arXiv subjects

Francisco J. Cao-García

Publications and source records attributed to Francisco J. Cao-García.

5 recordsLinked to original sources

arXiv2024

Extinction in agent-based and collective models of bet-hedging

Bet-hedging is a phenotype diversification strategy that combines a fast-growing vulnerable phenotype with a slow-growing resistant phenotype. In environments switching between favorable and unfavorable conditions, bet-hedging optimizes growth and reduces fluctuations over a long time, which is expected to reduce extinction risk. Here, we address directly how bet-hedging can reduce extinction probability in an agent-based model. An agent-based model is appropriate for studying extinction due to the low number of individuals close to extinction. We also show that the agent-based model converges to the collective model behavior for populations of $100$ individuals or more. However, the collective model provides relevant qualitative insight even for low populations. The collective model provides expressions for extinction that stress the relevance of the population number, showing that a factor four increase in the total population has a greater effect than a change of strategy from maximum growth to minimal extinction. This work provides further insight into the impact of finite population effects on the bet-hedging strategy's success.

q-bio.PE↗

arXiv2023

Information in feedback ratchets

Feedback control uses the state information of the system to actuate on it. The information used implies an effective entropy reduction of the controlled system, potentially increasing its performance. How to compute this entropy reduction has been formally shown for a general system, and has been explicitly computed for spatially discrete systems. Here, we address a relevant example of how to compute the entropy reduction by information in a spatially continuous feedback-controlled system. Specifically, we consider a feedback flashing ratchet, which constitutes a paradigmatic example for the role of information and feedback in the dynamics and thermodynamics of transport induced by the rectification of Brownian motion. A Brownian particle moves in a periodic potential that is switched on and off by a controller, with the latter performing the switching depending on the system state. We show how the entropy reduction can be computed from the entropy of a sequence of control actions, and also discuss the required sampling effort for its accurate computation. Moreover, the output power developed by the particle against an external force is investigated, which -- for some values of the system parameters -- is shown to become larger than the input power due to the switching of the potential: the apparent efficiency of the ratchet thus becomes higher than one, if the entropy reduction contribution is not considered. This result highlights the relevance of including the entropy reduction by information in the thermodynamic balance of feedback controlled devices, specifically when writing the second principle: the inclusion of the entropy reduction by information leads to a well-behaved efficiency over all the range of parameters investigated.

cond-mat.stat-mech↗

arXiv2022

Spatial and Ecological Scaling of Stability in Spatial Community Networks

There are many scales at which to quantify stability in spatial and ecological networks. Local-scale analyses focus on specific nodes of the spatial network, while regional-scale analyses consider the whole network. Similarly, species- and community-level analyses either account for single species or for the whole community. Furthermore, stability itself can be defined in multiple ways, including resistance (the inverse of the relative displacement caused by a perturbation), initial resilience (the rate of return after a perturbation), and invariability (the inverse of the relative amplitude of the population fluctuations). Here, we analyze the scale-dependence of these stability properties. More specifically, we ask how spatial scale (local vs regional) and ecological scale (species vs community) influence these stability properties. We find that regional initial resilience is the weighted arithmetic mean of the local initial resiliences. The regional resistance is the harmonic mean of local resistances, which makes regional resistance particularly vulnerable to nodes with low stability, unlike regional initial resilience. Analogous results hold for the relationship between community- and species-level initial resilience and resistance. Both resistance and initial resilience are ``scale-free'' properties: regional and community values are simply the biomass-weighted means of the local and species values, respectively. Thus, one can easily estimate both stability metrics of whole networks from partial sampling. In contrast, invariability generally is greater at the regional and community-level than at the local and species-level, respectively. Hence, estimating the invariability of spatial or ecological networks from measurements at the local or species level is more complicated, requiring an unbiased estimate of the network (i.e. region or community) size.

q-bio.PE↗

arXiv2021

Dispersal-induced resilience to stochastic environmental fluctuations in populations with Allee effect

Many species are unsustainable at small population densities (Allee Effect), i.e., below a threshold named Allee threshold, the population decreases instead of growing. In a closed local population, environmental fluctuations always lead to extinction. Here, we show how, in spatially extended habitats, dispersal can lead to a sustainable population in a region, provided the amplitude of environmental fluctuations is below an extinction threshold. We have identified two types of sustainable populations: high-density and low-density populations (through a mean-field approximation, valid in the limit of large dispersal length). Our results show that patches where population is high, low or extinct, coexist when the population is close to global extinction (even for homogeneous habitats). The extinction threshold is maximum for characteristic dispersal distances much larger than the spatial scale of synchrony of environmental fluctuations. The extinction threshold increases proportionally to the square root of the dispersal rate and decreases with the Allee threshold. The low-density population solution can allow understanding difficulties in recovery after harvesting. This theoretical framework provides a novel approach to address other factors, such as habitat fragmentation or harvesting, impacting population resilience to environmental fluctuations.

q-bio.PE↗

arXiv2021

Scaling of population resilience with dispersal length and habitat size

Environmental fluctuations can create population-depleted areas and even extinct areas for the population. This effect is more severe in the presence of the Allee effect (decreasing growth rate at low population densities). Dispersal inside the habitat provides a rescue effect on population-depleted areas, enhancing the population resilience to environmental fluctuations. Habitat reduction decreases the effectiveness of the dispersal rescue mechanism. We report here how the population resilience to environmental fluctuations decreases when the dispersal length or the habitat size are reduced. The resilience reduction is characterized by a decrease of the extinction threshold for environmental fluctuations. The extinction threshold is shown to scale with the ratio between the dispersal length and the scale of environmental synchrony, i.e., it is the dispersal connection between non-environmentally-correlated regions that provides resilience to environmental fluctuations. Habitat reduction also decreases the resilience to environmental fluctuations, when the habitat size is similar to or smaller than the characteristic dispersal distances. The power laws of these scaling behaviors are characterized here. Alternative scaling functions with spatial scales of population synchrony are found to fit the simulations worse. These results support the dispersal length as the critical scale for extinction induced by habitat reduction.

q-bio.PE↗