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Francisco de los Santos

Publications and source records attributed to Francisco de los Santos.

14 recordsLinked to original sources

The Franzese-Stanley Coarse Grained Model for Hydration Water

Water modeling is a challenging problem. Its anomalies are difficult to reproduce, promoting the proliferation of a large number of computational models, among which researchers select the most appropriate for the property they study. In this chapter, we introduce a coarse-grained model introduced by Franzese and Stanley (FS) that accounts for the many-body interactions of water. We review mean-field calculations and Monte Carlo simulations on water monolayers for a wide range of pressures and temperatures, including extreme conditions. The results show the presence of two dynamic crossovers and explain the origin of diffusion anomalies. Moreover, the model shows that all the different scenarios, proposed in the last decades as alternative explanations of the experimental anomalies of water, can be related by the fine-tuning of the many-body (cooperative) interaction. Once this parameter is set from the experiments, the FS model predicts a phase transition between two liquids with different densities and energies in the supercooled water region, ending in a liquid-liquid critical point. From this critical point stems a liquid-liquid Widom line, i.e., the locus of maxima of the water correlation length, that in the FS model can be directly calculated. The results are consistent with the extrapolations from experiments. Furthermore, they agree with those from atomistic models but make predictions over a much wider thermodynamic region, allowing for a better interpretation of the available experimental data. All these findings provide a coherent picture of the properties of water and confirm the validity of the FS model that has proved to be useful for large-scale simulations of biological systems.

cond-mat.stat-mech↗

Fractional revivals through Rényi uncertainty relations

We show that the Rényi uncertainty relations give a good description of the dynamical behavior of wave packets and constitute a sound approach to revival phenomena by analyzing three model systems: the simple harmonic oscillator, the infinite square well, and the quantum bouncer. We prove the usefulness of entropic uncertainty relations as a tool for identifying fractional revivals by providing a comparison in different contexts with the usual Heisenberg uncertainty relation and with the common approach in terms of the autocorrelation function.

quant-ph↗

Revival times at quantum phase transitions

The concept of quantum revivals is extended to many-body systems and the implications of traversing a quantum phase transition are explored. By analyzing two different models, the vibron model for the bending of polyatomic molecules and the Dicke model for a quantum radiation field interacting with a system of two-level atoms, we show evidence of revival behavior for wave packets centered around energy levels as low as the fundamental state. Away from criticality, revival times exhibit smooth, nonsingular behavior, and are proportional to the system size. Upon approaching a quantum critical point, they diverge as a power law and scale with the system size, although the scaling is no longer linear.

quant-ph↗

Relations between the diffusion anomaly and cooperative rearranging regions in a hydrophobically nanoconfined water monolayer

We simulate liquid water between hydrophobic walls separated by 0.5 nm, to study how the diffusion constant D_\parallel parallel to the walls depends on the microscopic structure of water. At low temperature T, water diffusion can be associated with the number of defects in the hydrogen bonds network. However, the number of defects solely does not account for the peculiar diffusion of water, with maxima and minima along isotherms. Here, we calculate a relation that quantitatively reproduces the behavior of D_\parallel, focusing on the high-T regime. We clarify how the interplay between breaking of hydrogen bonds and cooperative rearranging regions of 1-nm size gives rise to the diffusion extrema, possibly relevant for both bulk and nanoconfined water.

cond-mat.soft↗

Understanding diffusion and density anomaly in a coarse-grained model for water confined between hydrophobic walls

We study, by Monte Carlo simulations, a coarse-grained model of a water monolayer between hydrophobic walls at partial hydration, with a wall-to-wall distance of about 0.5 nm. We analyze how the diffusion constant parallel to the walls, $D_{\parallel}$, changes and correlates to the phase diagram of the system. We find a locus of $D_{\parallel}$ maxima and a locus of $D_{\parallel}$ minima along isotherms, with lines of constant $D_{\parallel}$ resembling the melting line of bulk water. The two loci of $D_{\parallel}$ extrema envelope the line of temperatures of density maxima at constant $P$. We show how these loci are related to the anomalous volume behavior due to the hydrogen bonds. At much lower $T$, confined water becomes subdiffusive, and we discuss how this behavior is a consequence of the increased correlations among water molecules when the hydrogen bond network develops. Within the subdiffusive region, although translations are largely hampered, we observe that the hydrogen bond network can equilibrate and its rearrangement is responsible for the appearance of density minima along isobars. We clarify that the minima are not necessarily related to the saturation of the hydrogen bond network.

cond-mat.soft↗

Renormalisation group determination of the order of the DNA denaturation transition

We report on the nature of the thermal denaturation transition of homogeneous DNA as determined from a renormalisation group analysis of the Peyrard-Bishop-Dauxois model. Our approach is based on an analogy with the phenomenon of critical wetting that goes further than previous qualitative comparisons, and shows that the transition is continuous for the average base-pair separation. However, since the range of universal critical behaviour appears to be very narrow, numerically observed denaturation transitions may look first-order, as it has been reported in the literature.

