arXiv subjects

Friederike Schmid

Publications and source records attributed to Friederike Schmid.

At least 73 records · Page 4Linked to original sources

arXiv2016

Complex Formation between Polyelectrolytes and Oppositely Charged Oligoelectrolytes

We study the complex formation between one long polyanion chain and many short oligocation chains by computer simulations. We employ a coarse-grained bead-spring model for the polyelectrolyte chains, and model explicitly the small salt ions. We systematically vary the concentration and the length of the oligocation, and examine how the oligocations affects the chain conformation, the static structure factor, the radial and axial distribution of various charged species, and the number of bound ions in the complex. At low oligocation concentration, the polyanion has an extended structure. Upon increasing the oligocation concentration, the polyanion chain collapses and forms a compact globule, but the complex still carries a net negative charge. Once the total charge of the oligocations is equal to that of the polyanion, the collapse stops and is replaced by a slow expansion. In this regime, the net charge on the complexes is positive or neutral, depending on the microion concentration in solution. The expansion can be explained by the reduction of the oligocation bridging. We find that the behavior and the structure of the complex are largely independent of the length of oligocations, and very similar to that observed when replacing the oligocations by multivalent salt cations, and conclude that the main driving force keeping the complex together is the release of monovalent counterions and coions. We speculate on the implications of this finding for the problem of controlled oligolyte release and oligolyte substitution.

cond-mat.soft↗

arXiv2016

Collective behavior of quorum-sensing run-and-tumble particles in confinement

We study a generic model for quorum-sensing bacteria in circular confinement. Every bacterium produces signaling molecules, the local concentration of which triggers a response when a certain threshold is reached. If this response lowers the motility then an aggregation of bacteria occurs, which differs fundamentally from standard motility-induced phase separation due to the long-ranged nature of the concentration of signal molecules. We analyze this phenomenon analytically and by numerical simulations employing two different protocols leading to stationary cluster and ring morphologies, respectively.

cond-mat.soft↗

arXiv2015

Interplay of curvature-induced micro- and nanodomain structures in multicomponent lipid bilayers

We discuss different mechanisms for curvature-induced domain formation in multicomponent lipid membranes and present a theoretical model that allows us to study the interplay between the domains. The model represents the membrane by two coupled monolayers, which each carry an additional order parameter field describing the local lipid composition. The spontaneous curvature of each monolayer is coupled to the local composition, moreover, the lipid compositions on opposing monolayers are coupled to each other. Using this model, we calculate the phase behavior of the bilayer in mean-field approximation. The resulting phase diagrams are surprisingly complex and reveal a variety of phases and phase transitions, including a decorated microdomain phase where nanodomains are aligned along the microdomain boundaries. Our results suggest that external membrane tension can be used to control the lateral organization of nanodomains (which might be associated with lipid "rafts") in a multicomponent lipid bilayer.

physics.bio-ph↗

arXiv2015

Statistical properties of linear-hyperbranched graft copolymers prepared via "hypergrafting" of AB_m monomers from linear B-functional core chains: A Molecular Dynamics simulation

The reaction of $AB_m$ monomers (m=2,3) with a multifunctional B_f-type polymer chain ("hypergrafting") is studied by coarse-grained molecular dynamics simulations. The $AB_m$ monomers are hypergrafted using the slow monomer addition strategy. Fully dendronized, i.e., perfectly branched polymers are also simulated for comparison. The degree of branching DB of the molecules obtained with the "hypergrafting" process critically depends on the rate with which monomers attach to inner monomers compared to terminal monomers. This ratio is more favorable if the $AB_m$ monomers have lower reactivity, since the free monomers then have time to diffuse inside the chain. Configurational chain properties are also determined, showing that the stretching of the polymer backbone as a consequence of the "hypergrafting" procedure is much less pronounced than for perfectly dendronized chains. Furthermore, we analyze the scaling of various quantities with molecular weight M for large M (M>100). The Wiener index scales as $M^2.3$, which is intermediate between linear chains ($M^3$) and perfectly branched polymers ($M^2 \ln(M)$). The polymer size, characterized by the radius of gyration $R_g$ or the hydrodynamic radius $R_h$, is found to scale as $R_{g,h}~M^ν$ with $ν~0.38$, which lies between the exponent of diffusion limited aggregation ($ν=0.4$) and the mean-field exponent predicted by Konkolewicz and coworkers ($ν=0.33$).

