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Feng Fu

Publications and source records attributed to Feng Fu.

86 records · Page 5Linked to original sources

Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1

Massive research efforts are now underway to develop a cure for HIV infection, allowing patients to discontinue lifelong combination antiretroviral therapy (ART). New latency-reversing agents (LRAs) may be able to purge the persistent reservoir of latent virus in resting memory CD4+ T cells, but the degree of reservoir reduction needed for cure remains unknown. Here we use a stochastic model of infection dynamics to estimate the efficacy of LRA needed to prevent viral rebound after ART interruption. We incorporate clinical data to estimate population-level parameter distributions and outcomes. Our findings suggest that approximately 2,000-fold reductions are required to permit a majority of patients to interrupt ART for one year without rebound and that rebound may occur suddenly after multiple years. Greater than 10,000-fold reductions may be required to prevent rebound altogether. Our results predict large variation in rebound times following LRA therapy, which will complicate clinical management. This model provides benchmarks for moving LRAs from the lab to the clinic and can aid in the design and interpretation of clinical trials. These results also apply to other interventions to reduce the latent reservoir and can explain the observed return of viremia after months of apparent cure in recent bone marrow transplant recipients and an immediately-treated neonate.

q-bio.PE

Risk management of solitary and eusocial reproduction

Social insect colonies can be seen as a distinct form of biological organization because they function as superorganisms. Understanding how natural selection acts on the emergence and maintenance of these colonies remains a major question in evolutionary biology and ecology. Here, we explore this by using multi-type branching processes to calculate the basic reproductive ratios and the extinction probabilities for solitary versus eusocial reproductive strategies. In order to derive precise mathematical results, we use a simple haploid, asexual model. In general, we show that eusocial reproductive strategies are unlikely to materialize unless large fitness advantages are gained by the production of only a few workers. These fitness advantages are maximized through obligate rather than facultative eusocial strategies. Furthermore, we find that solitary reproduction is `unbeatable' as long as the solitary reproductive ratio exceeds a critical value. In these cases, no eusocial parameters exist that would reduce their probability of extinction. Our results help to explain why the number of solitary species exceeds that of eusocial ones: eusociality is a high risk, high reward strategy, while solitary reproduction is better at risk management.

q-bio.PE

Evolutionary Game Dynamics in Populations with Heterogeneous Structures

Evolutionary graph theory is a well established framework for modelling the evolution of social behaviours in structured populations. An emerging consensus in this field is that graphs that exhibit heterogeneity in the number of connections between individuals are more conducive to the spread of cooperative behaviours. In this article we show that such a conclusion largely depends on the individual-level interactions that take place. In particular, averaging payoffs garnered through game interactions rather than accumulating the payoffs can altogether remove the cooperative advantage of heterogeneous graphs while such a difference does not affect the outcome on homogeneous structures. In addition, the rate at which game interactions occur can alter the evolutionary outcome. Less interactions allow heterogeneous graphs to support more cooperation than homogeneous graphs, while higher rates of interactions make homogeneous and heterogeneous graphs virtually indistinguishable in their ability to support cooperation. Most importantly, we show that common measures of evolutionary advantage used in homogeneous populations, such as a comparison of the fixation probability of a rare mutant to that of the resident type, are no longer valid in heterogeneous populations. Heterogeneity causes a bias in where mutations occur in the population which affects the mutant's fixation probability. We derive the appropriate measures for heterogeneous populations that account for this bias.

