arXiv subjects

Florina M. Ciorba

Publications and source records attributed to Florina M. Ciorba.

At least 19 recordsLinked to original sources

arXiv2026

From particles to precision. Simulating subsonic turbulence with Smoothed Particle Hydrodynamics

The numerical simulation of subsonic turbulence with smoothed particle hydrodynamics (SPH) has traditionally been hampered by zeroth-order (E0) errors, inaccurate gradient evaluations, and excessive numerical dissipation. We aim to investigate whether a modern SPH formulation can overcome these challenges by comparing its results to those obtained using moving-mesh and meshless finite-volume methods such as AREPO and GIZMO. For this purpose, we used SPH-EXA, a highly scalable, natively GPU-accelerated, state-of-the-art SPH code. Our results show that SPH-EXA accurately reproduces the Kolmogorov inertial range scaling in the subsonic regime with increasing resolution, closely matching the results of the reference methods. We also identify accurate grad-h terms as critical: a noisy standard implementation can imprint spurious granulation in the density field once dissipation is sufficiently reduced. These results demonstrate that, with appropriate methodological advances, SPH can achieve a level of fidelity in modeling subsonic turbulence comparable to the most advanced Eulerian and moving-mesh approaches.

astro-ph.IM↗

arXiv2026

CARMA: Collocation-Aware Resource Manager

GPUs running deep learning (DL) workloads are frequently underutilized. Collocating multiple DL training tasks on the same GPU can improve utilization but introduces two key risks: (1) out-of-memory (OOM) crashes for newly scheduled tasks, and (2) severe performance interference among co-running tasks, which can negate any throughput gains. These issues reduce system robustness, quality of service, and energy efficiency. We present CARMA, a task-level, collocation-aware resource manager for the server-scale. CARMA addresses collocation challenges via (1) fine-grained monitoring and bookkeeping of GPUs and a collocation risk analysis that filters out the high-risk GPUs; (2) task placement policies that cap GPU utilization to limit OOMs and interference; (3) integration of GPU memory need estimators for DL tasks to minimize OOMs during collocation; and (4) a lightweight recovery method that relaunches jobs crashed due to OOMs. Our evaluation on a DL training workload derived from real-world traces shows that CARMA uses GPUs more efficiently by making more informed collocation decisions: for the best-performing collocation policy, CARMA increases GPU streaming multiprocessor (SM) utilization by 54%, the parallelism achieved per SM by 61%, and memory use by 62%. This results in a ~35% and ~15% reduction in the end-to-end execution time (makespan) and GPU energy consumption, respectively, for this workload.

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arXiv2025

An Autonomy Loop for Dynamic HPC Job Time Limit Adjustment

High Performance Computing (HPC) systems rely on fixed user-provided estimates of job time limits. These estimates are often inaccurate, resulting in inefficient resource use and the loss of unsaved work if a job times out shortly before reaching its next checkpoint. This work proposes a novel feedback-driven autonomy loop that dynamically adjusts HPC job time limits based on checkpoint progress reported by applications. Our approach monitors checkpoint intervals and queued jobs, enabling informed decisions to either early cancel a job after its last completed checkpoint or extend the time limit sufficiently to accommodate the next checkpoint. The objective is to minimize tail waste, that is, the computation that occurs between the last checkpoint and the termination of a job, which is not saved and hence wasted. Through experiments conducted on a subset of a production workload trace, we show a 95% reduction of tail waste, which equates to saving approximately 1.3% of the total CPU time that would otherwise be wasted. We propose various policies that combine early cancellation and time limit extension, achieving tail waste reduction while improving scheduling metrics such as weighted average job wait time. This work contributes an autonomy loop for improved scheduling in HPC environments, where system job schedulers and applications collaborate to significantly reduce resource waste and improve scheduling performance.

