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Francisco Monroy

Publications and source records attributed to Francisco Monroy.

13 recordsLinked to original sources

Variational Openness: An Open Formulation of Hamilton's Principle

Since its classical origin, Hamilton's principle has been formulated under an exact closure condition: admissible variations vanish at the boundaries of the variational domain. This condition removes the boundary term in the first variation of the action and yields the Euler--Lagrange equation. Although natural for isolated deterministic systems, fixed boundary admissibility is usually treated as a technical condition rather than as a physical closure hypothesis. Here we ask what follows when this hypothesis is made explicit and relaxed. We introduce \emph{variational openness} as the retention of the boundary contribution in the variational balance. The retained term defines a boundary-openness density, which must be projected onto admissible variations before it becomes a dynamical source. In this formulation, the classical Euler--Lagrange equation is recovered as the exact-closure limit of an open variational balance; the source term is therefore identified with incomplete variational closure rather than with an externally imposed force. The framework is illustrated through three elementary examples: an open harmonic oscillator, a finite-compliance boundary, and a delayed oscillator with memory. These examples show how boundary openness can produce forcing, partial closure, history dependence, and non-Markovian structure while preserving standard mechanics in the closed limit. The resulting perspective suggests that Hamiltonian mechanics may be understood as the mechanics of variationally closed systems and motivates an open Hamilton--Jacobi theory in which admissibility itself becomes dynamical.

physics.class-ph

Variational Boundary Fluctuations as a First-Principles Origin of Langevin Noise

Stochastic forces are usually postulated or obtained by eliminating environmental degrees of freedom. Here we identify a variational origin: fluctuating endpoint data in Hamilton's principle induce fluctuations of the on-shell action. Hamilton--Jacobi propagation transports this boundary imprint, whose gradient generates an effective Langevin force inherited from boundary-action fluctuations. The resulting force is not freely specifiable: its amplitude is filtered by the Hessian of Hamilton's principal function, yielding multiplicative and state-dependent noise. Homogeneous additive Langevin forcing is recovered only as a Markovian coarse-grained limit.

cond-mat.stat-mech

Variational Openness

Variational principles in mechanics, field theory and geometric analysis are usually formulated on closed admissible classes, where boundary variations are either fixed or independently cancelled through natural boundary conditions. Variational openness is formulated here as a conservative extension of this setting. Its central premise is that stationarity requires cancellation of the total first variation, not necessarily separate cancellation of bulk and boundary contributions. Separate Euler--Lagrange and boundary equations arise only when admissible variations are independently localizable. Two regimes are distinguished. In separable open systems, bulk and boundary variations remain independently testable, and stationarity yields the usual interior equation together with an open boundary balance. In regulated open systems, admissible variations form a graph subspace in which bulk and boundary displacements are linked by a compatibility operator. Stationarity then becomes a projected balance on the admissible exchange space, allowing nontrivial bulk--boundary action exchange before total cancellation occurs. At second order, the open action defines a closed quadratic form on the admissible graph space. For pressure-like boundary couplings, the open Hessian is obtained by subtracting from the stabilizing geometric form a boundary-pressure form pulled back through the compatibility operator. A Rayleigh--Ritz criterion then yields a critical threshold at which positivity and coercivity are lost. A minimal spherical example illustrates the corresponding regulated spectral shift. The framework contains fixed-boundary, natural-boundary and classical free-boundary problems as limiting cases, while extending stationarity to regulated bulk--boundary exchange classes.

physics.class-ph

Wilson-Fisher renormalization of discrete gravity-capillary wave turbulence in viscous fluids

We report an experimental realization of Wilson-Fisher renormalization in driven surface-wave turbulence across Newtonian fluids spanning nearly six decades in Raynolds number. Discrete capillary and gravity turbulence define two universality classes selected by interaction topology: triadic resonances for capillary waves and effectively tetradic scattering for gravity waves. Navier-Stokes viscosity is the relevant perturbation that renormalizes spectral transfer and terminates the cascade. The resulting framework predicts the Kolmogorov cutoff from the balance of nonlinear transfer and viscous damping, and Reynolds scaling of the integrated inertial spectral weight. Laser Doppler Vibrometry quantitatively confirms these renormalized scaling laws, establishing discrete gravity-capillary turbulence as a tunable laboratory for nonequilibrium crossoever criticality.

