arXiv subjects

Feng Gao

Publications and source records attributed to Feng Gao.

At least 199 records · Page 11Linked to original sources

arXiv2023

Machine-Learning-based Colorectal Tissue Classification via Acoustic Resolution Photoacoustic Microscopy

Colorectal cancer is a deadly disease that has become increasingly prevalent in recent years. Early detection is crucial for saving lives, but traditional diagnostic methods such as colonoscopy and biopsy have limitations. Colonoscopy cannot provide detailed information within the tissues affected by cancer, while biopsy involves tissue removal, which can be painful and invasive. In order to improve diagnostic efficiency and reduce patient suffering, we studied machine-learningbased approach for colorectal tissue classification that uses acoustic resolution photoacoustic microscopy (ARPAM). With this tool, we were able to classify benign and malignant tissue using multiple machine learning methods. Our results were analyzed both quantitatively and qualitatively to evaluate the effectiveness of our approach.

stat.ML↗

arXiv2023

Regulating the Hydrophobic Domain in Peptide-Catecholamine Coassembled Nanostructures for Fluorescence Enhancement

Hydrophobic domains provide specific microenvironment for essential functional activities in life. Herein, we studied how the coassembling of peptides with catecholamines regulate the hydrophobic domain-containing nanostructures for fluorescence enhancement. By peptide encoding and coassembling with catecholamines of different hydrophilicities, a series of hierarchical assembling systems were constructed. In combination with molecular dynamics simulation, we experimentally discovered the hydrophobic domain of chromophore microenvironment regulates the fluorescence of coassembled nanostructures. Our results shed light on the rational design of fluorescent bio-coassembled nanoprobes for biomedical applications.

q-bio.BM↗

arXiv2023

Understanding Graph Neural Networks with Generalized Geometric Scattering Transforms

The scattering transform is a multilayered wavelet-based deep learning architecture that acts as a model of convolutional neural networks. Recently, several works have introduced generalizations of the scattering transform for non-Euclidean settings such as graphs. Our work builds upon these constructions by introducing windowed and non-windowed geometric scattering transforms for graphs based upon a very general class of asymmetric wavelets. We show that these asymmetric graph scattering transforms have many of the same theoretical guarantees as their symmetric counterparts. As a result, the proposed construction unifies and extends known theoretical results for many of the existing graph scattering architectures. In doing so, this work helps bridge the gap between geometric scattering and other graph neural networks by introducing a large family of networks with provable stability and invariance guarantees. These results lay the groundwork for future deep learning architectures for graph-structured data that have learned filters and also provably have desirable theoretical properties.

stat.ML↗

arXiv2023

Masked Path Modeling for Vision-and-Language Navigation

Vision-and-language navigation (VLN) agents are trained to navigate in real-world environments by following natural language instructions. A major challenge in VLN is the limited availability of training data, which hinders the models' ability to generalize effectively. Previous approaches have attempted to address this issue by introducing additional supervision during training, often requiring costly human-annotated data that restricts scalability. In this paper, we introduce a masked path modeling (MPM) objective, which pretrains an agent using self-collected data for downstream navigation tasks. Our proposed method involves allowing the agent to actively explore navigation environments without a specific goal and collect the paths it traverses. Subsequently, we train the agent on this collected data to reconstruct the original path given a randomly masked subpath. This way, the agent can actively accumulate a diverse and substantial amount of data while learning conditional action generation. To evaluate the effectiveness of our technique, we conduct experiments on various VLN datasets and demonstrate the versatility of MPM across different levels of instruction complexity. Our results exhibit significant improvements in success rates, with enhancements of 1.32\%, 1.05\%, and 1.19\% on the val-unseen split of the Room-to-Room, Room-for-Room, and Room-across-Room datasets, respectively. Furthermore, we conduct an analysis that highlights the potential for additional improvements when the agent is allowed to explore unseen environments prior to testing.

cs.CV↗

arXiv2023

Selecting Learnable Training Samples is All DETRs Need in Crowded Pedestrian Detection

