arXiv subjects

Franz Pfeiffer

Publications and source records attributed to Franz Pfeiffer.

At least 19 recordsLinked to original sources

arXiv2026

Characterizing an inverse Compton X-ray source and determining its electron beam parameters using a genetic algorithm

Inverse Compton X-ray sources are laboratory-scale devices providing quasi-monochromatic synchrotron radiation which is generated by laser photons Compton-scattering off highly relativistic electrons. Since the shape and width of the X-ray spectrum are determined by the properties of the colliding beams, these must be carefully optimised. However, device compactness limits the space for diagnostics, rendering a complete characterisation challenging, especially if an electron storage ring is combined with a laser enhancement cavity. Here, a framework for laser, electron and X-ray beam parameter determination is proposed to address this issue. First, methods for determining the laser- and X-ray parameters are presented. Knowing these, electron beam parameters are retrieved from the shape of the X-ray spectrum. To this end, an analytical physical model enabling a rapid calculation of inverse Compton scattering spectra is developed and combined with a genetic algorithm. This strategy's effectiveness is demonstrated by applying the concept at the Munich Compact Light Source, a storage ring-based inverse Compton X-ray source facility. Since the analytical model is computationally very inexpensive, the proposed framework could enable real-time monitoring of inverse Compton X-ray sources or be used as a non-invasive diagnostic based on a single spectrum for the electron beam emittance of storage rings or accelerators.

physics.acc-ph↗

arXiv2026

X-ray dark-field imaging from intensity flow: A Fokker-Planck approach to grating interferometry

Grating interferometry is a promising diagnostic technique that enables simultaneous acquisition of three complementary, synergistic X-ray images: transmission, differential phase, and dark-field. Its key advantage over other setups is its ability to use large pixels and, hence, large-area detectors, as well as its compatibility with low-coherence, compact X-ray sources, both of which are key factors for human-scale imaging. It has already demonstrated strong potential for chest imaging applications, including the diagnosis of pulmonary emphysema, fibrosis, and cancer. To retrieve transmission, differential phase, and dark-field images from data, an algorithm is required to separate the distinct mechanisms contributing to measured contrast. Since its realization, this image-retrieval step has remained fundamentally unchanged. In this work, we develop a novel transmission- and dark-field retrieval algorithm for grating-interferometry derived from the X-ray Fokker-Planck equation. To demonstrate and validate our Fokker-Planck algorithm, we apply it to experimental measurements of a test sample and to data from a mouse chest acquired with varying exposure times and added Poisson noise. The retrieved images were qualitatively and quantitatively compared with those retrieved using a conventional sinusoidal-fitting approach. Across both samples, the Fokker--Planck method produced images consistent with conventional retrieval, with a comparable signal-to-noise ratio. Notably, our Fokker-Planck method suppresses artefacts arising in the conventional approach under grating perturbations (e.g., structural defects like scratches) and reduced flux or visibility, yielding smoother and more reproducible images. Additionally, we demonstrate that our Fokker-Planck method has an advantage over the conventional dark-field retrieval method for fast sample imaging with short exposure times and high noise.

physics.med-ph↗

arXiv2026

Neighbor2Inverse: Self-Supervised Denoising for Low-Dose Region-of-Interest Phase Contrast CT

Propagation-based X-ray phase-contrast imaging (PBI) enables high-contrast visualization of lung structures and holds strong medical potential. However, safe translation to the clinic will require a substantial radiation dose reduction, which inevitably increases image noise. Supervised convolutional-neural-network-based denoising can restore image quality but depends on paired low- and high-dose datasets, which are rarely available in practice. Self-supervised methods avoid this limitation, yet most are not well adapted to the inverse problem of PBI computed tomography (CT). We introduce Neighbor2Inverse, a self-supervised denoising framework designed for low-dose PBI-CT that generalizes to clinical CT. Building on the Neighbor2Neighbor principle, each noisy projection is subsampled into two variants that preserve structural information but contain independent noise realizations. These are reconstructed separately, and the resulting pairs are used to train a denoising network directly in the image domain. We benchmark the proposed method against established analytical and self-supervised denoising approaches. In region-of-interest PBI CT experiments, Neighbor2Inverse achieves superior noise suppression while preserving fine structural details, as demonstrated by improved contrast-to-noise ratio, spatial resolution, and composite image quality metrics. Competitive performance is also observed on clinical CT data under simulated low-dose conditions. This work has been submitted to the IEEE for possible publication. Copyright may be transferred without notice, after which this version may no longer be accessible. Code, data, and interactive figures are available at https://github.com/J-3TO/Neighbor2Inverse.

