arXiv subjects

Fernando Vericat

Publications and source records attributed to Fernando Vericat.

16 recordsLinked to original sources

arXiv2019

Phaseless Microwave Imaging Of Dielectric Cylinders: An Artificial Neural Networks-Based Approach

An inverse method for parameters estimation of infinite cylinders (the dielectric properties, location, and radius) in two dimensions from amplitude-only microwave information is presented. To this end two different Artificial Neural Networks (ANN) topologies are compared; Multilayer Perceptron (MLP) and a Convolutional Neural Network (CNN). Several simulations employing the Finite Differences in Time Domain (FDTD) method are performed to solve the direct electromagnetic problem and generate training, validation, and test sets for the ANN models. The magnitude of the mean errors in estimating the position and size of the cylinder are up to (1.9 $\pm$ 3.3) mm and (0.2 $\pm$ 0.8) mm for the MLP and CNN, respectively. The magnitude of the mean percentage relative errors in estimating the dielectric properties of the cylinder are up to (6.5 $\pm$ 13.8) % and (0.0 $\pm$ 7.2) % for the MLP and CNN, respectively. The errors in the parameters estimation from the MLP model are low, however, significantly lower errors were obtained with the CNN model. A validation example is shown using a simulation in three dimensions. Measurement examples with homogeneous and heterogeneous cylinders are presented aiming to prove the feasibility of the described method.

physics.app-ph↗

arXiv2019

Microwave Tomography with phaseless data on the calcaneus by means of artificial neural networks

The aim of this study is to use a Multilayer Perceptron (MLP) Artificial Neural Network (ANN) for phaseless imaging the human heel (modeled as a bilayer dielectric media: bone and surrounding tissue) and the calcaneus cross-section size and location using a two dimensional (2D) microwave tomographic array. Computer simulations were performed over 2D dielectric maps inspired by Computed Tomography (CT) images of human heels for training and testing the MLP. A morphometric analysis was performed to account for the scatterer shape influence on the results. A robustness analysis was also conducted in order to study the MLP performance in noisy conditions. The standard deviations of the relative percentage errors on estimating the dielectric properties of the calcaneus bone were relatively high. Regarding the calcaneus surrounding tissue, the dielectric parameters estimations are better, with relative percentage error standard deviations up to $\approx$ 15 %. The location and size of the calcaneus are always properly estimated with absolute error standard deviations up to $\approx $ 3 mm.

physics.med-ph↗

arXiv2018

Hierarchical evolutive systems, fuzzy categories and the living single cell

In this article, the theory of hierarchical evolutive systems of Ehresmann and Vandremeersch [Bull. Math. Bio. 49, 13-50 (1987)] is improved by considering the categories of the theory as fuzzy sets whose elements are the composite objects formed by the arrows and corresponding vertices of their embedded graphs. This way each category can be represented as a point in the states space [0.1]**N. The introduction of a diffeomorphism, that acts in this context as a functor between categories, allows to define a measure preserving dynamical system. In particular, we apply this formalism to describe a living single cell. We propose for its state at a given time a hirerchical category with three levels (molecular, coarse-grained and cellular levels) related by adequate colimits. Each level involves the main functional and structural modules in which the cell can be partitioned. The time evolution of the cell is drived by a transformation which is a N-dimensional generalization of the Ricker map whose parameters we propose to be determined by requiring that, as hallmark of its behavior, the living cell to evolve at the edge of chaos. From the dynamical point of view this property manifests in the fact that the largest Lyapunov exponent is equal to zero. Since in a rather complete model of the living cell the huge number of involved parameters can make of the calculations a hard task, we also propose a toy model, with fewer parameters to be determined, which emphasizes the cellular fission.

q-bio.OT↗

arXiv2017

Sensitivity analysis on imaging the calcaneus using microwaves

The bone quality is asociated with changes in its dielectric properties (permittivity and conductivity). The feasibility of detecting changes in these properties is evaluated using a tomographic array of 16 monopole antennas with z-polarized microwaves at 1.3GHz. The direct problem was evaluated computationally with the Finite-Difference-Time-Domain (FDTD) method. Local and global sensitivity analysis were considered for identifiyng the parameters that most affect the detection. We observed that the direct problem is highly sensitive to the conductivity of the tissues that surround the calcaneus and the one of the calcaneus itself. Global and local sensitivity methods have shown evidences for feasible detection of variation in dielectric properties of bone.

