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François Bodin

Publications and source records attributed to François Bodin.

5 recordsLinked to original sources

How Much Does Submitting a Burst of Jobs Impact Waiting Time? An Analysis of the Jean Zay Workload Trace

This paper examines job waiting times on the Jean Zay supercomputer at IDRIS (Institut du D{é}veloppement et des Ressources en Informatique Scientifique http://www.idris.fr/), driven by the need to improve scheduling strategies for crossfacility scientific workflows. Drawing on large workload traces, we show that job waiting times are not independent of one another but are instead correlated through job bursts-batches of identical jobs submitted together, also called ``flurries''. We introduce a method for quantifying the effect of these bursts on waiting times, and find a strong Pearson correlation between waiting time and a job's rank within its burst. This correlation is above 0.8 for more than 40% of the jobs. We further derive an exact formula for the Slurm fairshare factor based on a convolution product, showing that the burst penalty operates on a much shorter timescale than fairshare itself-pointing to a distinct throttling mechanism specifically targeting bulk submissions. Once burst effects are accounted for, we use Welch's t-test to find that partition occupancy and number of requested cores have a significant effect on waiting time, though the effect is not significant for all partitions.

stat.AP↗

Mathematical Modeling of a Cognitive Continuum Digital Shadow for Large-Scale, Cross-Facility Workflows

We present the mathematical foundations of a \emph{Cognitive Continuum Digital Shadow} (CCDS), a decision-support layer between users and the cross-facility infrastructure---instruments, networks, data stores and compute centers---of exascale and post-exascale scientific workflows. The CCDS couples a state-space representation of the continuum with multistage stochastic programming, so that deployment scenarios can be explored and optimized \emph{before} jobs are launched. This allows operators and users to quantify the cost, makespan and energy trade-offs of a workflow under uncertain resource availability, and hedge their decisions accordingly. We formulate the underlying optimization as a multimode, resource-constrained, stochastic supply-chain network design problem and demonstrate it on a realistic genomics workflow scheduled across heterogeneous HPC and data-center resources. This is the first of three papers; the second treats the underlying software architecture and the third reports large-scale use-cases.

cs.PF↗

A description of the radio astronomy data processing tool DDF Pipeline

This paper presents the DDF Pipeline, a radio astronomy data processing tool initially designed for the LOw-Frequency ARray (LO- FAR) radio-telescope and a candidate for processing data from the Square Kilometre Array (SKA). This work describes the DDF Pipeline software and presents a coarse-grain profiling execution to characterize its performance.

astro-ph.IM↗

Cybercosm: New Foundations for a Converged Science Data Ecosystem

Scientific communities naturally tend to organize around data ecosystems created by the combination of their observational devices, their data repositories, and the workflows essential to carry their research from observation to discovery. However, these legacy data ecosystems are now breaking down under the pressure of the exponential growth in the volume and velocity of these workflows, which are further complicated by the need to integrate the highly data intensive methods of the Artificial Intelligence revolution. Enabling ground breaking science that makes full use of this new, data saturated research environment will require distributed systems that support dramatically improved resource sharing, workflow portability and composability, and data ecosystem convergence. The Cybercosm vision presented in this white paper describes a radically different approach to the architecture of distributed systems for data-intensive science and its application workflows. As opposed to traditional models that restrict interoperability by hiving off storage, networking, and computing resources in separate technology silos, Cybercosm defines a minimally sufficient hypervisor as a spanning layer for its data plane that virtualizes and converges the local resources of the system's nodes in a fully interoperable manner. By building on a common, universal interface into which the problems that infect today's data-intensive workflows can be decomposed and attacked, Cybercosm aims to support scalable, portable and composable workflows that span and merge the distributed data ecosystems that characterize leading edge research communities today.

cs.NI↗