DEtection TRansformer (DETR) and its variants (DETRs) achieved impressive performance in general object detection. However, in crowded pedestrian detection, the performance of DETRs is still unsatisfactory due to the inappropriate sample selection method which results in more false positives. To settle the issue, we propose a simple but effective sample selection method for DETRs, Sample Selection for Crowded Pedestrians (SSCP), which consists of the constraint-guided label assignment scheme (CGLA) and the utilizability-aware focal loss (UAFL). Our core idea is to select learnable samples for DETRs and adaptively regulate the loss weights of samples based on their utilizability. Specifically, in CGLA, we proposed a new cost function to ensure that only learnable positive training samples are retained and the rest are negative training samples. Further, considering the utilizability of samples, we designed UAFL to adaptively assign different loss weights to learnable positive samples depending on their gradient ratio and IoU. Experimental results show that the proposed SSCP effectively improves the baselines without introducing any overhead in inference. Especially, Iter Deformable DETR is improved to 39.7(-2.0)% MR on Crowdhuman and 31.8(-0.4)% MR on Citypersons.

cs.CV↗

arXiv2023

Demonstration of acoustic high-order Stiefel-Whitney semimetal in bilayer graphene sonic crystals

Recently, higher-order topological phases have endowed materials many exotic topological phases. For three-dimensional (3D) higher-order topologies, it hosts topologically protected 1D hinge states or 0D corner states, which extend the bulk-boundary correspondence of 3D topological phases. Meanwhile, the enrichment of group symmetries with exploration of projective symmetry algebras redefined the fundamentals of nontrivial topological matter with artificial gauge fields, leading to the discovery of new topological phases in classical wave systems. In this Letter, we construct an acoustic topological semimetal characterized by both the first and the second Stiefel-Whitney (SW) topological charges by utilizing the projective symmetry. Different from conventional high-order topologies with multiple bulk-boundary correspondences protected by different class topological invariants, acoustic high-order Stiefel-Whitney semimetal (HOSWS) has two different bulk-edge correspondences protected by only one class (SW class) topological invariant. Two types of topological hinge and surface states are embedded in bulk bands at the same frequency, featuring similar characteristics of bound states in the continuum (BICs). In experiments, we demonstrate the existence of high-quality surface state and hinge state at the interested frequency window with polarized intensity field distributions.

cond-mat.mes-hall↗

arXiv2023

Understanding the Role of Triplet-triplet Annihilation in Non-fullerene Acceptor Organic Solar Cells

Non-fullerene acceptors (NFAs) have enabled power conversion efficiencies exceeding 19% in organic solar cells (OSCs). However, the open-circuit voltage of OSCs remains low relative to their optical gap due to excessive non-radiative recombination, and this now limits performance. Here, we consider an important aspect of OSC design, namely management of the triplet exciton population formed after non-geminate charge recombination. By comparing the blends PM6:Y11 and PM6:Y6, we show that the greater crystallinity of the NFA domains in PM6:Y11 leads to a higher rate of triplet-triplet annihilation (TTA). We attribute this to the four times larger ground state dipole moment of Y11 versus Y6, which improves the long range NFA out-of-plane ordering. Since TTA converts a fraction of the non-emissive triplet states into bright singlet states, it has the potential to reduce non-radiative voltage losses. Through a kinetic analysis of the recombination processes under 1-Sun illumination, we provide a framework for determining the conditions under which TTA may improve OSC performance. If these could be satisfied, TTA has the potential to reduce non-radiative voltage losses by up to several tens of mV and could thus improve OSC performance.