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arXiv2025

SIREN: Software Identification and Recognition in HPC Systems

HPC systems use monitoring and operational data analytics to ensure efficiency, performance, and orderly operations. Application-specific insights are crucial for analyzing the increasing complexity and diversity of HPC workloads, particularly through the identification of unknown software and recognition of repeated executions, which facilitate system optimization and security improvements. However, traditional identification methods using job or file names are unreliable for arbitrary user-provided names (a.out). Fuzzy hashing of executables detects similarities despite changes in executable version or compilation approach while preserving privacy and file integrity, overcoming these limitations. We introduce SIREN, a process-level data collection framework for software identification and recognition. SIREN improves observability in HPC by enabling analysis of process metadata, environment information, and executable fuzzy hashes. Findings from a first opt-in deployment campaign on LUMI show SIREN's ability to provide insights into software usage, recognition of repeated executions of known applications, and similarity-based identification of unknown applications.

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arXiv2025

A Comparative Study of OpenMP Scheduling Algorithm Selection Strategies

Scientific and data science applications are becoming increasingly complex, with growing computational and memory demands. Modern high performance computing (HPC) systems provide high parallelism and heterogeneity across nodes, devices, and cores. To achieve good performance, effective scheduling and load balancing techniques are essential. Parallel programming frameworks such as OpenMP now offer a variety of advanced scheduling algorithms to support diverse applications and platforms. This creates an instance of the scheduling algorithm selection problem, which involves identifying the most suitable algorithm for a given combination of workload and system characteristics. In this work, we explore learning-based approaches for selecting scheduling algorithms in OpenMP. We propose and evaluate expert-based and reinforcement learning (RL)-based methods, and conduct a detailed performance analysis across six applications and three systems. Our results show that RL methods are capable of learning high-performing scheduling decisions, although they require significant exploration, with the choice of reward function playing a key role. Expert-based methods, in contrast, rely on prior knowledge and involve less exploration, though they may not always identify the optimal algorithm for a specific application-system pair. By combining expert knowledge with RL-based learning, we achieve improved performance and greater adaptability. Overall, this work demonstrates that dynamic selection of scheduling algorithms during execution is both viable and beneficial for OpenMP applications. The approach can also be extended to MPI-based programs, enabling optimization of scheduling decisions across multiple levels of parallelism.

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arXiv2025

Scalable Genomic Context Analysis with GCsnap2 on HPC Clusters

GCsnap2 Cluster is a scalable, high performance tool for genomic context analysis, developed to overcome the limitations of its predecessor, GCsnap1 Desktop. Leveraging distributed computing with mpi4py[.]futures, GCsnap2 Cluster achieved a 22x improvement in execution time and can now perform genomic context analysis for hundreds of thousands of input sequences in HPC clusters. Its modular architecture enables the creation of task-specific workflows and flexible deployment in various computational environments, making it well suited for bioinformatics studies of large-scale datasets. This work highlights the potential for applying similar approaches to solve scalability challenges in other scientific domains that rely on large-scale data analysis pipelines.

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arXiv2024

Using Malware Detection Techniques for HPC Application Classification

HPC systems face security and compliance challenges, particularly in preventing waste and misuse of computational resources by unauthorized or malicious software that deviates from allocation purpose. Existing methods to classify applications based on job names or resource usage are often unreliable or fail to capture applications that have different behavior due to different inputs or system noise. This research proposes an approach that uses similarity-preserving fuzzy hashes to classify HPC application executables. By comparing the similarity of SSDeep fuzzy hashes, a Random Forest Classifier can accurately label applications executing on HPC systems including unknown samples. We evaluate the Fuzzy Hash Classifier on a dataset of 92 application classes and 5333 distinct application samples. The proposed method achieved a macro f1-score of 90% (micro f1-score: 89%, weighted f1-score: 90%). Our approach addresses the critical need for more effective application classification in HPC environments, minimizing resource waste, and enhancing security and compliance.