physics.flu-dyn

Active Force Dynamics in Red Blood Cells Under Non-Invasive Optical Tweezers

Red blood cells (RBCs) sustain mechanical stresses associated with microcirculatory flow through ATP-driven plasma membrane flickering. This is an active phenomenon driven by motor proteins that regulate interactions between the spectrin cytoskeleton and the lipid bilayer; it is manifested in RBC shape fluctuations reflecting the cell's mechanical and metabolic state. Yet, direct quantification of the forces and energetic costs underlying this non-equilibrium behavior remains challenging due to the invasiveness of existing techniques. Here, a minimally invasive method that combines bead-free, low-power optical tweezers with high-speed video microscopy was employed to track local membrane forces and displacements in single RBCs during the same time window. This independent dual-channel measurement enabled the construction of a mechano-dynamic phase space for RBCs under different chemical treatments, that allowed for differentiating between metabolic and structural states based on their fluctuation-force signatures. Quantification of mechanical work during flickering demonstrated that membrane softening enhanced fluctuations while elevating energy dissipation. The proposed optical tweezers methodology provides a robust framework for mapping the active mechanics of living cells, enabling precise probing of cellular physiology and detection of biomechanical dysfunction in diseases.

physics.bio-ph

Active Extensile Hydrogels Actuated by Living Polymers of the Bacterial Cytokinetic Protein FtsZ

Active materials capable of autonomously modulating their mechanical properties are foundational to the development of next-generation soft technologies. Here, we introduce a novel class of extensible biohybrid hydrogels powered by living polymers of the bacterial cytokinetic protein FtsZ. When embedded within a polyacrylamide (PA) matrix, GTP-fueled FtsZ filaments self-organize into treadmilling structures that generate internal extensible stresses, driving reversible softening, swelling, and fluidization of the composite FtsZ-PA hydrogel network. Unlike conventional contractile biopolymer systems, these hybrid gels exhibit stress-induced softening, yield under minimal deformation, and suppress thermal flow barriers-hallmarks of dissipative, extensile metamaterials. Microscopic particle tracking reveals active non-Gaussian fluctuations, while bulk rheology confirms programmable, concentration-dependent reductions in both stiffness and viscosity. Theoretical modeling shows that internal filament activity gives rise to a negative mechanical permittivity, establishing a new paradigm in materials science in which embedded FtsZ living polymers dynamically program active matter mechanics from within. These findings open new avenues for the design of modular, reconfigurable systems in adaptive biomaterials, soft robotics, and synthetic active matter.

cond-mat.soft

Stochastic motility energetics reveals cooperative bacterial swarming in optical tweezers

Bacterial flagellar swarming enables dense microbial populations to migrate collectively across surfaces, often resulting in emergent, coordinated behaviors. However, probing the underlying energetics of swarming at the single cluster level remains a challenge. Here, we combine optical tweezers and multiparticle tracking within a stochastic thermodynamic framework to characterize the active motility of confined Proteus mirabilis clusters. Using the Photon Momentum Method to directly measure trapping forces, we show that swarming clusters generate persistent, dissipative flows indicative of non equilibrium stationary motility within confined solenoidal mesostructures. These flagellar rotational dynamics break detailed balance in mesoscopic force space and exceed the limits of passive friction, as evidenced by force velocity correlations and vortex like circulations. By coarse graining cluster trajectories into an active Brownian phase space, we quantify the work performed by bacterial swarms at cooperative coupling to thermal fluctuations, resulting in dissipative Ohmic like currents overcoming conservative trapping. Our findings establish a generalizable approach to quantify collective motility and energetic dissipation in active bacterial clusters, offering new insights into the physical principles governing microbial cooperativity.

physics.bio-ph

Collective lattice excitations in the dynamic route for melting hydrodynamic 2D-crystals

Surface stiffnesses engender steady patterns of Faraday waves (FWs), so called hydrodynamic crystals as correspond to ordered wave lattices made of discrete subharmonics under monochromatic driving. Mastering rules are both inertia-imposed parametric resonance for frequency-halving together with rigidity-driven nonlinearity for wavefield self-focusing. They harness the discretization needed for coherent FW-packets to localize in space and time. Collective lattice excitations are observed as dispersionless propagating dislocations that lead periodic modulations arising from explicit symmetry breaking. In a field theory perspective, a halving genesis for the collective distorting modes is revealed as the natural pathway for hydrodynamic crystal melting.

nlin.PS

Optical control of spatially localized red blood cell activity by holographic tweezing

Red blood cells possess unique biomechanical ability to squeeze through capillaries smaller than their size to enable gas and ion exchange. A key signature of their active biomechanics is the out-of-equilibrium fluctuation of the plasma membrane, also known as flickering motion. This active flickering is driven by motor proteins that connect the forces between the spectrin skeleton and the lipid bilayer. However, studying flickering motions in living red blood cells is challenging without altering their physical properties. Here, we implemented a holographic optical tweezer that sculpted a laser beam to create a force field distributed directly along the membrane equatorial contour. We show heterogeneous membrane flickering activity driven by membrane kickers in free-standing cells. Then we inhibited the active kickers by optical forces under minimal invasion, thus benchmarking the active motion against thermal fluctuations. Our work paves the way for optical control of biophysical forces, providing touchless strategies for mechanotransduction in living cells.

