arXiv subjects

Fernando Silva-Coira

Publications and source records attributed to Fernando Silva-Coira.

5 recordsLinked to original sources

arXiv2022

Augmented Thresholds for MONI

MONI (Rossi et al., 2022) can store a pangenomic dataset T in small space and later, given a pattern P, quickly find the maximal exact matches (MEMs) of P with respect to T. In this paper we consider its one-pass version (Boucher et al., 2021), whose query times are dominated in our experiments by longest common extension (LCE) queries. We show how a small modification lets us avoid most of these queries and thus significantly speeds up MONI in practice while only slightly increasing its size.

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arXiv2020

Efficient processing of raster and vector data

In this work, we propose a framework to store and manage spatial data, which includes new efficient algorithms to perform operations accepting as input a raster dataset and a vector dataset. More concretely, we present algorithms for solving a spatial join between a raster and a vector dataset imposing a restriction on the values of the cells of the raster; and an algorithm for retrieving K objects of a vector dataset that overlap cells of a raster dataset, such that the K objects are those overlapping the highest (or lowest) cell values among all objects. The raster data is stored using a compact data structure, which can directly manipulate compressed data without the need for prior decompression. This leads to better running times and lower memory consumption. In our experimental evaluation comparing our solution to other baselines, we obtain the best space/time trade-offs.

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arXiv2019

Space- and Time-Efficient Storage of LiDAR Point Clouds

LiDAR devices obtain a 3D representation of a space. Due to the large size of the resulting datasets, there already exist storage methods that use compression and present some properties that resemble those of compact data structures. Specifically, LAZ format allows accesses to a given datum or portion of the data without having to decompress the whole dataset and provides indexation of the stored data. However, LAZ format still have some drawbacks that should be faced. In this work, we propose a new compact data structure for the representation of a cloud of LiDAR points that supports efficient queries, providing indexing capabilities that are superior to those of LAZ format.

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arXiv2018

Towards a compact representation of temporal rasters

Big research efforts have been devoted to efficiently manage spatio-temporal data. However, most works focused on vectorial data, and much less, on raster data. This work presents a new representation for raster data that evolve along time named Temporal k^2 raster. It faces the two main issues that arise when dealing with spatio-temporal data: the space consumption and the query response times. It extends a compact data structure for raster data in order to manage time and thus, it is possible to query it directly in compressed form, instead of the classical approach that requires a complete decompression before any manipulation. In addition, in the same compressed space, the new data structure includes two indexes: a spatial index and an index on the values of the cells, thus becoming a self-index for raster data.

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arXiv2016

Efficient Representation of Multidimensional Data over Hierarchical Domains

We consider the problem of representing multidimensional data where the domain of each dimension is organized hierarchically, and the queries require summary information at a different node in the hierarchy of each dimension. This is the typical case of OLAP databases. A basic approach is to represent each hierarchy as a one-dimensional line and recast the queries as multidimensional range queries. This approach can be implemented compactly by generalizing to more dimensions the $k^2$-treap, a compact representation of two-dimensional points that allows for efficient summarization queries along generic ranges. Instead, we propose a more flexible generalization, which instead of a generic quadtree-like partition of the space, follows the domain hierarchies across each dimension to organize the partitioning. The resulting structure is much more efficient than a generic multidimensional structure, since queries are resolved by aggregating much fewer nodes of the tree.

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