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Fernando A. N. Santos

Publications and source records attributed to Fernando A. N. Santos.

14 recordsLinked to original sources

Hyperscaling of spatial fluctuations constrains the development of urban populations

Urban populations exhibit fractal organization and systematic scaling regularities, yet the scaling exponents reported across cities vary substantially, challenging existing theory. Using 100~m gridded population maps for 109 urban regions in the Netherlands (2000--2023) and 368 major world cities (1975--2020), we recursively coarse-grain each city and quantify how the mean and variance of inhabitants in square grid cells of side length $\ell$ scale with $\ell$. This yields two exponents, $β$ from $\langle N_\ell\rangle\sim \ell^β$ and $γ$ from $\mathrm{Var}(N_\ell)\sim \ell^γ$, where in the small-$\ell$ limit $β$ equals the planar fractal dimension of populated space. Across cities within a given year, $γ$ depends linearly on $β$. Compiling $>$10,000 exponent estimates over five decades shows that this hyperscaling relation is robust yet non-universal: its slope and intercept vary across continents and drift systematically in time, trending toward the limiting form $γ\simeq 2+β$. A mean-field (independent-cell) argument predicts a quadratic mean--variance mapping and cannot reproduce the observed $β$--$γ$ dependence, implying strong spatial correlations. We derive a correlation-aware variance decomposition in which $γ$ is controlled by a correlation dimension $D_c$; in the correlation-dominated regime $γ=2+D_c$. If large maturing cities, as are the ones selected in our dataset, evolve to effective monofractal ($D_c\simeq β$) cities, the asymptotic prediction becomes $γ\simeq 2+β$, consistent with the observed temporal drift. This interdependence links urban geometry and fluctuations, provides an empirical constraint for mechanistic models of urban growth, and implies scaling predictions for spatial indicators built from local means and variances.

physics.soc-ph↗

Efficient Decomposition of Forman-Ricci Curvature on Vietoris-Rips Complexes and Data Applications

Discrete Forman-Ricci curvature (FRC) is an efficient tool that characterizes essential geometrical features and associated transitions of real-world networks, extending seamlessly to higher-dimensional computations in simplicial complexes. In this article, we provide two major advancements: First, we give a decomposition for FRC that inhently allows a local computations of FRC. Second, we construct a set-theoretical proof enabling an efficient algorithms for the local computation of FRC in Vietoris-Rips (VR) complexes. Our findings open new avenues for geometric computations in VR complexes and highlight an essential yet under-explored aspect of data analysis and visualisation: the geometry underpinning statistical patterns.

math.GT↗

Multimodal Higher-Order Brain Networks: A Topological Signal Processing Perspective

Brain connectomics is still largely dominated by pairwise-based models, such as graphs, which cannot represent circulatory or higher-order functional interactions. In this paper, we propose a multimodal framework based on Topological Signal Processing (TSP) that models the brain as a higher-order topological domain and treats functional interactions as discrete vector fields. We integrate diffusion MRI and resting-state fMRI to learn subject-specific brain cell complexes, where statistically validated structural connectivity defines a sparse scaffold and phase-coupling functional edge signals drive the inference of higher-order interactions (HOIs). Using Hodge-theoretic tools, spectral filtering, and sparse signal representations, our framework disentangles brain connectivity into divergence (source-sink organization), gradient (potential-driven coordination), and curl (circulatory HOIs), enabling the characterization of temporal dynamics through the lens of discrete vector calculus. Across 100 healthy young adults from Human Connectome Project, node-based HOIs are highly individualized, yet robust mesoscale structure emerges under functional-system aggregation. We identify a distributed default mode network-centered gradient backbone and limbic-centered rotational flows; divergence polarization and curl profiles defining circulation regimes with insightful occupancy and dwell-time statistics. These topological signatures yield significant brain-behavior associations, revealing a relevant higher-order organization intrinsic to edge-based models. By making divergence, circulation, and recurrent mesoscale coordination directly measurable, this work enables a principled and interpretable topological phenotyping of brain function.

q-bio.NC↗

Neighbourhood topology unveils pathological hubs in the brain networks of epilepsy-surgery patients

Pathological hubs in the brain networks of epilepsy patients are hypothesized to drive seizure generation and propagation. In epilepsy-surgery patients, these hubs have traditionally been associated with the resection area (RA): the region removed during the surgery with the goal of stopping the seizures, and which is typically used as a proxy for the epileptogenic zone. However, recent studies hypothesize that pathological hubs may extend to the vicinity of the RA, potentially complicating post-surgical seizure control. Here we propose a neighbourhood-based analysis of brain organization to investigate this hypothesis. We exploit a large dataset of pre-surgical magnetoencephalography-derived whole-brain networks from 91 epilepsy-surgery patients. Our neighbourhood focus is 2-fold. Firstly, we propose a partition of the brain regions into three sets, namely resected nodes, their neighbours and the remaining network nodes. Secondly, we introduce generalized centrality metrics that describe the neighbourhood of each node, providing a regional measure of hubness. Our analyses reveal that both the RA and its neighbourhood present large hub status, but with significant variability across patients. For some, hubs appear in the RA; for others, in its neighbourhood. Moreover, this variability does not correlate with surgical outcome. These results highlight the potential of neighbourhood-based analyses to uncover novel insights into brain connectivity in brain pathologies, and the need for individualized studies, with large enough cohorts, that account for patient-specific variability.

