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Fred Wolf

Publications and source records attributed to Fred Wolf.

At least 19 recordsLinked to original sources

Emergent tuning heterogeneity in cortical circuits is sensitive to cellular neuronal dynamics

Cortical circuits exhibit high levels of response diversity, even across apparently uniform neuronal populations. While emerging data-driven approaches exploit this heterogeneity to infer effective models of cortical circuit computation (e.g. Genkin et al. Nature 2025), the power of response diversity to enable inference of mechanistic circuit models is largely unexplored. Within the landscape of cortical circuit models, spiking neuron networks in the balanced state naturally exhibit high levels of response and tuning diversity emerging from their internal dynamics. A statistical theory for this emergent tuning heterogeneity, however, has only been formulated for binary spin models (Vreeswijk & Sompolinsky, 2005). Here we present a formulation of feature-tuned balanced state networks that allows for arbitrary and diverse dynamics of postsynaptic currents and variable levels of heterogeneity in cellular excitability but nevertheless is analytically exactly tractable with respect to the emergent tuning curve heterogeneity. Using this framework, we present a case study demonstrating that, for a wide range of parameters even the population mean response is non-universal and sensitive to mechanistic circuit details. As our theory enables exactly and analytically obtaining the likelihood-function of tuning heterogeneity given circuit parameters, we argue that it forms a powerful and rigorous basis for neural circuit inference.

q-bio.NC

Sparse chaos in cortical circuits

Nerve impulses, the currency of information flow in the brain, are generated by an instability of the neuronal membrane potential dynamics. Neuronal circuits exhibit collective chaos that appears essential for learning, memory, sensory processing, and motor control. However, the factors controlling the nature and intensity of collective chaos in neuronal circuits are not well understood. Here we use computational ergodic theory to demonstrate that basic features of nerve impulse generation profoundly affect collective chaos in neuronal circuits. Numerically exact calculations of Lyapunov spectra, Kolmogorov-Sinai-entropy, and upper and lower bounds on attractor dimension show that changes in nerve impulse generation in individual neurons moderately impact information encoding rates but qualitatively transform phase space structure. Specifically, we find a drastic reduction in the number of unstable manifolds, Kolmogorov-Sinai entropy, and attractor dimension. Beyond a critical point, marked by the simultaneous breakdown of the diffusion approximation, a peak in the largest Lyapunov exponent, and a localization transition of the leading covariant Lyapunov vector, networks exhibit sparse chaos: prolonged periods of near stable dynamics interrupted by short bursts of intense chaos. Analysis of large, more realistically structured networks supports the generality of these findings. In cortical circuits, biophysical properties appear tuned to this regime of sparse chaos. Our results reveal a close link between fundamental aspects of single-neuron biophysics and the collective dynamics of cortical circuits, suggesting that nerve impulse generation mechanisms are adapted to enhance circuit controllability and information flow.

q-bio.NC

An Analytically Solvable Model of Firing Rate Heterogeneity in Balanced State Networks

Distributions of neuronal activity within cortical circuits are often found to display highly skewed shapes with many neurons emitting action potentials at low or vanishing rates, while some are active at high rates. Theoretical studies were able to reproduce such distributions, but come with a lack of mathematical tractability, preventing a deeper understanding of the impact of model parameters. In this study, using the Gauss-Rice neuron model, we present a balanced-state cortical circuit model for which the firing rate distribution can be exactly calculated. It offers selfconsistent solutions to recurrent neuronal networks and allows for the combination of multiple neuronal populations, with single or multiple synaptic receptors (e.g. AMPA and NMDA in excitatory populations), paving the way for a deeper understanding of how firing rate distributions are impacted by single neuron or synaptic properties.

q-bio.NC

Signatures of heterogeneity in the statistical structure of target state aligned ensembles

