping the optimization. In the case of alanine dipeptide, by tuning the only free parameter of our loss definition, we find a good correspondence between it and the autocorrelation times, resulting in a $>100$ fold speed up in optimization of simulation parameters compared to a grid-search. For this system, we also extend the integrator to allow for atom-dependent timesteps, providing a further reduction of $25\%$ in autocorrelation times.

physics.comp-ph↗

arXiv2023

Investigating the Interplay between Features and Structures in Graph Learning

In the past, the dichotomy between homophily and heterophily has inspired research contributions toward a better understanding of Deep Graph Networks' inductive bias. In particular, it was believed that homophily strongly correlates with better node classification predictions of message-passing methods. More recently, however, researchers pointed out that such dichotomy is too simplistic as we can construct node classification tasks where graphs are completely heterophilic but the performances remain high. Most of these works have also proposed new quantitative metrics to understand when a graph structure is useful, which implicitly or explicitly assume the correlation between node features and target labels. Our work empirically investigates what happens when this strong assumption does not hold, by formalising two generative processes for node classification tasks that allow us to build and study ad-hoc problems. To quantitatively measure the influence of the node features on the target labels, we also use a metric we call Feature Informativeness. We construct six synthetic tasks and evaluate the performance of six models, including structure-agnostic ones. Our findings reveal that previously defined metrics are not adequate when we relax the above assumption. Our contribution to the workshop aims at presenting novel research findings that could help advance our understanding of the field.

cs.LG↗

arXiv2023

Modeling Edge Features with Deep Bayesian Graph Networks

We propose an extension of the Contextual Graph Markov Model, a deep and probabilistic machine learning model for graphs, to model the distribution of edge features. Our approach is architectural, as we introduce an additional Bayesian network mapping edge features into discrete states to be used by the original model. In doing so, we are also able to build richer graph representations even in the absence of edge features, which is confirmed by the performance improvements on standard graph classification benchmarks. Moreover, we successfully test our proposal in a graph regression scenario where edge features are of fundamental importance, and we show that the learned edge representation provides substantial performance improvements against the original model on three link prediction tasks. By keeping the computational complexity linear in the number of edges, the proposed model is amenable to large-scale graph processing.

cs.LG↗

arXiv2022

Bayesian Deep Learning for Graphs

The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an increasing interest in the adaptive processing of graphs, which led to the development of different neural network-based methodologies. In this thesis, we take a different route and develop a Bayesian Deep Learning framework for graph learning. The dissertation begins with a review of the principles over which most of the methods in the field are built, followed by a study on graph classification reproducibility issues. We then proceed to bridge the basic ideas of deep learning for graphs with the Bayesian world, by building our deep architectures in an incremental fashion. This framework allows us to consider graphs with discrete and continuous edge features, producing unsupervised embeddings rich enough to reach the state of the art on several classification tasks. Our approach is also amenable to a Bayesian nonparametric extension that automatizes the choice of almost all model's hyper-parameters. Two real-world applications demonstrate the efficacy of deep learning for graphs. The first concerns the prediction of information-theoretic quantities for molecular simulations with supervised neural models. After that, we exploit our Bayesian models to solve a malware-classification task while being robust to intra-procedural code obfuscation techniques. We conclude the dissertation with an attempt to blend the best of the neural and Bayesian worlds together. The resulting hybrid model is able to predict multimodal distributions conditioned on input graphs, with the consequent ability to model stochasticity and uncertainty better than most works. Overall, we aim to provide a Bayesian perspective into the articulated research field of deep learning for graphs.

cs.LG↗

arXiv2022

A Fair Comparison of Graph Neural Networks for Graph Classification

Experimental reproducibility and replicability are critical topics in machine learning. Authors have often raised concerns about their lack in scientific publications to improve the quality of the field. Recently, the graph representation learning field has attracted the attention of a wide research community, which resulted in a large stream of works. As such, several Graph Neural Network models have been developed to effectively tackle graph classification. However, experimental procedures often lack rigorousness and are hardly reproducible. Motivated by this, we provide an overview of common practices that should be avoided to fairly compare with the state of the art. To counter this troubling trend, we ran more than 47000 experiments in a controlled and uniform framework to re-evaluate five popular models across nine common benchmarks. Moreover, by comparing GNNs with structure-agnostic baselines we provide convincing evidence that, on some datasets, structural information has not been exploited yet. We believe that this work can contribute to the development of the graph learning field, by providing a much needed grounding for rigorous evaluations of graph classification models.

cs.LG↗