cs.CV↗

arXiv2026

Super-Resolution Structured-Illumination X-Ray Microscopy based on Fourier Decomposition

X-ray microscopy has become an important tool for non-destructive testing, e.g., in battery research. However, imaging a cm-scale battery cell at the desired (sub-)micrometer resolution has been challenging. State-of-the-art X-ray microscopy techniques with a suited field-of-view provide (sub-) $10\,\mu m$ resolution, typically limited by the detector point-spread function and the (effective) detector pixel size. This work presents a super-resolution X-ray microscopy approach overcoming both limitations. It requires a structured X-ray illumination to encode high-frequency sample information that is natively unresolved within the resolved region of support. A mathematical framework is developed that decodes this information and generates a super-resolved image from multiple acquisitions with different phase shifts of the structured X-ray illumination. The presence of this encoded high-frequency information is first experimentally demonstrated, followed by quantification and validation using a resolution test chart. A resolution improvement by a factor of 2.2 is shown. Finally, we extend the proposed super-resolution technique to X-ray microtomography. Since the image acquisition scheme is inherently multimodal, phase-contrast and dark-field X-ray images can be computed additionally. These results showcase the direct impact of the proposed technique across both non-destructive testing and biomedical imaging, alleviating pixel-size limitations in detectors and sample-size restrictions.

physics.optics↗

arXiv2026

Artifact Reduction in Undersampled 3D Cone-Beam CTs using a Hybrid 2D-3D CNN Framework

Undersampled CT volumes minimize acquisition time and radiation exposure but introduce artifacts degrading image quality and diagnostic utility. Reducing these artifacts is critical for high-quality imaging. We propose a computationally efficient hybrid deep-learning framework that combines the strengths of 2D and 3D models. First, a 2D U-Net operates on individual slices of undersampled CT volumes to extract feature maps. These slice-wise feature maps are then stacked across the volume and used as input to a 3D decoder, which utilizes contextual information across slices to predict an artifact-free 3D CT volume. The proposed two-stage approach balances the computational efficiency of 2D processing with the volumetric consistency provided by 3D modeling. The results show substantial improvements in inter-slice consistency in coronal and sagittal direction with low computational overhead. This hybrid framework presents a robust and efficient solution for high-quality 3D CT image post-processing. The code of this project can be found on github: https://github.com/J-3TO/2D-3DCNN_sparseview/.

cs.CV↗

arXiv2026

Uncertainty-guided Generation of Dark-field Radiographs

X-ray dark-field radiography provides complementary diagnostic information to conventional attenuation imaging by visualizing microstructural tissue changes through small-angle scattering. However, the limited availability of such data poses challenges for developing robust deep learning models. In this work, we present the first framework for generating dark-field images directly from standard attenuation chest X-rays using an Uncertainty-Guided Progressive Generative Adversarial Network. The model incorporates both aleatoric and epistemic uncertainty to improve interpretability and reliability. Experiments demonstrate high structural fidelity of the generated images, with consistent improvement of quantitative metrics across stages. Furthermore, out-of-distribution evaluation confirms that the proposed model generalizes well. Our results indicate that uncertainty-guided generative modeling enables realistic dark-field image synthesis and provides a reliable foundation for future clinical applications.

cs.LG↗

arXiv2025

Beam Geometry and Input Dimensionality: Impact on Sparse-Sampling Artifact Correction for Clinical CT with U-Nets

