arXiv subjects

Fidel Santamaria

Publications and source records attributed to Fidel Santamaria.

3 recordsLinked to original sources

arXiv2022

On the role of theory and modeling in neuroscience

In recent years, the field of neuroscience has gone through rapid experimental advances and a significant increase in the use of quantitative and computational methods. This growth has created a need for clearer analyses of the theory and modeling approaches used in the field. This issue is particularly complex in neuroscience because the field studies phenomena across a wide range of scales and often requires consideration of these phenomena at varying degrees of abstraction, from precise biophysical interactions to the computations they implement. We argue that a pragmatic perspective of science, in which descriptive, mechanistic, and normative approaches each play a distinct role in defining and bridging levels of abstraction will facilitate neuroscientific practice. This analysis leads to methodological suggestions, including selecting a level of abstraction that is appropriate for a given problem, identifying transfer functions to connect models and data, and the use of models themselves as a form of experiment.

q-bio.NC↗

arXiv2022

Development of theoretical frameworks in neuroscience: a pressing need in a sea of data

Neuroscience is undergoing dramatic progress because of the vast data streams derived from the new technologies product of the BRAIN initiative and other enterprises. As any other scientific field, neuroscience benefits from having clear definitions of its theoretical components and their interactions. This allows generating theories that integrate knowledge, provide mechanistic insights, and predict results under new experimental conditions. However, theoretical neuroscience is a heterogeneous field that has not yet agreed on how to build theories or whether it is desirable to have an overarching theory or whether theories are simply tools to understand the brain. Here we advocate for the need of developing theoretical frameworks as a basis of generating common theoretical structures. We enumerate the elements of theoretical frameworks we deem necessary for any theory in neuroscience. In particular, we address the notions of paradigms, models, and scales of organizations. We then identify areas with pressing needs to develop brain theories: integration of statistical and dynamic approaches; multi-scale integration; coding; and interpretability in the context of Artificial Intelligence. We also point out that future theoretical frameworks would benefit from the incorporation of the principles of Evolution as a fundamental structure rather than purely mathematical or engineering principles. Rather than providing definite answers, the objective of this paper is to serve as an initial and succinct presentation of these topics to encourage discussion and further in depth development of each topic.

q-bio.NC↗

arXiv2020

Present and future frameworks of theoretical neuroscience: outcomes of a community discussion

We organized a workshop on the "Present and Future Frameworks of Theoretical Neuroscience", with the support of the National Science Foundation. The objective was to identify the challenges and strategies that this field will need to tackle in order to incorporate vast and multi-scale streams of experimental data from the technologies developed by the BRAIN initiative. The participants, divided in workgroups, identified five key areas that, while not exhaustive, cover multiple aspects of current challenges needed to be developed: Dynamics-statistics; multi-scale integration; coding; brain-body integration; and structure of neuroscience theories. While each area is different, there were coincidences on finding theoretical paths to incorporate biophysics, energetics, and ethology with more abstract coding and computational approaches. Each workgroup has continued to work after the meeting to develop the ideas seeded there, which are started to being published. Here, we provide a perspective of the discussions of each workgroup that point to building on the present foundations of theoretical neuroscience and extend them by incorporating multi-scale information with the objective of providing mechanistic insights into the nervous system.

q-bio.NC↗