q-bio.PE

Partner selections in public goods games with constant group size

Most of previous studies concerning the Public Goods Game assume either participation is unconditional or the number of actual participants in a competitive group changes over time. How the fixed group size, prescribed by social institutions, affects the evolution of cooperation is still unclear. We propose a model where individuals with heterogeneous social ties might well engage in differing numbers of Public Goods Games, yet with each Public Goods Game being constant size during the course of evolution. To do this, we assume that each focal individual unidirectionally selects a constant number of interaction partners from his immediate neighbors with probabilities proportional to the degrees or the reputations of these neighbors, corresponding to degree-based partner selection or reputation-based partner selection, respectively. Because of the stochasticity the group formation is dynamical. In both selection regimes, monotonical dependence of the stationary density of cooperators on the group size was found, the former over the whole range but the latter over a restricted range of the renormalized enhancement factor. Moreover, the reputation-based regime can substantially improve cooperation. To interpret these differences, the microscopic characteristics of individuals are probed. We later extend the degree-based partner selection to general cases where focal individuals have preferences towards their neighbors of varying social ties to form groups. As a comparison, we as well investigate the situation where individuals locating on the degree regular graphs choose their co-players at random. Our results may give some insights into better understanding the widespread teamwork and cooperation in the real world.

physics.soc-ph

Evolutionary game dynamics with three strategies in finite populations

We propose a model for evolutionary game dynamics with three strategies $A$, $B$ and $C$ in the framework of Moran process in finite populations. The model can be described as a stochastic process which can be numerically computed from a system of linear equations. Furthermore, to capture the feature of the evolutionary process, we define two essential variables, the {\em global} and the {\em local} fixation probability. If the {\em global} fixation probability of strategy $A$ exceeds the neutral fixation probability, the selection favors $A$ replacing $B$ or $C$ no matter what the initial ratio of $B$ to $C$ is. Similarly, if the {\em local} fixation probability of $A$ exceeds the neutral one, the selection favors $A$ replacing $B$ or $C$ only in some appropriate initial ratios of $B$ to $C$. Besides, using our model, the famous game with AllC, AllD and TFT is analyzed. Meanwhile, we find that a single individual TFT could invade the entire population under proper conditions.

physics.soc-ph

Information propagation and collective consensus in blogosphere: a game-theoretical approach

In this paper, we study the information propagation in an empirical blogging network by game-theoretical approach. The blogging network has small-world property and is scale-free. Individuals in the blogosphere coordinate their decisions according to their idiosyncratic preferences and the choices of their neighbors. We find that corresponding to different initial conditions and weights, the equilibrium frequency of discussions has a transition from high to low as a result of the common interest in the topics specified by payoff matrices. Furthermore, under recommendation, namely, individuals in blogging networks refer to additional bloggers' resources besides their nearest neighbors preferentially according to the popularity of the blogs, the whole blogging network ultrafastly evolves into consensus state (absorbing state). Our results reflect the dynamic pattern of information propagation in blogging networks.

physics.soc-ph

Evolutionary game dynamics in inhomogeneous populations

To our knowledge, the populations are generally assumed to be homogeneous in the traditional approach to evolutionary game dynamics. Here, we focus on the inhomogeneous populations. A simple model which can describe the inhomogeneity of the populations and a microscopic process which is similar to Moran Process are presented. By studying the replicator dynamics, it is shown that this model also keeps the fixed points unchanged and can affect the speed of converging to the equilibrium state. The fixation probability and the fixation time of this model are computed and discussed. In the inhomogeneous populations, there are different situations that characterize the time scale of evolution; and in each situation, there exists an optimum solution for the time to the equilibrium points, respectively. Moreover, these results on the speed of evolution are valid for infinite and finite populations.

physics.soc-ph

Prisoner's Dilemma on community networks

We introduce a community network model which exhibits scale-free property and study the evolutionary Prisoner's Dilemma game (PDG) on this network model. It is found that the frequency of cooperators decreases with the increment of the average degree $\bar{k}$ from the simulation results. And reducing inter-community links can promote cooperation when we keep the total links (including inner-community and inter-community links) unchanged. It is also shown that the heterogeneity of networks does not always enhance cooperation and the pattern of links among all the vertices under a given degree-distribution plays a crucial role in the dominance of cooperation in the network model.

physics.soc-ph

Promotion of cooperation induced by the interplay between structure and game dynamics