This study aims to investigate the effect of various beam geometries and dimensions of input data on the sparse-sampling streak artifact correction task with U-Nets for clinical CT scans as a means of incorporating the volumetric context into artifact reduction tasks to improve model performance. A total of 22 subjects were retrospectively selected (01.2016-12.2018) from the Technical University of Munich's research hospital, TUM Klinikum rechts der Isar. Sparsely-sampled CT volumes were simulated with the Astra toolbox for parallel, fan, and cone beam geometries. 2048 views were taken as full-view scans. 2D and 3D U-Nets were trained and validated on 14, and tested on 8 subjects, respectively. For the dimensionality study, in addition to the 512x512 2D CT images, the CT scans were further pre-processed to generate a so-called '2.5D', and 3D data: Each CT volume was divided into 64x64x64 voxel blocks. The 3D data refers to individual 64-voxel blocks. An axial, coronal, and sagittal cut through the center of each block resulted in three 64x64 2D patches that were rearranged as a single 64x64x3 image, proposed as 2.5D data. Model performance was assessed with the mean squared error (MSE) and structural similarity index measure (SSIM). For all geometries, the 2D U-Net trained on axial 2D slices results in the best MSE and SSIM values, outperforming the 2.5D and 3D input data dimensions.

cs.CV↗

arXiv2025

Technical Note: Low-Dose Simulation for Grating-Based X-Ray Dark-Field Radiography Using a Virtually Decreased Irradiation Area

Background: X-ray dark-field radiography uses small-angle scattering to visualize the structural integrity of lung alveoli. To study the influence of dose reduction on clinical dark-field radiographs, one can simulate low-dose images by virtually reducing the irradiated area. However, these simulations can exhibit stripe artifacts. Purpose: Validation of the low-dose simulation algorithm reported by Schick & Bast et al., PLoS ONE, 2024. Furthermore, we want to demonstrate that stripe artifacts observed in simulated images at very low-dose levels are introduced by limitations of the algorithm and would not appear in actual low-dose dark-field images. Methods: Dark-field radiographs of an anthropomorphic chest phantom were acquired at different tube currents equaling different radiation doses. Based on the measurement with a high radiation dose, dark-field radiographs corresponding to lower radiation doses were simulated by virtually reducing the irradiated area. The simulated low-dose radiographs were evaluated by a quantitative comparison of the dark-field signal using different regions of interests. Results: Dark-field radiographs acquired at one quarter of the standard dose were artifact-free. The dark-field signal differed from the simulated radiographs by up to 10%. Algorithm-induced stripe artifacts decrease the image quality of the simulated radiographs. Conclusions: Virtually reducing the irradiation area is a simple approach to generate low-dose radiographs based on images acquired with scanning-based dark-field radiography. However, as the algorithm creates stripe artifacts in the dark-field images, particularly at higher dose reductions, that are not present in measured low-dose images, simulated images have reduced image quality compared to their measured counterparts.

physics.med-ph↗

arXiv2025

Beam Hardening Correction in Clinical X-ray Dark-Field Chest Radiography using Deep Learning-Based Bone Segmentation

Dark-field radiography is a novel X-ray imaging modality that enables complementary diagnostic information by visualizing the microstructural properties of lung tissue. Implemented via a Talbot-Lau interferometer integrated into a conventional X-ray system, it allows simultaneous acquisition of perfectly temporally and spatially registered attenuation-based conventional and dark-field radiographs. Recent clinical studies have demonstrated that dark-field radiography outperforms conventional radiography in diagnosing and staging pulmonary diseases. However, the polychromatic nature of medical X-ray sources leads to beam-hardening, which introduces structured artifacts in the dark-field radiographs, particularly from osseous structures. This so-called beam-hardening-induced dark-field signal is an artificial dark-field signal and causes undesired cross-talk between attenuation and dark-field channels. This work presents a segmentation-based beam-hardening correction method using deep learning to segment ribs and clavicles. Attenuation contribution masks derived from dual-layer detector computed tomography data, decomposed into aluminum and water, were used to refine the material distribution estimation. The method was evaluated both qualitatively and quantitatively on clinical data from healthy subjects and patients with chronic obstructive pulmonary disease and COVID-19. The proposed approach reduces bone-induced artifacts and improves the homogeneity of the lung dark-field signal, supporting more reliable visual and quantitative assessment in clinical dark-field chest radiography.