Finite time convergence to functionally important target states is a key component of many biological processes. We previously found that the terminal approach phase of such dynamics exhibits universal types of stochastic dynamics that differ qualitatively between noise-dominated and force-dominated regimes of the approach dynamics. While for the noise-dominated regime the approach dynamics is uninformative about the underlying force law, in the force-dominated regime it enables the accurate inference of the underlying dynamics. Biological systems often exhibit substantial parameter heterogeneity, for instance through copy number fluctuations of key molecules or variability in modulating factors. Here, we extend our theory of target state aligned (TSA) stochastic dynamics to investigate the impact of parameter heterogeneity in the underlying stochastic dynamics. We examine the approach to target states for a wide range of dynamical laws and additive as well as multiplicative noise. We find that the distinct regimes of noise-dominated and force-dominated dynamics strongly differ in their sensitivity to parameter heterogeneity. In the noise-dominated regime, TSA ensembles are insensitive to parameter heterogeneity in the force law, but sensitive to sample to sample heterogeneity in the diffusion constant. For force-dominated dynamics, both parameter heterogeneity in the force law and diffusion constant change the behaviour of the non-stationary statistics and in particular the two-time-covariance functions. In this regime, TSA ensembles provide a sensitive readout of parameter heterogeneity. Under natural conditions, parameter heterogeneity in many biological systems cannot be experimentally controlled or eliminated. Our results provide a systematic theoretical foundation for the analysis of target state directed dynamics in a large class of systems with substantial heterogeneity.

physics.bio-ph

Reverse-time analysis and boundary classification of directional biological dynamics with multiplicative noise

The dynamics of living systems often serves the purpose of reaching functionally important target states. We previously proposed a theory to analyze stochastic biological dynamics evolving towards target states in reverse time. However, a large class of systems in biology can only be adequately described using state-dependent noise, which had not been discussed. For example, in gene regulatory networks, biochemical signaling networks or neuronal circuits, count fluctuations are the dominant noise component. We characterize such dynamics as an ensemble of target state aligned (TSA) trajectories and characterize its temporal evolution in reverse-time by generalized Fokker-Planck and stochastic differential equations with multiplicative noise. We establish the classification of boundary conditions for target state modeling for a wide range of power law dynamics, and derive a universal low-noise approximation of the final phase of target state convergence. Our work expands the range of theoretically tractable systems in biology and enables novel experimental design strategies for systems that involve target states.

physics.bio-ph

Reverse-time analysis uncovers universality classes in directional biological dynamics

Mesoscopic bio-systems typically evolve towards functionally important target states, such as cell-cycle checkpoints or decision boundaries for the release of specific behaviors. For the data-driven inference of the underlying directional out-of-equilibrium dynamics, we here develop a theory of target state aligned (TSA) ensembles. Target state alignment allows to analyze directional dynamics in reverse time, starting from the final conditions of the forward process. Knowledge about the initial conditions of the forward process is not required for the analysis. Our theory reveals whether and when such a system can be represented by a single, effective stochastic equation of motion. We show how, in these effective dynamics, genuine biological forces can be separated from spurious forces, which invariably arise from target state alignment. We apply our inference scheme to the example of cytokinetic ring constriction, and derive the universal low-noise and short-term behavior of TSA ensembles. Our theory establishes a transparent mathematical foundation for the analysis and inference of directed biological dynamics by target state alignment.

physics.bio-ph

Lyapunov spectra of chaotic recurrent neural networks

Brains process information through the collective dynamics of large neural networks. Collective chaos was suggested to underlie the complex ongoing dynamics observed in cerebral cortical circuits and determine the impact and processing of incoming information streams. In dissipative systems, chaotic dynamics takes place on a subset of phase space of reduced dimensionality and is organized by a complex tangle of stable, neutral and unstable manifolds. Key topological invariants of this phase space structure such as attractor dimension, and Kolmogorov-Sinai entropy so far remained elusive. Here we calculate the complete Lyapunov spectrum of recurrent neural networks. We show that chaos in these networks is extensive with a size-invariant Lyapunov spectrum and characterized by attractor dimensions much smaller than the number of phase space dimensions. We find that near the onset of chaos, for very intense chaos, and discrete-time dynamics, random matrix theory provides analytical approximations to the full Lyapunov spectrum. We show that a generalized time-reversal symmetry of the network dynamics induces a point-symmetry of the Lyapunov spectrum reminiscent of the symplectic structure of chaotic Hamiltonian systems. Fluctuating input reduces both the entropy rate and the attractor dimension. For trained recurrent networks, we find that Lyapunov spectrum analysis provides a quantification of error propagation and stability achieved. Our methods apply to systems of arbitrary connectivity, and we describe a comprehensive set of controls for the accuracy and convergence of Lyapunov exponents. Our results open a novel avenue for characterizing the complex dynamics of recurrent neural networks and the geometry of the corresponding chaotic attractors. They also highlight the potential of Lyapunov spectrum analysis as a diagnostic for machine learning applications of recurrent networks.