physics.data-an↗

Topological Signal Processing Over Cell MultiComplexes Via Cross-Laplacian Operators

One of the key challenges in many research fields is uncovering how different interconnected systems interact within complex networks, typically represented as multi-layer networks. Capturing the intra- and cross-layer interactions among different domains for analysis and processing calls for topological algebraic descriptors capable of localizing the homologies of different domains, at different scales, according to the learning task. Our first contribution in this paper is to introduce the Cell MultiComplexes (CMCs), which are novel topological spaces that enable the representation of higher-order interactions among interconnected cell complexes. We introduce cross-Laplacian operators as powerful algebraic descriptors of CMC spaces able to capture different topological invariants, whether global or local, at different resolutions. Using the eigenvectors of these operators as bases for the signal representation, we develop topological signal processing tools for signals defined over CMCs. Then, we focus on the signal spectral representation and on the filtering of noisy flows observed over the cross-edges between different layers of CMCs. We show that a local signal representation based on cross-Laplacians yields a better sparsity/accuracy trade-off compared to monocomplex representations, which provide overcomplete representation of local signals. Finally, we illustrate a topology learning strategy designed to infer second-order cross-cells between layers, with applications to brain networks for encoding inter-module connectivity patterns.

eess.SP↗

Intermediate time scale in the first product formation time distribution of Michaelis-Menten kinetics with inhibitors

Michaelis-Menten kinetics is one of the most recognized models in enzyme kinetics, crucial for the understanding of biochemical reactions in several metabolic processes. In this study, we perform a stochastic analysis of the Michaelis-Menten kinetics with the introduction of inhibitory mechanisms, which significantly diversifies the study of the reaction. We apply the Fock space formalism to reformulate the master equation, transforming it into a Schrödinger-type equation. We investigate reversible inhibitions and analyze the behavior of the averaged number of substances involved, identifying a stiffness behavior in all scenarios. In a specific case of partial inhibition, we observe that the inhibitor can act as an activator that favors product formation. We calculate the first product formation time (FPFT), which characterizes the time statistic of the first product formation. We observe the emergence of an intermediate time scale in addition to the two known time scales typical in first-passage problems. This intermediate time scale is closely aligned with the slow-binding kinetics observed in experimentally observed enzymatic reactions that involve inhibitors. This intermediate time scale is related to the new pathways introduced by the presence of inhibitors. This study offers a new perspective on inhibited enzymatic reactions, and demonstrates the usefulness of the Fock space formalism in the analysis of complex chemical systems.

physics.bio-ph↗

Cross-Laplacians Based Topological Signal Processing over Cell MultiComplexes

The study of the interactions among different types of interconnected systems in complex networks has attracted significant interest across many research fields. However, effective signal processing over layered networks requires topological descriptors of the intra- and cross-layers relationships that are able to disentangle the homologies of different domains, at different scales, according to the specific learning task. In this paper, we present Cell MultiComplex (CMC) spaces, which are novel topological domains for representing multiple higher-order relationships among interconnected complexes. We introduce cross-Laplacians matrices, which are algebraic descriptors of CMCs enabling the extraction of topological invariants at different scales, whether global or local, inter-layer or intra-layer. Using the eigenvectors of these cross-Laplacians as signal bases, we develop topological signal processing tools for CMC spaces. In this first study, we focus on the representation and filtering of noisy flows observed over cross-edges between different layers of CMCs to identify cross-layer hubs, i.e., key nodes on one layer controlling the others.

eess.SP↗

Learning Higher-Order Interactions in Brain Networks via Topological Signal Processing

Our goal in this paper is to leverage the potential of the topological signal processing (TSP) framework for analyzing brain networks. Representing brain data as signals over simplicial complexes allows us to capture higher-order relationships within brain regions of interest (ROIs). Here, we focus on learning the underlying brain topology from observed neural signals using two distinct inference strategies. The first method relies on higher-order statistical metrics to infer multiway relationships among ROIs. The second method jointly learns the brain topology and sparse signal representations, of both the solenoidal and harmonic components of the signals, by minimizing the total variation along triangles and the data-fitting errors. Leveraging the properties of solenoidal and irrotational signals, and their physical interpretations, we extract functional connectivity features from brain topologies and uncover new insights into functional organization patterns. This allows us to associate brain functional connectivity (FC) patterns of conservative signals with well-known functional segregation and integration properties. Our findings align with recent neuroscience research, suggesting that our approach may offer a promising pathway for characterizing the higher-order brain functional connectivities.

eess.SP↗

Alternative set-theoretical algorithms for efficient computations of cliques in Vietoris-Rips complexes