physics.med-ph↗

arXiv2025

Look-Up Table-Correction for Beam Hardening-Induced Signal of Clinical Dark-Field Chest Radiographs

Background: Material structures at the micrometer scale cause ultra-small-angle X-ray scattering, e.g., seen in lung tissue or plastic foams. In grating-based X-ray imaging, this causes a reduction of the fringe visibility, forming a dark-field signal. Polychromatic beam hardening also changes visibility, adding a false dark-field signal due to attenuation, even in homogeneous, non-scattering materials. Purpose: The objective of this study is to develop a fast, simple, and robust method to correct dark-field signals and bony structures present due to beam hardening on dark-field chest radiographs of study participants. Methods: The method is based on calibration measurements and image processing. Beam hardening by bones and soft tissue is modeled by aluminum and water, respectively, which have no microstructure and thus only generate an artificial dark-field signal. Look-up tables were then created for both. By using a weighted mean of these, forming a single look-up table, and using the attenuation images, the artificial dark-field signal and thus the bone structures present are reduced for study participants. Results: It was found that applying a correction using a weighted look-up table leads to a significant reduction of bone structures in the dark-field image. The weighting of the aluminum component has a substantial impact on the degree to which bone structures remain visible in the dark-field image. Furthermore, a large negative bias in the dark-field image, dependent on the aluminum weighting, was successfully corrected. Conclusions: The beam-hardening-induced signal in the dark-field images was successfully reduced using the method described. The choice of aluminum weighting to suppress rib structures, as well as the selection of bias correction, should be evaluated based on the specific clinical question.

physics.med-ph↗

arXiv2025

Deformable Image Registration of Dark-Field Chest Radiographs for Local Lung Signal Change Assessment

Dark-field radiography of the human chest has been demonstrated to have promising potential for the analysis of the lung microstructure and the diagnosis of respiratory diseases. However, previous studies of dark-field chest radiographs evaluated the lung signal only in the inspiratory breathing state. Our work aims to add a new perspective to these previous assessments by locally comparing dark-field lung information between different respiratory states. To this end, we discuss suitable image registration methods for dark-field chest radiographs to enable consistent spatial alignment of the lung in distinct breathing states. Utilizing full inspiration and expiration scans from a clinical chronic obstructive pulmonary disease study, we assess the performance of the proposed registration framework and outline applicable evaluation approaches. Our regional characterization of lung dark-field signal changes between the breathing states provides a proof-of-principle that dynamic radiography-based lung function assessment approaches may benefit from considering registered dark-field images in addition to standard plain chest radiographs.

eess.IV↗

arXiv2024

Influence of Medical Foreign Bodies on Dark-Field Chest Radiographs: First experiences

Objectives: Evaluating the effects and artifacts introduced by medical foreign bodies in clinical dark-field chest radiographs and assessing their influence on the evaluation of pulmonary tissue, compared to conventional radiographs. Material & Methods: This retrospective study analyzed data from subjects enrolled in clinical trials conducted between 2018 and 2021, focusing on chronic obstructive pulmonary disease (COPD) and COVID-19 patients. All patients obtained a radiograph using an in-house developed clinical prototype for grating-based dark-field chest radiography. The prototype simultaneously delivers a conventional and dark-field radiograph. Two radiologists independently assessed the clinical studies to identify patients with foreign bodies. Subsequently, an analysis was conducted on the effects and artifacts attributed to distinct foreign bodies and their impact on the assessment of pulmonary tissue. Results: Overall, 30 subjects with foreign bodies were included in this study (mean age, 64 years +/- 11 [standard deviation]; 15 men). Foreign bodies composed of materials lacking microstructure exhibited a diminished dark-field signal or no discernible signal. Foreign bodies with a microstructure, in our investigations the cementation of the kyphoplasty, produce a positive dark-field signal. Since most foreign bodies lack microstructural features, dark-field imaging revealed fewer signals and artifacts by foreign bodies compared to conventional radiographs. Conclusion: Dark-field radiography enhances the assessment of pulmonary tissue with overlaying foreign bodies compared to conventional radiography. Reduced interfering signals result in fewer overlapping radiopaque artifacts within the investigated regions. This mitigates the impact on image quality and interpretability of the radiographs and the projection-related limitations of radiography compared to CT.