cond-mat.soft↗

arXiv2015

Computer simulations of single particles in external electric fields

Applying electric fields is an attractive way to control and manipulate single particles or molecules, e.g., in lab-on-a-chip devices. However, the response of nanosize objects in electrolyte solution to external fields is far from trivial. It is the result of a variety of dynamical processes taking place in the ion cloud surrounding charged particles and in the bulk electrolyte, and it is governed by an intricate interplay of electrostatic and hydrodynamic interactions. Already systems composed of one single particle in electrolyte solution exhibit a complex dynamical behaviour. In this review, we discuss recent coarse-grained simulations that have been performed to obtain a molecular-level understanding of the dynamic and dielectric response of single particles and single macromolecules to external electric fields. We address both the response of charged particles to constant fields (DC fields), which can be characterized by an electrophoretic mobility, and the dielectric response of both uncharged and charged particles to alternating fields (AC fields), which is described by a complex polarizability. Furthermore, we give a brief survey of simulation algorithms and highlight some recent developments.

cond-mat.soft↗

arXiv2015

Stimuli-responsive brushes with active minority components: Monte Carlo study and analytical theory

Using a combination of analytical theory, Monte Carlo simulations, and three dimensional self-consistent field calculations, we study the equilibrium properties and the switching behavior of adsorption-active polymer chains included in a homopolymer brush. The switching transition is driven by a conformational change of a small fraction of minority chains, which are attracted by the substrate. Depending on the strength of the attractive interaction, the minority chains assume one of two states: An exposed state characterized by a stem-crown-like conformation, and an adsorbed state characterized by a flat two-dimensional structure. Comparing the Monte Carlo simulations, which use an Edwards-type Hamiltonian with density dependent interactions, with the predictions from self-consistent-field theory based on the same Hamiltonian, we find that thermal density fluctuations affect the system in two different ways. First, they renormalize the excluded volume interaction parameter $v_\mathrm{\tiny bare}$ inside the brush. The properties of the brushes can be reproduced by self-consistent field theory if one replaces $v_\mathrm{\tiny bare}$ by an effective parameter $v_{\mathrm{\tiny eff}}$, where the ratio of second virial coefficients $B_{\mathrm{\tiny eff}}/B_\mathrm{\tiny bare}$ depends on the range of monomer interactions, but not on the grafting density, the chain length, and $v_\mathrm{\tiny bare}$. Second, density fluctuations affect the conformations of chains at the brush surface and have a favorable effect on the characteristics of the switching transition: In the interesting regime where the transition is sharp, they reduce the free energy barrier between the two states significantly. The scaling behavior of various quantities is also analyzed and compared with analytical predictions.

cond-mat.soft↗

arXiv2015

Flows and mixing in channels with misaligned superhydrophobic walls

Aligned superhydrophobic surfaces with the same texture orientation reduce drag in the channel and generate secondary flows transverse to the direction of the applied pressure gradient. Here we show that a transverse shear can be easily generated by using superhydrophobic channels with misaligned textured surfaces. We propose a general theoretical approach to quantify this transverse flow by introducing the concept of an effective shear tensor. To illustrate its use, we present approximate theoretical solutions and Dissipative Particle Dynamics simulations for striped superhydrophobic channels. Our results demonstrate that the transverse shear leads to complex flow patterns, which provide a new mechanism of a passive vertical mixing at the scale of a texture period. Depending on the value of Reynolds number two different scenarios occur. At relatively low Reynolds number the flow represents a transverse shear superimposed with two co-rotating vortices. For larger Reynolds number these vortices become isolated, by suppressing fluid transport in the transverse direction.