We consider the coupled dynamics of the adaption of network structure and the evolution of strategies played by individuals occupying the network vertices. We propose a computational model in which each agent plays a $n$-round Prisoner's Dilemma game with its immediate neighbors, after that, based upon self-interest, partial individuals may punish their defective neighbors by dismissing the social tie to the one who defects the most times, meanwhile seek for a new partner at random from the neighbors of the punished agent. It is found that the promotion of cooperation is attributed to the entangled evolution of individual strategy and network structure. Moreover, we show that the emerging social networks exhibit high heterogeneity and disassortative mixing pattern. For a given average connectivity of the population and the number of rounds, there is a critical value for the fraction of individuals adapting their social interactions, above which cooperators wipe out defectors. Besides, the effects of the average degree, the number of rounds, and the intensity of selection are investigated by extensive numerical simulations. Our results to some extent reflect the underlying mechanism promoting cooperation.

physics.soc-ph

Social dilemmas in an online social network: the structure and evolution of cooperation

We investigate two paradigms for studying the evolution of cooperation--Prisoner's Dilemma and Snowdrift game in an online friendship network obtained from a social networking site. We demonstrate that such social network has small-world property and degree distribution has a power-law tail. Besides, it has hierarchical organizations and exhibits disassortative mixing pattern. We study the evolutionary version of the two types of games on it. It is found that enhancement and sustainment of cooperative behaviors are attributable to the underlying network topological organization. It is also shown that cooperators can survive when confronted with the invasion of defectors throughout the entire ranges of parameters of both games. The evolution of cooperation on empirical networks is influenced by various network effects in a combined manner, compared with that on model networks. Our results can help understand the cooperative behaviors in human groups and society.

physics.soc-ph

Influence of initial distributions on robust cooperation in evolutionary Prisoner's Dilemma

We study the evolutionary Prisoner's Dilemma game on scale-free networks for different initial distributions. We consider three types of initial distributions for cooperators and defectors: initially random distribution with different frequencies of defectors; intentional organization with defectors initially occupying the most connected nodes with different fractions of defectors; intentional assignment for cooperators occupying the most connected nodes with different proportions of defectors at the beginning. It is shown that initial configurations for cooperators and defectors can influence the stationary level of cooperation and the evolution speed of cooperation. Organizations with the vertices with highest connectivity representing individuals cooperators could exhibit the most robust cooperation and drive evolutionary process to converge fastest to the high steady cooperation in the three situations of initial distributions. Otherwise, we determine the critical initial frequencies of defectors above which the extinction of cooperators occurs for the respective initial distributions, and find that the presence of network loops and clusters for cooperators can favor the emergence of cooperation.

physics.soc-ph

Evolutionary Prisoner's Dilemma on heterogeneous Newman-Watts small-world network

We focus on the heterogeneity of social networks and its role to the emergence of prevailing cooperation and sustaining cooperators. The social networks are representative of the interaction relationships between players and their encounters in each round of games. We study an evolutionary Prisoner's Dilemma game on a variant of Watts-Strogatz small-world network, whose heterogeneity can be tuned by a parameter. It is found that optimal cooperation level exists at some intermediate topological heterogeneity for different temptations to defect. Moreover, neither the most heterogeneous case nor the most homogeneous one would favor the cooperators. At intermediate heterogeneity in degree sequences, cooperators could resist the invasion of defectors for large temptation to defect.

math.DS

The structure of self-organized blogosphere

In this paper, a statistical analysis of the structure of one blog community, a kind of social networks, is presented. The quantities such as degree distribution, clustering coefficient, average shortest path length are calculated to capture the features of the blogging network. We demonstrate that the blogging network has small-world property and the in and out degree distributions have power-law forms. The analysis also confirms that blogging networks show in general disassortative mixing pattern. Furthermore, the popularity of the blogs is investigated to have a Zipf's law, namely, the fraction of the number of page views of blogs follows a power law.

math.ST

Information propagation in a novel hierarchical network

A novel hierarchical model of complex network is proposed, and information propagation process taking place on top of the network is investigated. Our model is demonstrated to have small world property. We found that the frequency distribution of refractory elements number is bimodal and the location of initially chosen seed infection affects the spreading range of the information.

math.DS