nlin.CD

An axon initial segment is required for temporal precision in action potential encoding by neuronal populations

Central neurons initiate action potentials (APs) in the axon initial segment (AIS), a compartment characterized by a high concentration of voltage-dependent ion channels and specialized cytoskeletal anchoring proteins arranged in a regular nanoscale pattern. Although the AIS was a key evolutionary innovation in neurons, the functional benefits it confers are not clear. Using a mutation of the AIS cytoskeletal protein βIV-spectrin, we here establish an in vitro model of neurons with a perturbed AIS architecture that retains nanoscale order but loses the ability to maintain a high NaV density. Combining experiments and simulations we show that a high NaV density in the AIS is not required for axonal AP initiation; it is however crucial for a high bandwidth of information encoding and AP timing precision. Our results provide the first experimental demonstration of axonal AP initiation without high axonal channel density and suggest that increasing the bandwidth of the neuronal code and hence the computational efficiency of network function was a major benefit of the evolution of the AIS.

q-bio.NC

Ultrafast population coding and axo-somatic compartmentalization

Cortical neurons in the fluctuation driven regime can realize ultrafast population encoding. The underlying biophysical mechanisms, however, are not well understood. Reducing the sharpness of the action potential onset can impair ultrafast population encoding, but it is not clear whether a sharp action potential onset is sufficient for ultrafast population encoding. One hypothesis proposes that the sharp action potential onset is caused by the electrotonic separation of the site of action potential initiation from the soma, and that this spatial separation also results in ultrafast population encoding. Here we examined this hypothesis by studying the linear response properties of model neurons with a defined initiation site. We find that placing the initiation site at different axonal positions has only a weak impact on the linear response function of the model. It fails to generate the ultrafast response and high bandwidth that is observed in cortical neurons. Furthermore, the high frequency regime of the linear response function of this model is insensitive to correlation times of the input current contradicting empirical evidence. When we increase the voltage sensitivity of sodium channels at the initiation site, the two empirically observed phenomena can be recovered. We provide an explanation for the dissociation of sharp action potential onset and ultrafast response. By investigating varying soma sizes, we furthermore highlight the effect of neuron morphology on the linear response. Our results show that a sharp onset of action potentials is not sufficient for the ultrafast response. In the light of recent reports of activity-dependent repositioning of the axon initial segment, our study predicts that a more distal initiation site can lead to an increased sharpness of the somatic waveform but it does not affect the linear response of a population of neurons.

q-bio.NC

Statistical mechanics of phase-space partitioning in large-scale spiking neuron circuits

Synaptic interactions structure the phase space of the dynamics of neural circuits and constrain neural computation. Understanding how requires methods that handle those discrete interactions, yet few exist. Recently, it was discovered that even random networks exhibit dynamics that partitions the phase space into numerous attractor basins. Here we utilize this phenomenon to develop theory for the geometry of phase space partitioning in spiking neural circuits. We find basin boundaries structuring the phase space are pre-images of spike-time collision events. Formulating a statistical theory of spike-time collision events, we derive expressions for the rate of divergence of neighboring basins and for their size distribution. This theory reveals that the typical basin diameter grows with inhibitory coupling strength and shrinks with the rate of spike events. Our study provides an analytical and generalizable approach for dissecting how connectivity, coupling strength, single neuron dynamics and population activity shape the phase space geometry of spiking circuits.

cond-mat.dis-nn

Random wiring, ganglion cell mosaics, and the functional architecture of the visual cortex

The architecture of iso-orientation domains in the primary visual cortex of placental carnivores and primates apparently follows species invariant quantitative laws. Dynamical optimization models assuming that neurons coordinate their stimulus preferences throughout cortical circuits linking millions of cells specifically predict these invariants. This might indicate that V1's intrinsic connectome and its functional architecture adhere to a single optimization principle with high precision and robustness. To validate this hypothesis, it is critical to closely examine the quantitative predictions of alternative candidate theories. Random feedforward wiring within the retino-cortical pathway represents a conceptually appealing alternative to dynamical circuit optimization because random dimension-expanding projections are believed to generically exhibit computationally favorable properties for stimulus representations. Here, we ask whether the quantitative invariants of V1 architecture can be explained as a generic emergent property of random wiring. We generalize and examine the stochastic wiring model proposed by Ringach and coworkers, in which iso-orientation domains in the visual cortex arise through random feedforward connections between semi-regular mosaics of retinal ganglion cells (RGCs) and visual cortical neurons. We derive closed-form expressions for cortical receptive fields and domain layouts predicted by the model for perfectly hexagonal RGC mosaics [...] We conclude that V1 layout invariants are specific quantitative signatures of visual cortical optimization, which cannot be explained by generic random feedforward-wiring models. *See pdf for the full abstract.*