physics.flu-dyn↗

arXiv2015

An efficient dissipative particle dynamics-based algorithm for simulating electrolyte solutions

We propose an efficient simulation algorithm based on the dissipative particle dynamics (DPD) method for studying electrohydrodynamic phenomena in electrolyte fluids. The fluid flow is mimicked with DPD particles while the evolution of the concentration of the ionic species is described using Brownian pseudo particles. The method is designed especially for systems with high salt concentrations, as explicit treatment of the salt ions becomes computationally expensive. For illustration, we apply the method to electro-osmotic flow over patterned, superhydrophobic surfaces. The results are in good agreement with recent theoretical predictions.

physics.comp-ph↗

arXiv2014

Computational studies of biomembrane systems: Theoretical considerations, simulation models, and applications

This chapter summarizes several approaches combining theory, simulation and experiment that aim for a better understanding of phenomena in lipid bilayers and membrane protein systems, covering topics such as lipid rafts, membrane mediated interactions, attraction between transmembrane proteins, and aggregation in biomembranes leading to large superstructures such as the light harvesting complex of green plants. After a general overview of theoretical considerations and continuum theory of lipid membranes we introduce different options for simulations of biomembrane systems, addressing questions such as: What can be learned from generic models? When is it expedient to go beyond them? And what are the merits and challenges for systematic coarse graining and quasi-atomistic coarse grained models that ensure a certain chemical specificity?

physics.bio-ph↗

arXiv2014

Sharp and fast: Sensors and switches based on polymer brushes with adsorption-active minority chains

We propose a design for polymer-based sensors and switches with sharp switching transition and fast response time. The switching mechanism involves a radical change in the conformations of adsorption-active minority chains in a brush. Such transitions can be induced by a temperature change of only about ten degrees, and the characteristic time of the conformational change is less than a second. We present an analytical theory for these switches and support it by self-consistent field calculations and Brownian dynamics simulations.

cond-mat.soft↗

arXiv2014

The Structure of Cholesterol in Lipid Rafts

Rafts, or functional domains, are transient nano- or mesoscopic structures in the plasma membrane and are thought to be essential for many cellular processes such as signal transduction, adhesion, trafficking and lipid/protein sorting. Observations of these membrane heterogeneities have proven challenging, as they are thought to be both small and short-lived. With a combination of coarse-grained molecular dynamics simulations and neutron diffraction using deuterium labeled cholesterol molecules we observe raft-like structures and determine the ordering of the cholesterol molecules in binary cholesterol-containing lipid membranes. From coarse-grained computer simulations, heterogenous membranes structures were observed and characterized as small, ordered domains. Neutron diffraction was used to study the lateral structure of the cholesterol molecules. We find pairs of strongly bound cholesterol molecules in the liquid-disordered phase, in accordance with the umbrella model. Bragg peaks corresponding to ordering of the cholesterol molecules in the raft-like structures were observed and indexed by two different structures: a monoclinic structure of ordered cholesterol pairs of alternating direction in equilibrium with cholesterol plaques, i.e., triclinic cholesterol bilayers.

physics.bio-ph↗

arXiv2014

Computer Simulations of Charged Colloids in Alternating Electric Fields

We briefly review recent theoretical and simulation studies of charged colloidal dispersions in alternating electric fields (AC fields). The response of single colloid to an external field can be characterized by a complex polarizability, which describes the dielectric properties of the colloid and its surrounding electrical double layer. We present computer simulation studies of single spherical colloid, using a coarse-grained mesoscale approach that accounts in full for hydrodynamic and electrostatic interactions as well as for thermal fluctuations. We investigate systematically a number of controlling parameters, such as the amplitude and frequency of the AC-fields. The results are in good agreement with recent theoretical predictions.

