arXiv subjects

Francisco Alarcón

Publications and source records attributed to Francisco Alarcón.

5 recordsLinked to original sources

arXiv2026

Microscopic dynamics of contagion using active Brownian particles: universal scaling and propagation controlled by protection

Understanding how individual protection and population density influence epidemic spreading remains a central challenge in epidemiology. While classical compartmental models successfully describe the temporal evolution of epidemics, they do not explicitly account for the microscopic motion and spatial organisation of individuals. Here, we investigate contagion dynamics using an agent-based model of Active Brownian Particles (ABPs), where self-propelled agents interact through local contact and a prescribed fraction of the population is protected. By systematically varying the protected-agent fraction and the population density, we identify two distinct contagion regimes separated by a crossover protection of approximately $30\%$. Below this threshold, the maximum contagion rate follows the universal scaling $ν_{\mathrm{max}}\proptoϕ^{1/2}$, indicating that disease transmission is governed primarily by frequency of encounters. Above the threshold, universal scaling is lost and protection becomes the dominant mechanism controlling epidemic spreading, with the strongest suppression occurring in low-density populations. These results demonstrate that microscopic active-matter models provide a powerful framework for investigating epidemic dynamics beyond the assumptions of well-mixed population models and reveal how spatial organisation and individual protection jointly determine contagion dynamics.

cond-mat.stat-mech↗

arXiv2026

Confinement and shear effects on the rotational diffusion of a minimal virus-inspired colloidal particle

The rotational diffusion of a rigid spherical body decorated with dimers in an explicit fluid environment is reported. This model acts as a simplified representation of an enveloped virus bearing peplomers immersed in a coarse-grained fluid. Using dissipative particle dynamics, we explicitly study the hydrodynamic effects on the rotational diffusion of this virus-inspired particle subjected to oscillatory shear flow and confined between two solid-like surfaces. Since the rotational response depends on the type of imposed flow, we first characterize the oscillatory shear, identifying distinct flow regimes in terms of the so-called Péclet number, $Pe$. Our findings indicate that, under confinement, the rotational diffusivity is strongly modulated by the oscillatory flow amplitude and only weakly affected by the number of peplomers, since their effect is mainly determined by their dimeric structure and associated effective size. For high $Pe$, the rotational diffusion coefficient, $D_{r}$, tends to decrease as the number of peplomers ($N_{s}$) increases, whereas at low $Pe$, rotational diffusion becomes weakly dependent on the number of peplomers. However, at intermediate values of $Pe$, the interplay between oscillatory forcing and thermal fluctuations prevents the emergence of a clear trend between $D_{r}$ and $N_{s}$. Our results provide a clear picture of how, in confined environments, the interplay between fluid flow and thermal fluctuations affects the rotational diffusion of spiked particles, thereby helping to explain how fluid conditions can modify the alignment of peplomers with their potential targets.

cond-mat.soft↗

arXiv2020

Fast quasi-conformal regional flattening of the left atrium

Two-dimensional representation of 3D anatomical structures is a simple and intuitive way for analysing patient information across populations and image modalities. It also allows convenient visualizations that can be included in clinical reports for a fast overview of the whole structure. While cardiac ventricles, especially the left ventricle, have an established standard representation (e.g. bull's eye plot), the 2D depiction of the left atrium (LA) is challenging due to its sub-structural complexity including the pulmonary veins (PV) and the left atrial appendage (LAA). Quasi-conformal flattening techniques, successfully applied to cardiac ventricles, require additional constraints in the case of the LA to place the PV and LAA in the same geometrical 2D location for different cases. Some registration-based methods have been proposed but 3D (or 2D) surface registration is time-consuming and prone to errors if the geometries are very different. We propose a novel atrial flattening methodology where a quasi-conformal 2D map of the LA is obtained quickly and without errors related to registration. In our approach, the LA is divided into 5 regions which are then mapped to their analogue two-dimensional regions. A dataset of 67 human left atria from magnetic resonance images (MRI) was studied to derive a population-based 2D LA template representing the averaged relative locations of the PVs and LAA. The clinical application of the proposed methodology is illustrated on different use cases including the integration of MRI and electroanatomical data.

cs.GR↗

arXiv2016

Morphology of clusters of attractive dry and wet self-propelled spherical particle suspensions

In order to asses the effect of hydrodynamics in the assembly of active attractive spheres, we simulate a semi-dilute suspension of attractive self-propelled spherical particles in a quasi two dimensional geometry comparing the case with and without hydrodynamics interactions. To start with, independently on the presence of hydrodynamics, we observe that depending on the ratio between attraction and propulsion, particles either coarsen or aggregate forming finite-size clusters. Focusing on the clustering regime, we characterize two different clusters parameters, i.e. their morphology and orientational order, and compare the case when active particles behave either as pushers or pullers (always in the regime where inter-particles attractions competes with self-propulsion). Studying cluster phases for squirmers with respect to those obtained for active Brownian disks (indicated as ABP), we have shown that hydrodynamics alone can sustain a cluster phase of active swimmers (pullers), while ABP form cluster phases due to the competition between attraction and self propulsion. The structural properties of the cluster phases of squirmers and ABP are similar, although squirmers show sensitivity to active stresses. Active Brownian disks resemble weakly pusher squirmer suspensions in terms of cluster size distribution, structure of the radius of gyration on cluster size and degree of cluster polarity.

cond-mat.soft↗

arXiv2016

Spontaneous aggregation and global polar ordering in squirmer suspensions

We have developed numerical simulations of three dimensional suspensions of active particles to characterize the capabilities of the hydrodynamic stresses induced by active swimmers to promote global order and emergent structures in active suspensions. We have considered squirmer suspensions embedded in a fluid modeled under a Lattice Boltzmann scheme. We have found that active stresses play a central role to decorrelate the collective motion of squirmers and that contractile squirmers develop significant aggregates.

cond-mat.soft↗