Identifying cliques in dense networks remains a formidable challenge, even with significant advances in computational power and methodologies. To tackle this, numerous algorithms have been developed to optimize time and memory usage, implemented across diverse programming languages. Yet, the inherent NP-completeness of the problem continues to hinder performance on large-scale networks, often resulting in memory leaks and slow computations. In the present study, we critically evaluate classic algorithms to pinpoint computational bottlenecks and introduce novel set-theoretical approaches tailored for network clique computation. Our proposed algorithms are rigorously implemented and benchmarked against existing Python-based solutions, demonstrating superior performance. These findings underscore the potential of set-theoretical techniques to drive substantial performance gains in network analysis.

math.CO↗

Interdependent scaling exponents in the human brain

We apply the phenomenological renormalization group to resting-state fMRI time series of brain activity in a large population. By recursively coarse-graining the data, we compute scaling exponents for the series variance, log probability of silence, and largest covariance eigenvalue. The exponents clearly exhibit linear interdependencies, which we derive analytically in a mean-field approach. We find a significant correlation of exponent values with the gray matter volume and cognitive performance. Akin to scaling relations near critical points in thermodynamics, our findings suggest scaling interdependencies are intrinsic to brain organization and may also exist in other complex systems.

cond-mat.dis-nn↗

Beyond Signal and Noise: Unraveling Scale Invariance in Neuroscience and Financial Networks with Topological Data Analysis

Topological Data Analysis (TDA) is increasingly crucial in investigating the shape of complex data structures across scientific fields, particularly in neuroscience and finance. This study delves into persistent homology, a TDA component initially aimed at differentiating between signal and noise. We explore two methodologies: the conventional cycle length approach and the novel death-birth ratio method proposed by Bobrowski and Skraba. Analyzing rs-fMRI data from the Human Connectome Project and daily $S\&P 500$ financial networks, our study compares these methods in identifying significant cycles. A key discovery is a robust relationship between z-score thresholds applied to bar lengths or ratios and behavioural traits in brain networks and market volatility in financial networks. In the brain, this is evident in the strong correlation between significant 1-cycles, brain volumes, and sex-based differences. In financial markets, a fractal pattern emerges, where market volatility negatively correlates with the number of significant cycles, indicating that more complex market topologies are associated with increased stability. Our findings also imply a fractal nature of 1-cycles at both population levels and across multiple days in the stock market. The distribution of significant loops, marked by high z-scores, remains consistent across various z-score thresholds, revealing a scale-invariant, fractal structure in both data sets. Given the scale invariance in these fractal structures, the traditional TDA distinction between signal and noise becomes less meaningful. This suggests that all scales of cycle length are relevant, challenging the conventional approach of segregating signal from noise and broadening the scope of TDA to reveal intricate, scale-invariant relationships in complex systems.

physics.soc-ph↗

Efficient set-theoretic algorithms for computing high-order Forman-Ricci curvature on abstract simplicial complexes

Forman-Ricci curvature (FRC) is a potent and powerful tool for analysing empirical networks, as the distribution of the curvature values can identify structural information that is not readily detected by other geometrical methods. Crucially, FRC captures higher-order structural information of clique complexes of a graph or Vietoris-Rips complexes, which is not readily accessible to alternative methods. However, existing FRC platforms are prohibitively computationally expensive. Therefore, herein we develop an efficient set-theoretic formulation for computing such high-order FRC in simplicial complexes. Significantly, our set theory representation reveals previous computational bottlenecks and also accelerates the computation of FRC. Finally, We provide a pseudo-code, a software implementation coined FastForman, as well as a benchmark comparison with alternative implementations. We envisage that FastForman will be used in Topological and Geometrical Data analysis for high-dimensional complex data sets. Moreover, our development paves the way for future generalisations towards efficient computations of FRC on cell complexes.

physics.data-an↗

Magnetic and geometric effects on the electronic transport of metallic nanotubes

The investigation of curved low-dimensional systems is a topic of great research interest. Such investigations include two-dimensional systems with cylindrical symmetry. In this work, we present a numerical study of the electronic transport properties of metallic nanotubes deviating from the cylindrical form either by having a bump or a depression, and under the influence of a magnetic field. Under these circumstances, it is found that the nanotube may be used as an energy high-pass filter for electrons. It is also shown that the device can be used to tune the angular momentum of transmitted electrons.

cond-mat.mes-hall↗

Using torsion to manipulate spin currents

We address the problem of quantum particles moving on a manifold characterised by the presence of torsion along a preferential axis. In fact, such a torsion may be taylored by the presence of a single screw dislocation, whose Burgers vector measures the torsion amplitude. The problem, first treated in the relativistic limit describing fermions that couple minimally to torsion, is then analysed in the Pauli limit We show that torsion induces a geometric potential and also that it couples generically to the phase of the wave function, giving rise to the possibility of using torsion to manipulate spin currents in the case of spinor wave functions. These results emerge as an alternative strategy for using screw dislocations in the design of spintronic-based devices.

cond-mat.mes-hall↗