physics.med-ph↗

arXiv2015

Chirality in a quaternionic representation of the genetic code

A quaternionic representation of the genetic code, previously reported by the authors, is updated in order to incorporate chirality of nucleotide bases and amino acids. The original representation assigns to each nucleotide base a prime integer quaternion of norm 7 and involves a function that associates with each codon, represented by three of these quaternions, another integer quaternion (amino acid type quaternion) in such a way that the essentials of the standard genetic code (particulaty its degeneration) are preserved. To show the advantages of such a quaternionic representation we have, in turn, associated with each amino acid of a given protein, besides of the type quaternion, another real one according to its order along the protein (order quaternion) and have designed an algorithm to go from the primary to the tertiary structure of the protein by using type and order quaternions. In this context, we incorporate chirality in our representation by observing that the set of eight integer quaternions of norm 7 can be partitioned into a pair of subsets of cardinality four each with their elements mutually conjugates and by putting they in correspondence one to one with the two sets of enantiomers (D and L) of the four nucleotide bases adenine, cytosine, guanine and uracil, respectively. Thus, guided by two diagrams proposed for the codes evolution, we define functions that in each case assign a L- (D-) amino acid type integer quaternion to the triplets of D- (L-) bases. The assignation is such that for a given D-amino acid, the associated integer quaternion is the conjugate of that one corresponding to the enantiomer L. The chiral type quaternions obtained for the amino acids are used, together with a common set of order quaternions, to describe the folding of the two classes, L and D, of homochiral proteins.

q-bio.OT↗

arXiv2015

Quaternionic representation of the genetic code

A heuristic diagram of the evolution of the standard genetic code is presented. It incorporates, in a way that resembles the energy levels of an atom, the physical notion of broken symmetry and it is consistent with original ideas by Crick on the origin and evolution of the code as well as with the chronological order of appearence of the amino acids along the evolution as inferred from work that mixtures known experimental results with theoretical speculations. Suggested by the diagram we propose a Hamilton quaternions based mathematical representation of the code as it stands now-a-days. The central object in the description is a codon function that assigns to each amino acid an integer quaternion in such a way that the observed code degeneration is preserved. We emphasize the advantages of a quaternionic representation of amino acids taking as an example the folding of proteins. With this aim we propose an algorithm to go from the quaternions sequence to the protein three dimensional structure which can be compared with the corresponding experimental one stored at the Protein Data Bank. In our criterion the mathematical representation of the genetic code in terms of quaternions merits to be taken into account because it describes not only most of the known properties of the genetic code but also opens new perspectives that are mainly derived from the close relationship between quaternions and rotations.

q-bio.OT↗

arXiv2014

A lattice gas of prime numbers and the Riemann Hypothesis

In recent years, there has been some interest in applying ideas and methods taken from Physics in order to approach several challenging mathematical problems, particularly the Riemann Hypothesis. Most of these kind of contributions are suggested by some quantum statistical physics problems or by questions originated in chaos theory. In this letter we show that the real part of the non-trivial zeros of the Riemann zeta function extremizes the grand potential corresponding to a simple model of one-dimensional classical lattice gas, the critical point being located at 1/2 as the Riemann Hypothesis claims.

cond-mat.stat-mech↗

arXiv2013

Modelling of the dielectric properties of trabecular bone samples at microwave frequency

In this paper the dielectric properties of human trabecular bone are evaluated under physiological condition in the microwave range. Assuming a two components medium, simulation and experimental data are presented and discussed. A special experimental setup is developed in order to deal with inhomogeneous samples. Simulation data are obtained using finite difference time domain from a realistic sample. The bone mineral density of the samples are also measured. The simulation and experimental results of the present study suggest that there is a negative relation between bone volume fraction (BV/TV) and permittivity (conductivity): the higher the BV/TV the lower the permittivity (conductivity). This is in agreement with the recently published in vivo data. Keywords: Bone dielectric properties, Microwave tomography, Finite difference time domain.

physics.med-ph↗

arXiv2012

Is there any information on micro-structure in microwave tomography of bone tissue?

In this work, two-dimensional simulations of the microwave dielectric properties of models with ellipses and realistic models of trabecular bone tissue are performed. In these simulations, finite difference time domain methodology has been applied to simulate two-phase structures containing inclusions. The results presented here show that the micro-structure is an important factor in the effective dielectric properties of trabecular bone. We consider the feasibility of using the dielectric behaviour of bone tissue to be an indicator of bone health. The frequency used was 950 MHz. It was found that the dielectric properties can be used as an estimate of the degree of anisotropy of the micro-structure of the trabecular tissue. Conductivity appears to be the most sensitive parameter in this respect. Models with ellipse shaped-inclusions are also tested to study their application to modelling bone tissue. Models with ellipses that had an aspect ratio of a/b = 1.5 showed relatively good agreement when compared with realistic models of bone tissue. According to the results presented here, the anisotropy of trabecular bone must be accounted for when measuring its dielectric properties using microwave imaging.