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arXiv2024

Autonomy Loops for Monitoring, Operational Data Analytics, Feedback, and Response in HPC Operations

Many High Performance Computing (HPC) facilities have developed and deployed frameworks in support of continuous monitoring and operational data analytics (MODA) to help improve efficiency and throughput. Because of the complexity and scale of systems and workflows and the need for low-latency response to address dynamic circumstances, automated feedback and response have the potential to be more effective than current human-in-the-loop approaches which are laborious and error prone. Progress has been limited, however, by factors such as the lack of infrastructure and feedback hooks, and successful deployment is often site- and case-specific. In this position paper we report on the outcomes and plans from a recent Dagstuhl Seminar, seeking to carve a path for community progress in the development of autonomous feedback loops for MODA, based on the established formalism of similar (MAPE-K) loops in autonomous computing and self-adaptive systems. By defining and developing such loops for significant cases experienced across HPC sites, we seek to extract commonalities and develop conventions that will facilitate interoperability and interchangeability with system hardware, software, and applications across different sites, and will motivate vendors and others to provide telemetry interfaces and feedback hooks to enable community development and pervasive deployment of MODA autonomy loops.

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arXiv2023

Accurate Measurement of Application-level Energy Consumption for Energy-Aware Large-Scale Simulations

Sustainability in high performance computing (HPC) is a major challenge not only for HPC centers and their users, but also for society as the climate goals become stricter. A lot of effort went into reducing the energy consumption of systems in general. Even though certain efforts to optimize the energy-efficiency of HPC workloads exist, most such efforts propose solutions targeting CPUs. As HPC systems shift more and more to GPU-centric architectures, simulation codes increasingly adopt GPU-programming models. This leads to an urgent need to increase the energy-efficiency of GPU-enabled codes. However, studies for reducing the energy consumption of large-scale simulations executing on CPUs and GPUs have received insufficient attention. In this work, we enable accurate power and energy measurements using an open-source toolkit across a range of CPU+GPU node architectures. We use this approach in SPH-EXA, an open-source GPU-centric astrophysical and cosmological simulation framework. We show that with simple code instrumentation, users can accurately measure power and energy related data about their application, beyond data provided by HPC systems alone. The accurate power and energy data provide significant insight to users for conducting energy-aware computational experiments and future energy-aware code development.

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arXiv2023

DaphneSched: A Scheduler for Integrated Data Analysis Pipelines

DAPHNE is a new open-source software infrastructure designed to address the increasing demands of integrated data analysis (IDA) pipelines, comprising data management (DM), high performance computing (HPC), and machine learning (ML) systems. Efficiently executing IDA pipelines is challenging due to their diverse computing characteristics and demands. Therefore, IDA pipelines executed with the DAPHNE infrastructure require an efficient and versatile scheduler to support these demands. This work introduces DaphneSched, the task-based scheduler at the core of DAPHNE. DaphneSched is versatile by incorporating eleven task partitioning and three task assignment techniques, bringing the state-of-the-art closer to the state-of-the-practice task scheduling. To showcase DaphneSched's effectiveness in scheduling IDA pipelines, we evaluate its performance on two applications: a product recommendation system and a linear regression model training. We conduct performance experiments on multicore platforms with 20 and 56 cores. The results show that the versatility of DaphneSched enabled combinations of scheduling strategies that outperform commonly used scheduling techniques by up to 13%. This work confirms the benefits of employing DaphneSched for the efficient execution of applications with IDA pipelines.

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arXiv2023

Cornerstone: Octree Construction Algorithms for Scalable Particle Simulations

This paper presents an octree construction method, called Cornerstone, that facilitates global domain decomposition and interactions between particles in mesh-free numerical simulations. Our method is based on algorithms developed for 3D computer graphics, which we extend to distributed high performance computing (HPC) systems. Cornerstone yields global and locally essential octrees and is able to operate on all levels of tree hierarchies in parallel. The resulting octrees are suitable for supporting the computation of various kinds of short and long range interactions in N-body methods, such as Barnes-Hut and the Fast Multipole Method (FMM). While we provide a CPU implementation, Cornerstone may run entirely on GPUs. This results in significantly faster tree construction compared to execution on CPUs and serves as a powerful building block for the design of simulation codes that move beyond an offloading approach, where only numerically intensive tasks are dispatched to GPUs. With data residing exclusively in GPU memory, Cornerstone eliminates data movements between CPUs and GPUs. As an example, we employ Cornerstone to generate locally essential octrees for a Barnes-Hut treecode running on almost the full LUMI-G system with up to 8 trillion particles.

