arXiv subjects

Francisco Yubero

Publications and source records attributed to Francisco Yubero.

3 recordsLinked to original sources

arXiv2026

Polarization-Multiplexed Bloch Surface Wave Sensing of Single-Strand DNA Growth

Refractometric biosensing is a vital label-free tool for the real time detection and interaction analysis of biological and chemical substances. Nanophotonic platforms like Surface Plasmon Resonance (SPR) have played a critical role in providing refractometric sensing capabilities for clinical diagnostics and environmental monitoring. However, traditional systems operating in a single-polarization state cannot fully characterize complex optical properties such as birefringence, which is crucial to resolve many complex biological interactions. Although Bloch Surface Wave (BSW) sensors can support both TE and TM modes, a key capability SPR lacks, they have historically been implemented in single-mode configurations. In this paper, we present a polarization multiplexed BSW refractometric sensing system, simultaneously tracking the resonant wavelength shifts of both TE and TM BSW modes through time. Our technique was applied to investigate single-strand DNA growth during rolling circle amplification (RCA). To accurately recover the time-dependent birefringence, capturing dynamics of the DNA growth and orientation of its chains, we implemented a two-stage modeling approach based on the TMM. First, we utilized a wavelength-dependent surface sensitivity model, confining refractive index changes to the immediate layer above the crystal, to distinguish isotropic background dynamics from birefringent signals. Following the onset of RCA, we transitioned to a model that accounted for the vertical growth of the DNA layers in time. By fitting this model to the TE and TM resonant shifts, we monitor the growth rate of the single-strand DNA layer as well as the refractive index along the two polarization components. Our findings demonstrate the platform's ability to resolve the structural evolution of complex bimolecular interactions associated with conformational changes.

physics.optics↗

arXiv2025

Ion mobility and segregation in seed surfaces subjected to cold plasma treatments

Plasma treatment of seeds is an efficient procedure to accelerate germination, to improve initial stages of plant growth and for protection against pathogens infection. Most studies relate these beneficial effects with biochemical modifications affecting the metabolism and genetical growth factors of seeds and young plants. Using barley seeds, in this work we investigate the redistribution of ions in the seed surface upon their treatment with cold air plasmas. In addition, we investigate the effect of plasma in the lixiviation of ions through the seeds hull when they are immersed in water. Ions re-distribution in the outer layers of air plasma treated seeds has been experimentally determined through X-ray Photoelectron Spectroscopy analysis in combination with chemical in-depth profiling with gas cluster ion beams. The results show that in the shallowest layers of the seed hull (at least up to a depth of 100 nm) there is an enrichment of K+ and Ca2+ ions, in addition to changes in the O/C and N/C atomic ratios. These data have been confirmed with the electron microscopy/fluorescence analysis of seed cuts. Observations have been accounted for by a Monte Carlo model simulating the electrostatic interactions that develop between the negative charge accumulated at the seed surface due to the interaction with the plasma sheath and the positive ions existing in the interior of seeds. Furthermore, it is shown that upon water immersion of plasma treated seeds mobilized ions tend to lixiviate more efficiently than in pristine seeds. The detection of a significant concentration of NO3- anions in the water has been attributed to a secondary reaction of nitrogen species incorporated into the seeds during plasma exposure with reactive oxygen species formed on their surface during this treatment. The implications of these findings for the improvement of germination capacity of seeds are discussed.

physics.bio-ph↗

arXiv2021

One-reactor vacuum and plasma synthesis of transparent conducting oxide nanotubes and nanotrees: from single wire conductivity to ultra-broadband perfect absorbers in the NIR

The eventual exploitation of one-dimensional nanomaterials yet needs the development of scalable, high yield, homogeneous, and environmentally friendly methods able to meet the requirements for the fabrication of under design functional nanomaterials. In this article, we demonstrate a vacuum and plasma one-reactor approach for the synthesis of the fundamental common element in solar energy and optoelectronics, i.e. the transparent conducting electrode but in the form of nanotubes and nanotrees architectures. Although the process is generic and can be used for a variety of TCOs and wide-bandgap semiconductors, we focus herein on Indium Doped Tin Oxide (ITO) as the most extended in the previous applications. This protocol combines widely applied deposition techniques such as thermal evaporation for the formation of organic nanowires serving as 1D and 3D soft templates, deposition of polycrystalline layers by magnetron sputtering, and removal of the template by simply annealing under mild vacuum conditions. The process variables are tuned to control the stoichiometry, morphology, and alignment of the ITO nanotubes and nanotrees. Four-probe characterization reveals the improved lateral connectivity of the ITO nanotrees and applied on individual nanotubes shows resistivities as low as 3.5 +/- 0.9 x 10-4 Ω.cm, a value comparable to single-crystalline counterparts. The assessment of diffuse reflectance and transmittance in the UV-VIS range confirms the viability of the supported ITO nanotubes as a random optical media working as strong scattering layers. Further ability to form ITO nanotrees opens the path for practical applications as ultra-broadband absorbers in the NIR. The demonstrated low resistivity and optical properties of these ITO nanostructures open the way for their use in LEDs, IR shield, energy harvesting, nanosensors, and photoelectrochemical applications

physics.app-ph↗