physics.med-ph↗

arXiv2011

Genetic algorithm for the pair distribution function of the electron gas

The pair distribution function of the electron gas is calculated using a parameterized generalization of quantum hypernetted chain approximation with the parameters being obtained by optimizing the system energy with a genetic algorithm. The functions so obtained are compared with Monte Carlo simulations performed by other authors in its variational and diffusion versions showing a very good agreement especially with the diffusion Monte Carlo results.

cond-mat.stat-mech↗

arXiv2010

Nonmonotonic reversible branch in four model granular beds subjected to vertical vibration

We present results from four independent models of a granular assembly subjected to tapping. We find that the steady-state packing fraction as a function of the tapping intensity is nonmonotonic. In particular, for high tapping intensities, we observe an increase of the packing fraction with tapping strength. This finding challenges the current understanding of compaction of granular media since the steady-state packing fraction is believed to decrease monotonically with increasing tapping intensity. We propose an explanation of our results based on the properties of the arches formed by the particles.

cond-mat.soft↗

arXiv2006

Cluster pair correlation function of simple fluids: energetic connectivity criteria

We consider the clustering of Lennard-Jones particles by using an energetic connectivity criterion proposed long ago by T.L. Hill [J. Chem. Phys. 32, 617 (1955)] for the bond between pairs of particles. The criterion establishes that two particles are bonded (directly connected) if their relative kinetic energy is less than minus their relative potential energy. Thus, in general, it depends on the direction as well as on the magnitude of the velocities and positions of the particles. An integral equation for the pair connectedness function, proposed by two of the authors [Phys Rev. E 61, R6067 (2000)], is solved for this criterion and the results are compared with those obtained from molecular dynamics simulations and from a connectedness Percus-Yevick like integral equation for a velocity-averaged version of Hill's energetic criterion.

cond-mat.soft↗

arXiv2005

Continuum percolation and the liquid-solid coexistence line of simple fluids

We compare the percolation loci for chemical clusters with the liquid-solid transition in the temperature-density phase diagram. Chemical clusters are defined as sets of particles connected through particle-particle bonds that last for a given time tau. By using molecular dynamics simulations of a Lennard-Jones system we obtain the percolation loci at different values of tau as the lines in the temperature-density plane at which the system presents a spanning cluster in 50 percent of the configurations. We find that the percolation loci for chemical clusters shifts rapidly towards high densities as tau is increased. For moderate values of tau this line coincides with the low-density branch of the liquid-solid coexistence curve. This implies that no stable chemical clusters can be found in the fluid phase. In contrast, the percolation loci for physical clusters -sets of particles that remain close together at every instant for a given period tau- tends to a limiting line, as tau tends to infinity, which is far from the liquid-solid transition line.

cond-mat.soft↗

arXiv2004

From Darwin to Sommerfeld: Genetic algorithms and the electron gas

In return for the long-standing contributions of Physics to Biology, now the inverse way is frequently traveled through in order to think about many physics phenomena. In this vein, evolutionary algorithms, particularly genetic algorithms, are being more and more used as a tool to deal with several Physics problems. Here, we show how to apply a genetic algorithm to describe the homogeneous electron gas.

cond-mat.stat-mech↗

arXiv2002

Continuum percolation of simple fluids: Energetic connectivity criteria

During the last few years, a number of works in computer simulation have focused on the clustering and percolation properties of simple fluids based in an energetic connectivity criterion proposed long ago by T.L. Hill [J. Chem. Phys. 23, 617 (1955)]. This connectivity criterion appears to be the most appropriate in the study of gas-liquid phase transition. So far, integral equation theories have relayed on a velocity-averaged version of this criterion. We show, by using molecular dynamics simulations, that this average strongly overestimates percolation densities in the Lennard-Jones fluid making unreliable any prediction based on it. Additionally, we use a recently developed integral equation theory [Phys. Rev. E 61, R6067 (2000)] to show how this velocity-average can be overcome.

cond-mat.soft↗

arXiv2001

New criteria for cluster identification in continuum systems

Two new criteria, that involve the microscopic dynamics of the system, are proposed for the identification of clusters in continuum systems. The first one considers a residence time in the definition of the bond between pairs of particles, whereas the second one uses a life time in the definition of an aggregate. Because of the qualitative features of the clusters yielded by the criteria we call them chemical and physical clusters, respectively. Molecular dynamics results for a Lennard-Jones system and general connectivity theories are presented.

cond-mat.soft↗