physics.app-ph↗

arXiv2023

SAWU-Net: Spatial Attention Weighted Unmixing Network for Hyperspectral Images

Hyperspectral unmixing is a critical yet challenging task in hyperspectral image interpretation. Recently, great efforts have been made to solve the hyperspectral unmixing task via deep autoencoders. However, existing networks mainly focus on extracting spectral features from mixed pixels, and the employment of spatial feature prior knowledge is still insufficient. To this end, we put forward a spatial attention weighted unmixing network, dubbed as SAWU-Net, which learns a spatial attention network and a weighted unmixing network in an end-to-end manner for better spatial feature exploitation. In particular, we design a spatial attention module, which consists of a pixel attention block and a window attention block to efficiently model pixel-based spectral information and patch-based spatial information, respectively. While in the weighted unmixing framework, the central pixel abundance is dynamically weighted by the coarse-grained abundances of surrounding pixels. In addition, SAWU-Net generates dynamically adaptive spatial weights through the spatial attention mechanism, so as to dynamically integrate surrounding pixels more effectively. Experimental results on real and synthetic datasets demonstrate the better accuracy and superiority of SAWU-Net, which reflects the effectiveness of the proposed spatial attention mechanism.

eess.IV↗

arXiv2023

Multi-scale Adaptive Fusion Network for Hyperspectral Image Denoising

Removing the noise and improving the visual quality of hyperspectral images (HSIs) is challenging in academia and industry. Great efforts have been made to leverage local, global or spectral context information for HSI denoising. However, existing methods still have limitations in feature interaction exploitation among multiple scales and rich spectral structure preservation. In view of this, we propose a novel solution to investigate the HSI denoising using a Multi-scale Adaptive Fusion Network (MAFNet), which can learn the complex nonlinear mapping between clean and noisy HSI. Two key components contribute to improving the hyperspectral image denoising: A progressively multiscale information aggregation network and a co-attention fusion module. Specifically, we first generate a set of multiscale images and feed them into a coarse-fusion network to exploit the contextual texture correlation. Thereafter, a fine fusion network is followed to exchange the information across the parallel multiscale subnetworks. Furthermore, we design a co-attention fusion module to adaptively emphasize informative features from different scales, and thereby enhance the discriminative learning capability for denoising. Extensive experiments on synthetic and real HSI datasets demonstrate that the proposed MAFNet has achieved better denoising performance than other state-of-the-art techniques. Our codes are available at \verb'https://github.com/summitgao/MAFNet'.

eess.IV↗

arXiv2023

Physical Knowledge Enhanced Deep Neural Network for Sea Surface Temperature Prediction

Traditionally, numerical models have been deployed in oceanography studies to simulate ocean dynamics by representing physical equations. However, many factors pertaining to ocean dynamics seem to be ill-defined. We argue that transferring physical knowledge from observed data could further improve the accuracy of numerical models when predicting Sea Surface Temperature (SST). Recently, the advances in earth observation technologies have yielded a monumental growth of data. Consequently, it is imperative to explore ways in which to improve and supplement numerical models utilizing the ever-increasing amounts of historical observational data. To this end, we introduce a method for SST prediction that transfers physical knowledge from historical observations to numerical models. Specifically, we use a combination of an encoder and a generative adversarial network (GAN) to capture physical knowledge from the observed data. The numerical model data is then fed into the pre-trained model to generate physics-enhanced data, which can then be used for SST prediction. Experimental results demonstrate that the proposed method considerably enhances SST prediction performance when compared to several state-of-the-art baselines.

cs.LG↗

arXiv2023

Photoacoustic digital tooth and image reconstruction of tooth root

Imaging of teeth is very important to doctors in the diagnosis and treatment of dental diseases. The main imaging modality currently used is Cone-Beam Computed Tomography (CBCT), which however suffers from ionizing radiation causing potential damage to human body. In this work, photoacoustic imaging is proposed for the imaging of tooth, specifically the tooth root. A photoacoustic digital phantom of the tooth is generated based on clinical CBCT data. The roots encased by alveolar bone are imaged by using the realistic photoacoustic digital phantom in the simulation study. Several image reconstruction algorithms are used and compared to remove the artifacts caused by heterogeneous acoustic velocity distribution.