physics.bio-ph

Rheology of Pseudomonas fluorescens biofilms: from experiments to predictive DPD mesoscopic modelling

Bacterial biofilms mechanically behave as viscoelastic media consisting of micron-sized bacteria crosslinked to a selfproduced network of extracellular polymeric substances (EPS) embedded in water. Structural principles for numerical modelling aim at describing mesoscopic viscoelasticity without loosing detail on the underlying interactions existing in wide regimes of deformation under hydrodynamic stress. Here we approach the computational challenge to model bacterial biofilms for predictive mechanics in silico under variable stress conditions. Up-to-date models are not entirely satisfactory due to the plethora of parameters required to make them functioning under the effects of stress. As guided by the structural depiction gained in a previous work with Pseudomonas fluorescens (Jara et al. Front. Microbiol. (2021)), we propose a mechanical modeling by means of Dissipative Particle Dynamics (DPD), which captures the essentials of the topological and compositional interactions between bacteria particles and crosslinked EPS-embedding under imposed shear. The P. fluorescens biofilms have been modeled under mechanical stress mimicking shear stresses as undergone in vitro. The predictive capacity for mechanical features in DPD-simulated biofilms has been investigated by varying the externally imposed field of shear strain at variable amplitude and frequency. The parametric map of essential biofilm ingredients has been explored by making the rheological responses to emerge among conservative mesoscopic interactions and frictional dissipation in the underlying microscale. The proposed coarse grained DPD simulation qualitatively catches the rheology of the P. fluorescens biofilm over several decades of dynamic scaling.

cond-mat.soft

Rheology of Pseudomonas fluorescens biofilms: from experiments to DPD mesoscopic modelling

The presence of bacterial biofilms in clinical and industrial settings is a major issue worldwide. A biofilm is a viscoelastic matrix, composed of bacteria producing a network of Extracellular Polymeric Substances (EPS) to which bacteria crosslink. Modelling of complex biofilms is relevant to provide accurate descriptions and predictions that include parameters as hydrodynamics, dynamics of the bacterial population and solute mass transport. However, up-to-date numerical modelling, even at a coarse-grained level, is not satisfactorily. In this work, we present a numerical coarse-grain model of a bacterial biofilm, consisting of bacteria immersed in an aqueous matrix of a polymer network, that allows to study rheological properties of a biofilm. We study its viscoelastic modulus, varying topology and composition (such as the number of crosslinks between EPS polymers, the number of bacteria and the amount of solvent), and compare the numerical results with experimental rheological data of Pseudomonas fluorescens biofilms grown under static and shaking conditions, as previously described by Jara et al, Frontiers in Microbiology (2021).

cond-mat.soft

Moulding hydrodynamic 2D-crystals upon parametric Faraday waves in shear-functionalized water surfaces

Faraday waves (FWs), or surface waves oscillating at half of the natural frequency when a liquid is vertically vibrated, are archetypes of ordering transitions on liquid surfaces. The existence of unbounded FW-patterns sustained upon bulk frictional stresses has been evidenced in highly viscous fluids. However, the role of surface rigidity has not been investigated so far. Here, we demonstrate that dynamically frozen FWs that we call 2D-hydrodynamic crystals do appear as ordered patterns of nonlinear surface modes in water surfaces functionalized with soluble (bio)surfactants endowing in-plane shear stiffness. The strong phase coherence in conjunction with the increased surface rigidity bear the FW-ordering transition, upon which the hydrodynamic crystals were reversibly molded by parametric control of their degree of order. Crystal symmetry and unit cell size were tuned depending on the FW-dispersion regime. The hydrodynamic crystals here discovered could be exploited in touchless strategies of soft matter scaffolding. Particularly, the surface-directed synthesis of structured materials based on colloids or polymers and cell culture patterns for tissue engineering could be ameliorated under external control of FW-coherence

cond-mat.soft

Phase-space dynamics of minimal Canham-Helfrich cells

The dynamical phase-space of axisymmetric Canham-Helfrich (CH) cells is constructed from a Hamiltonian field recapitulating membrane curvature-elasticity and systemic restrictions. Guiding principles are reparametrization to convert a static geometric system into a dynamical system, and Galilean transformation, to build a transformed Lagrangian invariant with respect to the action described by the CH free-energy. Building on the fluidity postulate, this Lagrangian describes the cellular membrane as an inverted harmonic oscillator driven by bending elasticity and effective friction governed by Gaussian curvature. To close the spring-mass interaction, we explicit the mass of the membrane and establish a dimensionally-minimal Lagrangian. Then, the canonical Hamiltonian is constructed in generalized coordinates $H(p, q, t)$, and the equations of motion derived in accordance with the principle of minimal action. The derived phase-space is used as a global predictor of the cellular shapes for different mechanical settings with a biological significance.

physics.bio-ph