q-bio.NC

Impact of membrane bistability on dynamical response of neuronal populations

Neurons in many brain areas can develop pronounced depolarized state of membrane potential (up state) in addition to the normal hyperpolarized down state near the resting potential. The influence of the up state on signal encoding, however, is not well investigated. Here we construct a one-dimensional bistable neuron model and calculate the linear response to noisy oscillatory inputs analytically. We find that with the appearance of an up state, the transmission function is enhanced by the emergence of a local maximum at some optimal frequency and the phase lag relative to the input signal is reduced. We characterize the dependence of the enhancement of frequency response on intrinsic dynamics and on the occupancy of the up state.

q-bio.NC

Can retinal ganglion cell dipoles seed iso-orientation domains in the visual cortex?

It has been argued that the emergence of roughly periodic orientation preference maps (OPMs) in the primary visual cortex (V1) of carnivores and primates can be explained by a so-called statistical connectivity model. This model assumes that input to V1 neurons is dominated by feed-forward projections originating from a small set of retinal ganglion cells (RGCs). The typical spacing between adjacent cortical orientation columns preferring the same orientation then arises via Moir\'{e}-Interference between hexagonal ON/OFF RGC mosaics. While this Moir\'{e}-Interference critically depends on long-range hexagonal order within the RGC mosaics, a recent statistical analysis of RGC receptive field positions found no evidence for such long-range positional order. Hexagonal order may be only one of several ways to obtain spatially repetitive OPMs in the statistical connectivity model. Here, we investigate a more general requirement on the spatial structure of RGC mosaics that can seed the emergence of spatially repetitive cortical OPMs, namely that angular correlations between so-called RGC dipoles exhibit a spatial structure similar to that of OPM autocorrelation functions. Both in cat beta cell mosaics as well as primate parasol receptive field mosaics we find that RGC dipole angles are spatially uncorrelated. To help assess the level of these correlations, we introduce a novel point process that generates mosaics with realistic nearest neighbor statistics and a tunable degree of spatial correlations of dipole angles. Using this process, we show that given the size of available data sets, the presence of even weak angular correlations in the data is very unlikely. We conclude that the layout of ON/OFF ganglion cell mosaics lacks the spatial structure necessary to seed iso-orientation domains in the primary visual cortex.

q-bio.NC

Continuous Dynamic Photostimulation - inducing in-vivo-like fluctuating conductances with Channelrhodopsins

Central neurons operate in a regime of constantly fluctuating conductances, induced by thousands of presynaptic cells. Channelrhodopsins have been almost exclusively used to imprint a fixed spike pattern by sequences of brief depolarizations. Here we introduce continuous dynamic photostimulation (CoDyPs), a novel approach to mimic in-vivo like input fluctuations noninvasively in cells transfected with the weakly inactivating channelrhodopsin variant ChIEF. Even during long-term experiments, cultured neurons subjected to CoDyPs generate seemingly random, but reproducible spike patterns. In voltage clamped cells CoDyPs induced highly reproducible current waveforms that could be precisely predicted from the light-conductance transfer function of ChIEF. CoDyPs can replace the conventional, flash-evoked imprinting of spike patterns in in-vivo and in-vitro studies, preserving natural activity. When combined with non-invasive spike-detection, CoDyPs allows the acquisition of order of magnitudes larger data sets than previously possible, for studies of dynamical response properties of many individual neurons.

q-bio.NC

Coordinated optimization of visual cortical maps (I) Symmetry-based analysis

In the primary visual cortex of primates and carnivores, functional architecture can be characterized by maps of various stimulus features such as orientation preference (OP), ocular dominance (OD), and spatial frequency. It is a long-standing question in theoretical neuroscience whether the observed maps should be interpreted as optima of a specific energy functional that summarizes the design principles of cortical functional architecture. A rigorous evaluation of this optimization hypothesis is particularly demanded by recent evidence that the functional architecture of OP columns precisely follows species invariant quantitative laws. Because it would be desirable to infer the form of such an optimization principle from the biological data, the optimization approach to explain cortical functional architecture raises the following questions: i) What are the genuine ground states of candidate energy functionals and how can they be calculated with precision and rigor? ii) How do differences in candidate optimization principles impact on the predicted map structure and conversely what can be learned about an hypothetical underlying optimization principle from observations on map structure? iii) Is there a way to analyze the coordinated organization of cortical maps predicted by optimization principles in general? To answer these questions we developed a general dynamical systems approach to the combined optimization of visual cortical maps of OP and another scalar feature such as OD or spatial frequency preference.