physics.med-ph↗

arXiv2023

Structure Embedded Nucleus Classification for Histopathology Images

Nuclei classification provides valuable information for histopathology image analysis. However, the large variations in the appearance of different nuclei types cause difficulties in identifying nuclei. Most neural network based methods are affected by the local receptive field of convolutions, and pay less attention to the spatial distribution of nuclei or the irregular contour shape of a nucleus. In this paper, we first propose a novel polygon-structure feature learning mechanism that transforms a nucleus contour into a sequence of points sampled in order, and employ a recurrent neural network that aggregates the sequential change in distance between key points to obtain learnable shape features. Next, we convert a histopathology image into a graph structure with nuclei as nodes, and build a graph neural network to embed the spatial distribution of nuclei into their representations. To capture the correlations between the categories of nuclei and their surrounding tissue patterns, we further introduce edge features that are defined as the background textures between adjacent nuclei. Lastly, we integrate both polygon and graph structure learning mechanisms into a whole framework that can extract intra and inter-nucleus structural characteristics for nuclei classification. Experimental results show that the proposed framework achieves significant improvements compared to the state-of-the-art methods.

cs.CV↗

arXiv2023

Differentiable Arbitrating in Zero-sum Markov Games

We initiate the study of how to perturb the reward in a zero-sum Markov game with two players to induce a desirable Nash equilibrium, namely arbitrating. Such a problem admits a bi-level optimization formulation. The lower level requires solving the Nash equilibrium under a given reward function, which makes the overall problem challenging to optimize in an end-to-end way. We propose a backpropagation scheme that differentiates through the Nash equilibrium, which provides the gradient feedback for the upper level. In particular, our method only requires a black-box solver for the (regularized) Nash equilibrium (NE). We develop the convergence analysis for the proposed framework with proper black-box NE solvers and demonstrate the empirical successes in two multi-agent reinforcement learning (MARL) environments.

cs.MA↗

arXiv2023

Second harmonic and cascaded third harmonic generation in generalized quasi-periodic poled lithium niobate waveguides

Lithium niobate (LN) thin film has recently emerged as an important platform for nonlinear optical investigations for its large $χ^{(2)}$ nonlinear coefficients and ability of light localization. In this paper, we report the first fabrication of LN on insulator (LNOI) ridge waveguides with generalized quasi-periodic poled superlattices using the electric field polarization technique and microfabrication techniques. Benefiting from the abundant reciprocal vectors, we observed efficient second-harmonic and cascaded third-harmonic signals in the same device, with the normalized conversion efficiency 1735% W$^{-1}$cm$^{-2}$ and 0.41% W$^{-2}$cm$^{-4}$, respectively. This work opens a new direction of nonlinear integrated photonics based on LN thin film.

physics.optics↗

arXiv2023

The GRAVITY+ Project: Towards All-sky, Faint-Science, High-Contrast Near-Infrared Interferometry at the VLTI

The GRAVITY instrument has been revolutionary for near-infrared interferometry by pushing sensitivity and precision to previously unknown limits. With the upgrade of GRAVITY and the Very Large Telescope Interferometer (VLTI) in GRAVITY+, these limits will be pushed even further, with vastly improved sky coverage, as well as faint-science and high-contrast capabilities. This upgrade includes the implementation of wide-field off-axis fringe-tracking, new adaptive optics systems on all Unit Telescopes, and laser guide stars in an upgraded facility. GRAVITY+ will open up the sky to the measurement of black hole masses across cosmic time in hundreds of active galactic nuclei, use the faint stars in the Galactic centre to probe General Relativity, and enable the characterisation of dozens of young exoplanets to study their formation, bearing the promise of another scientific revolution to come at the VLTI.

astro-ph.IM↗

arXiv2023

Artificial intelligence for diagnosing and predicting survival of patients with renal cell carcinoma: Retrospective multi-center study