physics.med-ph↗

arXiv2024

Towards AI Lesion Tracking in PET/CT Imaging: A Siamese-based CNN Pipeline applied on PSMA PET/CT Scans

Assessing tumor response to systemic therapies is one of the main applications of PET/CT. Routinely, only a small subset of index lesions out of multiple lesions is analyzed. However, this operator dependent selection may bias the results due to possible significant inter-metastatic heterogeneity of response to therapy. Automated, AI based approaches for lesion tracking hold promise in enabling the analysis of many more lesions and thus providing a better assessment of tumor response. This work introduces a Siamese CNN approach for lesion tracking between PET/CT scans. Our approach is applied on the laborious task of tracking a high number of bone lesions in full-body baseline and follow-up [68Ga]Ga- or [18F]F-PSMA PET/CT scans after two cycles of [177Lu]Lu-PSMA therapy of metastatic castration resistant prostate cancer patients. Data preparation includes lesion segmentation and affine registration. Our algorithm extracts suitable lesion patches and forwards them into a Siamese CNN trained to classify the lesion patch pairs as corresponding or non-corresponding lesions. Experiments have been performed with different input patch types and a Siamese network in 2D and 3D. The CNN model successfully learned to classify lesion assignments, reaching a lesion tracking accuracy of 83 % in its best configuration with an AUC = 0.91. For remaining lesions the pipeline accomplished a re-identification rate of 89 %. We proved that a CNN may facilitate the tracking of multiple lesions in PSMA PET/CT scans. Future clinical studies are necessary if this improves the prediction of the outcome of therapies.

eess.IV↗

arXiv2023

Improving image quality of sparse-view lung tumor CT images with U-Net

Background: We aimed at improving image quality (IQ) of sparse-view computed tomography (CT) images using a U-Net for lung metastasis detection and determining the best tradeoff between number of views, IQ, and diagnostic confidence. Methods: CT images from 41 subjects aged 62.8 $\pm$ 10.6 years (mean $\pm$ standard deviation), 23 men, 34 with lung metastasis, 7 healthy, were retrospectively selected (2016-2018) and forward projected onto 2,048-view sinograms. Six corresponding sparse-view CT data subsets at varying levels of undersampling were reconstructed from sinograms using filtered backprojection with 16, 32, 64, 128, 256, and 512 views. A dual-frame U-Net was trained and evaluated for each subsampling level on 8,658 images from 22 diseased subjects. A representative image per scan was selected from 19 subjects (12 diseased, 7 healthy) for a single-blinded multireader study. These slices, for all levels of subsampling, with and without U-Net postprocessing, were presented to three readers. IQ and diagnostic confidence were ranked using predefined scales. Subjective nodule segmentation was evaluated using sensitivity and Dice similarity coefficient (DSC); clustered Wilcoxon signed-rank test was used. Results: The 64-projection sparse-view images resulted in 0.89 sensitivity and 0.81 DSC, while their counterparts, postprocessed with the U-Net, had improved metrics (0.94 sensitivity and 0.85 DSC) (p = 0.400). Fewer views led to insufficient IQ for diagnosis. For increased views, no substantial discrepancies were noted between sparse-view and postprocessed images. Conclusions: Projection views can be reduced from 2,048 to 64 while maintaining IQ and the confidence of the radiologists on a satisfactory level.

cs.CV↗

arXiv2023

Runtime optimization of acquisition trajectories for X-ray computed tomography with a robotic sample holder

Tomographic imaging systems are expected to work with a wide range of samples that house complex structures and challenging material compositions, which can influence image quality in a bad way. Complex samples increase total measurement duration and may introduce beam-hardening artifacts that lead to poor reconstruction image quality. This work presents an online trajectory optimization method for an X-ray computed tomography system with a robotic sample holder. The proposed method reduces measurement time and increases reconstruction image quality by generating an optimized spherical trajectory for the given sample without prior knowledge. The trajectory is generated successively at runtime based on intermediate sample measurements. We present experimental results with the robotic sample holder where two sample measurements using an optimized spherical trajectory achieve improved reconstruction quality compared to a conventional spherical trajectory. Our results demonstrate the ability of our system to increase reconstruction image quality and avoid artifacts at runtime when no prior information about the sample is provided.