astro-ph.IM↗

arXiv2022

Challenges and Opportunities of Machine Learning for Monitoring and Operational Data Analytics in Quantitative Codesign of Supercomputers

This work examines the challenges and opportunities of Machine Learning (ML) for Monitoring and Operational Data Analytics (MODA) in the context of Quantitative Codesign of Supercomputers (QCS). MODA is employed to gain insights into the behavior of current High Performance Computing (HPC) systems to improve system efficiency, performance, and reliability (e.g. through optimizing cooling infrastructure, job scheduling, and application parameter tuning). In this work, we take the position that QCS in general, and MODA in particular, require close exchange with the ML community to realize the full potential of data-driven analysis for the benefit of existing and future HPC systems. This exchange will facilitate identifying the appropriate ML methods to gain insights into current HPC systems and to go beyond expert-based knowledge and rules of thumb.

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arXiv2021

An Execution Fingerprint Dictionary for HPC Application Recognition

Applications running on HPC systems waste time and energy if they: (a) use resources inefficiently, (b) deviate from allocation purpose (e.g. cryptocurrency mining), or (c) encounter errors and failures. It is important to know which applications are running on the system, how they use the system, and whether they have been executed before. To recognize known applications during execution on a noisy system, we draw inspiration from the way Shazam recognizes known songs playing in a crowded bar. Our contribution is an Execution Fingerprint Dictionary (EFD) that stores execution fingerprints of system metrics (keys) linked to application and input size information (values) as key-value pairs for application recognition. Related work often relies on extensive system monitoring (many system metrics collected over large time windows) and employs machine learning methods to identify applications. Our solution only uses the first 2 minutes and a single system metric to achieve F-scores above 95 percent, providing comparable results to related work but with a fraction of the necessary data and a straightforward mechanism of recognition.

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arXiv2021

LB4OMP: A Dynamic Load Balancing Library for Multithreaded Applications

Exascale computing systems will exhibit high degrees of hierarchical parallelism, with thousands of computing nodes and hundreds of cores per node. Efficiently exploiting hierarchical parallelism is challenging due to load imbalance that arises at multiple levels. OpenMP is the most widely-used standard for expressing and exploiting the ever-increasing node-level parallelism. The scheduling options in OpenMP are insufficient to address the load imbalance that arises during the execution of multithreaded applications. The limited scheduling options in OpenMP hinder research on novel scheduling techniques which require comparison with others from the literature. This work introduces LB4OMP, an open-source dynamic load balancing library that implements successful scheduling algorithms from the literature. LB4OMP is a research infrastructure designed to spur and support present and future scheduling research, for the benefit of multithreaded applications performance. Through an extensive performance analysis campaign, we assess the effectiveness and demystify the performance of all loop scheduling techniques in the library. We show that, for numerous applications-systems pairs, the scheduling techniques in LB4OMP outperform the scheduling options in OpenMP. Node-level load balancing using LB4OMP leads to reduced cross-node load imbalance and to improved MPI+OpenMP applications performance, which is critical for Exascale computing.