Background: Clear cell renal cell carcinoma (ccRCC) is the most common renal-related tumor with high heterogeneity. There is still an urgent need for novel diagnostic and prognostic biomarkers for ccRCC. Methods: We proposed a weakly-supervised deep learning strategy using conventional histology of 1752 whole slide images from multiple centers. Our study was demonstrated through internal cross-validation and external validations for the deep learning-based models. Results: Automatic diagnosis for ccRCC through intelligent subtyping of renal cell carcinoma was proved in this study. Our graderisk achieved aera the curve (AUC) of 0.840 (95% confidence interval: 0.805-0.871) in the TCGA cohort, 0.840 (0.805-0.871) in the General cohort, and 0.840 (0.805-0.871) in the CPTAC cohort for the recognition of high-grade tumor. The OSrisk for the prediction of 5-year survival status achieved AUC of 0.784 (0.746-0.819) in the TCGA cohort, which was further verified in the independent General cohort and the CPTAC cohort, with AUC of 0.774 (0.723-0.820) and 0.702 (0.632-0.765), respectively. Cox regression analysis indicated that graderisk, OSrisk, tumor grade, and tumor stage were found to be independent prognostic factors, which were further incorporated into the competing-risk nomogram (CRN). Kaplan-Meier survival analyses further illustrated that our CRN could significantly distinguish patients with high survival risk, with hazard ratio of 5.664 (3.893-8.239, p < 0.0001) in the TCGA cohort, 35.740 (5.889-216.900, p < 0.0001) in the General cohort and 6.107 (1.815 to 20.540, p < 0.0001) in the CPTAC cohort. Comparison analyses conformed that our CRN outperformed current prognosis indicators in the prediction of survival status, with higher concordance index for clinical prognosis.

eess.IV↗

arXiv2023

Lesion-aware Dynamic Kernel for Polyp Segmentation

Automatic and accurate polyp segmentation plays an essential role in early colorectal cancer diagnosis. However, it has always been a challenging task due to 1) the diverse shape, size, brightness and other appearance characteristics of polyps, 2) the tiny contrast between concealed polyps and their surrounding regions. To address these problems, we propose a lesion-aware dynamic network (LDNet) for polyp segmentation, which is a traditional u-shape encoder-decoder structure incorporated with a dynamic kernel generation and updating scheme. Specifically, the designed segmentation head is conditioned on the global context features of the input image and iteratively updated by the extracted lesion features according to polyp segmentation predictions. This simple but effective scheme endows our model with powerful segmentation performance and generalization capability. Besides, we utilize the extracted lesion representation to enhance the feature contrast between the polyp and background regions by a tailored lesion-aware cross-attention module (LCA), and design an efficient self-attention module (ESA) to capture long-range context relations, further improving the segmentation accuracy. Extensive experiments on four public polyp benchmarks and our collected large-scale polyp dataset demonstrate the superior performance of our method compared with other state-of-the-art approaches. The source code is available at https://github.com/ReaFly/LDNet.

eess.IV↗

arXiv2023

Nearest Neighbor-Based Contrastive Learning for Hyperspectral and LiDAR Data Classification

The joint hyperspectral image (HSI) and LiDAR data classification aims to interpret ground objects at more detailed and precise level. Although deep learning methods have shown remarkable success in the multisource data classification task, self-supervised learning has rarely been explored. It is commonly nontrivial to build a robust self-supervised learning model for multisource data classification, due to the fact that the semantic similarities of neighborhood regions are not exploited in existing contrastive learning framework. Furthermore, the heterogeneous gap induced by the inconsistent distribution of multisource data impedes the classification performance. To overcome these disadvantages, we propose a Nearest Neighbor-based Contrastive Learning Network (NNCNet), which takes full advantage of large amounts of unlabeled data to learn discriminative feature representations. Specifically, we propose a nearest neighbor-based data augmentation scheme to use enhanced semantic relationships among nearby regions. The intermodal semantic alignments can be captured more accurately. In addition, we design a bilinear attention module to exploit the second-order and even high-order feature interactions between the HSI and LiDAR data. Extensive experiments on four public datasets demonstrate the superiority of our NNCNet over state-of-the-art methods. The source codes are available at \url{https://github.com/summitgao/NNCNet}.

eess.IV↗