cond-mat.stat-mech↗

Revivals, classical periodicity, and zitterbewegung of electron currents in monolayer graphene

Revivals of electric current in graphene in the presence of an external magnetic field are described. It is shown that when the electrons are prepared in the form of wave packets assuming a Gaussian population of only positive (or negative) energy Landau levels, the presence of the magnetic field induce revivals of the electron currents, besides the classical cyclotron motion. When the population comprises both positive and negative energy Landau levels, revivals of the electric current manifest simultaneously with zitterbewegung and the classical cyclotron motion. We relate the temporal scales of these three effects and discuss to what extent these results hold for real graphene samples.

quant-ph↗

Dynamically Slow Processes in Supercooled Water Confined Between Hydrophobic Plates

We study the dynamics of water confined between hydrophobic flat surfaces at low temperature. At different pressures, we observe different behaviors that we understand in terms of the hydrogen bonds dynamics. At high pressure, the formation of the open structure of the hydrogen bond network is inhibited and the surfaces can be rapidly dehydrated by decreasing the temperature. At lower pressure the rapid ordering of the hydrogen bonds generates heterogeneities that are responsible for strong non-exponential behavior of the correlation function, but with no strong increase of the correlation time. At very low pressures, the gradual formation of the hydrogen bond network is responsible for the large increase of the correlation time and, eventually, the dynamical arrest of the system and of the dehydration process.

cond-mat.soft↗

Simplified Langevin approach to the Peyrard-Bishop-Dauxois model of DNA

A simple Langevin approach is used to study stationary properties of the Peyrard-Bishop-Dauxois model for DNA, allowing known properties to be recovered in an easy way. Results are shown for the denaturation transition in homogeneous samples, for which some implications, so far overlooked, of an analogy with equilibrium wetting transitions are highlighted. This analogy implies that the order-parameter, asymptotically, exhibits a second order transition even if it may be very abrupt for non-zero values of the stiffness parameter. Not surprisingly, we also find that for heterogeneous DNA, within this model the largest bubbles in the pre-melting stage appear in adenine-thymine rich regions, while we suggest the possibility of some sort of not strictly local effects owing to the merging of bubbles.

cond-mat.soft↗

Critical wetting of a class of nonequilibrium interfaces: A computer simulation study

Critical wetting transitions under nonequilibrium conditions are studied numerically and analytically by means of an interface-displacement model defined by a Kardar-Parisi-Zhang equation, plus some extra terms representing a limiting, short-ranged attractive wall. Its critical behavior is characterized in detail by providing a set of exponents for both the average height and the surface order-parameter in one dimension. The emerging picture is qualitatively and quantitatively different from recently reported mean-field predictions for the same problem. Evidence is shown that the presence of the attractive wall induces an anomalous scaling of the interface local slopes.

cond-mat.stat-mech↗

Kardar-Parisi-Zhang interfaces bounded by long-ranged potentials

We study unbinding transitions of a non-equilibrium Kardar-Parisi-Zhang (KPZ) interface in the presence of long-ranged substrates. Both attractive and repulsive substrates, as well as positive and negative Kardar-Parisi-Zhang nonlinearities, are considered, leading to four different physical situations. A detailed comparison with equilibrium wetting transitions as well as with non-equilibrium unbinding transitions in systems with short-ranged forces is presented, yielding a comprehensive picture of unbinding transitions, and of their classification into universality classes. These non-equilibrium transitions may play a crucial role in the dynamics of wetting or growth of systems with intrinsic anisotropies.

cond-mat.stat-mech↗

Non-order parameter Langevin equation for a bounded Kardar-Parisi-Zhang universality class

We introduce a Langevin equation describing the pinning-depinning phase transition experienced by Kardar-Parisi-Zhang interfaces in the presence of a bounding ``lower-wall''. This provides a continuous description for this universality class, complementary to the different and already well documented one for the case of an ``upper-wall''. The Langevin equation is written in terms of a field that is not an order-parameter, in contrast to standard approaches, and is studied both by employing a systematic mean-field approximation and by means of a recently introduced efficient integration scheme. Our findings are in good agreement with known results from microscopic models in this class, while the numerical precision is improved. This Langevin equation constitutes a sound starting point for further analytical calculations, beyond mean-field, needed to shed more light on this poorly understood universality class.

cond-mat.stat-mech↗

Bulk dynamics for interfacial growth models

We study the influence of the bulk dynamics of a growing cluster of particles on the properties of its interface. First, we define a {\it general bulk growth model} by means of a continuum Master equation for the evolution of the bulk density field. This general model just considers arbitrary addition of particles (though it can be easily generalized to consider substraction) with no other physical restriction. The corresponding Langevin equation for this bulk density field is derived where the influence of the bulk dynamics is explicitly shown. Finally, when it is assumed a well-defined interface for the growing cluster, the Langevin equation for the height field of this interface for some particular bulk dynamics is written. In particular, we obtain the celebrated Kardar-Parisi-Zhang (KPZ) equation. A Monte Carlo simulation illustrates the theoretical results.

cond-mat.stat-mech↗