q-bio.NC

Coordinated optimization of visual cortical maps (II) Numerical studies

It is an attractive hypothesis that the spatial structure of visual cortical architecture can be explained by the coordinated optimization of multiple visual cortical maps representing orientation preference (OP), ocular dominance (OD), spatial frequency, or direction preference. In part (I) of this study we defined a class of analytically tractable coordinated optimization models and solved representative examples in which a spatially complex organization of the orientation preference map is induced by inter-map interactions. We found that attractor solutions near symmetry breaking threshold predict a highly ordered map layout and require a substantial OD bias for OP pinwheel stabilization. Here we examine in numerical simulations whether such models exhibit biologically more realistic spatially irregular solutions at a finite distance from threshold and when transients towards attractor states are considered. We also examine whether model behavior qualitatively changes when the spatial periodicities of the two maps are detuned and when considering more than 2 feature dimensions. Our numerical results support the view that neither minimal energy states nor intermediate transient states of our coordinated optimization models successfully explain the spatially irregular architecture of the visual cortex. We discuss several alternative scenarios and additional factors that may improve the agreement between model solutions and biological observations.

q-bio.NC

Dynamic effective connectivity of inter-areal brain circuits

Anatomic connections between brain areas affect information flow between neuronal circuits and the synchronization of neuronal activity. However, such structural connectivity does not coincide with effective connectivity, related to the more elusive question "Which areas cause the present activity of which others?". Effective connectivity is directed and depends flexibly on contexts and tasks. Here we show that a dynamic effective connectivity can emerge from transitions in the collective organization of coherent neural activity. Integrating simulation and semi-analytic approaches, we study mesoscale network motifs of interacting cortical areas, modeled as large random networks of spiking neurons or as simple rate units. Through a causal analysis of time-series of model neural activity, we show that different dynamical states generated by a same structural connectivity motif correspond to distinct effective connectivity motifs. Such effective motifs can display a dominant directionality, due to spontaneous symmetry breaking and effective entrainment between local brain rhythms, although all connections in the considered structural motifs are reciprocal [...] Finally, we analyze how the information encoded in spiking patterns of a local neuronal population is propagated across a fixed structural connectivity motif, demonstrating that changes in the active effective connectivity regulate both the efficiency and the directionality of information transfer [...] Going beyond these early proposals, we advance here that dynamic interactions between brain rhythms provide as well the basis for the self-organized control of this "communication-through-coherence", making thus possible a fast "on-demand" reconfiguration of global information routing modalities.

q-bio.NC

Coverage, Continuity and Visual Cortical Architecture

The primary visual cortex of many mammals contains a continuous representation of visual space, with a roughly repetitive aperiodic map of orientation preferences superimposed. It was recently found that orientation preference maps (OPMs) obey statistical laws which are apparently invariant among species widely separated in eutherian evolution. Here, we examine whether one of the most prominent models for the optimization of cortical maps, the elastic net (EN) model, can reproduce this common design. The EN model generates representations which optimally trade of stimulus space coverage and map continuity. While this model has been used in numerous studies, no analytical results about the precise layout of the predicted OPMs have been obtained so far. We present a mathematical approach to analytically calculate the cortical representations predicted by the EN model for the joint mapping of stimulus position and orientation. We find that in all previously studied regimes, predicted OPM layouts are perfectly periodic. An unbiased search through the EN parameter space identifies a novel regime of aperiodic OPMs with pinwheel densities lower than found in experiments. In an extreme limit, aperiodic OPMs quantitatively resembling experimental observations emerge. Stabilization of these layouts results from strong nonlocal interactions rather than from a coverage-continuity-compromise. Our results demonstrate that optimization models for stimulus representations dominated by nonlocal suppressive interactions are in principle capable of correctly predicting the common OPM design. They question that visual cortical feature representations can be explained by a coverage-continuity-compromise.

q-bio.NC