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arXiv2021

Mapping Matters: Application Process Mapping on 3-D Processor Topologies

Applications' performance is influenced by the mapping of processes to computing nodes, the frequency and volume of exchanges among processing elements, the network capacity, and the routing protocol. A poor mapping of application processes degrades performance and wastes resources. Process mapping is frequently ignored as an explicit optimization step since the system typically offers a default mapping, users may lack awareness of their applications' communication behavior, and the opportunities for improving performance through mapping are often unclear. This work studies the impact of application process mapping on several processor topologies. We propose a workflow that renders mapping as an explicit optimization step for parallel applications. We apply the workflow to a set of four applications, twelve mapping algorithms, and three direct network topologies. We assess the mappings' quality in terms of volume, frequency, and distance of exchanges using metrics such as dilation (measured in hop$\cdot$Byte). With a parallel trace-based simulator, we predict the applications' execution on the three topologies using the twelve mappings. We evaluate the impact of process mapping on the applications' simulated performance in terms of execution and communication times and identify the mappings that achieve the highest performance in both cases. To ensure the correctness of the simulations, we compare the pre- and post-simulation results. This work emphasizes the importance of process mapping as an explicit optimization step and offers a solution for parallel applications to exploit the full potential of the allocated resources on a given system.

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arXiv2021

A Resourceful Coordination Approach for Multilevel Scheduling

HPC users aim to improve their execution times without particular regard for increasing system utilization. On the contrary, HPC operators favor increasing the number of executed applications per time unit and increasing system utilization. This difference in the preferences promotes the following operational model. Applications execute on exclusively-allocated computing resources for a specific time and applications are assumed to utilize the allocated resources efficiently. In many cases, this operational model is inefficient, i.e., applications may not fully utilize their allocated resources. This inefficiency results in increasing application execution time and decreasing system utilization. In this work, we propose a resourceful coordination approach (RCA) that enables the cooperation between, currently independent, batch- and application-level schedulers. RCA enables application schedulers to share their allocated but idle computing resources with other applications through the batch system. The effective system performance (ESP) benchmark is used to assess the proposed approach. The results show that RCA increased system utilization up to 12.6% and decreased system makespan by the same percent without affecting applications' performance.

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arXiv2021

A Distributed Chunk Calculation Approach for Self-scheduling of Parallel Applications on Distributed-memory Systems

Loop scheduling techniques aim to achieve load-balanced executions of scientific applications. Dynamic loop self-scheduling (DLS) libraries for distributed-memory systems are typically MPI-based and employ a centralized chunk calculation approach (CCA) to assign variably-sized chunks of loop iterations. We present a distributed chunk calculation approach (DCA) that supports various types of DLS techniques. Using both CCA and DCA, twelve DLS techniques are implemented and evaluated in different CPU slowdown scenarios. The results show that the DLS techniques implemented using DCA outperform their corresponding ones implemented with CCA, especially in extreme system slowdown scenarios.

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arXiv2020

Resiliency in Numerical Algorithm Design for Extreme Scale Simulations

This work is based on the seminar titled ``Resiliency in Numerical Algorithm Design for Extreme Scale Simulations'' held March 1-6, 2020 at Schloss Dagstuhl, that was attended by all the authors. Naive versions of conventional resilience techniques will not scale to the exascale regime: with a main memory footprint of tens of Petabytes, synchronously writing checkpoint data all the way to background storage at frequent intervals will create intolerable overheads in runtime and energy consumption. Forecasts show that the mean time between failures could be lower than the time to recover from such a checkpoint, so that large calculations at scale might not make any progress if robust alternatives are not investigated. More advanced resilience techniques must be devised. The key may lie in exploiting both advanced system features as well as specific application knowledge. Research will face two essential questions: (1) what are the reliability requirements for a particular computation and (2) how do we best design the algorithms and software to meet these requirements? One avenue would be to refine and improve on system- or application-level checkpointing and rollback strategies in the case an error is detected. Developers might use fault notification interfaces and flexible runtime systems to respond to node failures in an application-dependent fashion. Novel numerical algorithms or more stochastic computational approaches may be required to meet accuracy requirements in the face of undetectable soft errors. The goal of this Dagstuhl Seminar was to bring together a diverse group of scientists with expertise in exascale computing to discuss novel ways to make applications resilient against detected and undetected faults. In particular, participants explored the role that algorithms and applications play in the holistic approach needed to tackle this challenge.

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