cs.RO↗

arXiv2023

Spherical acquisition trajectories for X-ray computed tomography with a robotic sample holder

This work presents methods for the seamless execution of arbitrary spherical trajectories with a seven-degree-of-freedom robotic arm as a sample holder. The sample holder is integrated into an existing X-ray computed tomography setup. We optimized the path planning and robot control algorithms for the seamless execution of spherical trajectories. A precision-manufactured sample holder part is attached to the robotic arm for the calibration procedure. Different designs of this part are tested and compared to each other for optimal coverage of trajectories and reconstruction image quality. We present experimental results with the robotic sample holder where a sample measurement on a spherical trajectory achieves improved reconstruction quality compared to a conventional circular trajectory. Our results demonstrate the superiority of the discussed system as it outperforms single-axis systems by reaching nearly 82\% of all possible rotations. The proposed system is a step towards higher image reconstruction quality in flexible X-ray CT systems. It will enable reduced scan times and radiation dose exposure with task-specific trajectories in the future, as it can capture information from various sample angles.

cs.RO↗

arXiv2023

Generating spectral dental panoramic images from single energy computed tomography volumes

Purpose: To implement a framework generating synthetic spectral panoramic images from single energy CT volumes. Using the framework output to compare the synthetic images against experimental spectral panoramic images for cross-verification. Methods: A simulation framework for generating synthetic spectral panoramic images from CT volumes is described. A cone beam CT scan of an anthropomorphic head phantom is used as input. An experimental spectral panoramic image of the same phantom is acquired. Results: The output of the framework of an anthropomorphic head phantom is compared against an experimental spectral panoramic image of the same phantom. The synthetic and experimental spectral panoramic images resemble each other considerably, especially the bone features. In the soft tissue images, there are some deviations, which are a result of the differences between the experimental and synthetic processing pipelines. Conclusions: It is demonstrated that generating synthetic spectral panoramic images from single energy CT volumes is possible. The synthetic images have many similarities with the experimental results, increasing the confidence in the correctness of the information contained within experimental spectral panoramic images and indicating that the synthetic images could be useful in further research.

physics.med-ph↗

arXiv2023

Improving Automated Hemorrhage Detection in Sparse-view Computed Tomography via Deep Convolutional Neural Network based Artifact Reduction

This is a preprint. The latest version has been published here: https://pubs.rsna.org/doi/10.1148/ryai.230275 Purpose: Sparse-view computed tomography (CT) is an effective way to reduce dose by lowering the total number of views acquired, albeit at the expense of image quality, which, in turn, can impact the ability to detect diseases. We explore deep learning-based artifact reduction in sparse-view cranial CT scans and its impact on automated hemorrhage detection. Methods: We trained a U-Net for artefact reduction on simulated sparse-view cranial CT scans from 3000 patients obtained from a public dataset and reconstructed with varying levels of sub-sampling. Additionally, we trained a convolutional neural network on fully sampled CT data from 17,545 patients for automated hemorrhage detection. We evaluated the classification performance using the area under the receiver operator characteristic curves (AUC-ROCs) with corresponding 95% confidence intervals (CIs) and the DeLong test, along with confusion matrices. The performance of the U-Net was compared to an analytical approach based on total variation (TV). Results: The U-Net performed superior compared to unprocessed and TV-processed images with respect to image quality and automated hemorrhage diagnosis. With U-Net post-processing, the number of views can be reduced from 4096 (AUC-ROC: 0.974; 95% CI: 0.972-0.976) views to 512 views (0.973; 0.971-0.975) with minimal decrease in hemorrhage detection (P<.001) and to 256 views (0.967; 0.964-0.969) with a slight performance decrease (P<.001). Conclusion: The results suggest that U-Net based artifact reduction substantially enhances automated hemorrhage detection in sparse-view cranial CTs. Our findings highlight that appropriate post-processing is crucial for optimal image quality and diagnostic accuracy while minimizing radiation dose.

eess.IV↗