cond-mat.soft↗

arXiv2013

A Dissipative-Particle-Dynamics Model for Simulating Dynamics of Charged Colloid

A mesoscopic colloid model is developed in which a spherical colloid is represented by many interacting sites on its surface. The hydrodynamic interactions with thermal fluctuations are taken accounts in full using Dissipative Particle Dynamics, and the electrostatic interactions are simulated using Particle-Particle-Particle Mesh method. This new model is applied to investigate the electrophoretic mobility of a charged colloid under an external electric field, and the influence of salt concentration and colloid charge are systematically studied. The simulation results show good agreement with predictions from the electrokinetic theory.

cond-mat.soft↗

arXiv2013

Effective slip-length tensor for a flow over weakly slipping stripes

We discuss the flow past a flat heterogeneous solid surface decorated by slipping stripes. The spatially varying slip length, $b(y)$, is assumed to be small compared to the scale of the heterogeneities, $L$, but finite. For such "weakly" slipping surfaces, earlier analyses have predicted that the effective slip length is simply given by the surface-averaged slip length, which implies that the effective slip-length tensor becomes isotropic. Here we show that a different scenario is expected if the local slip length has step-like jumps at the edges of slipping heterogeneities. In this case, the next-to-leading term in an expansion of the effective slip-length tensor in powers of ${max}\,(b(y)/L)$ becomes comparable to the leading-order term, but anisotropic, even at very small $b(y)/L$. This leads to an anisotropy of the effective slip, and to its significant reduction compared to the surface-averaged value. The asymptotic formulae are tested by numerical solutions and are in agreement with results of dissipative particle dynamics simulations.

physics.flu-dyn↗

arXiv2013

Effective slippage on superhydrophobic trapezoidal grooves

We study the effective slippage on superhydrophobic grooves with trapezoidal cross-sections of various geometries (including the limiting cases of triangles and rectangular stripes), by using two complementary approaches. First, dissipative particle dynamics (DPD) simulations of a flow past such surfaces have been performed to validate an expression [E.S.Asmolov and O.I.Vinogradova, J. Fluid Mech. \textbf{706}, 108 (2012)] that relates the eigenvalues of the effective slip-length tensor for one-dimensional textures. Second, we propose theoretical estimates for the effective slip length and calculate it numerically by solving the Stokes equation based on a collocation method. The comparison between the two approaches shows that they are in excellent agreement. Our results demonstrate that the effective slippage depends strongly on the area-averaged slip, the amplitude of the roughness, and on the fraction of solid in contact with the liquid. To interpret these results, we analyze flow singularities near slipping heterogeneities, and demonstrate that they inhibit the effective slip and enhance the anisotropy of the flow. Finally, we propose some guidelines to design optimal one-dimensional superhydrophobic surfaces, motivated by potential applications in microfluidics.

physics.flu-dyn↗

arXiv2013

Using field theory to construct hybrid particle-continuum simulation schemes with adaptive resolution for soft matter systems

We develop a multiscale hybrid scheme for simulations of soft condensed matter systems, which allows one to treat the system at the particle level in selected regions of space, and at the continuum level elsewhere. It is derived systematically from an underlying particle-based model by field theoretic methods. Particles in different representation regions can switch representations on the fly, controlled by a spatially varying tuning function. As a test case, the hybrid scheme is applied to simulate colloid-polymer composites with high resolution regions close to the colloids. The hybrid simulations are significantly faster than reference simulations of a pure particle-based model, and the results are in good agreement.

cond-mat.soft↗

arXiv2013

Fluctuations in lipid bilayers: Are they understood?

We review recent computer simulation studies of undulating lipid bilayers. Theoretical interpretations of such fluctuating membranes are most commonly based on generalized Helfrich-type elastic models, with additional contributions of local "protrusions" and/or density fluctuations. Such models provide an excellent basis for describing the fluctuations of tensionless bilayers in the fluid phase at a quantitative level. However, this description is found to fail for membranes in the gel phase and for membranes subject to high tensions. The fluctuations of tilted gel membranes show a signature of the modulated ripple structure, which is a nearby phase observed in the pretransition regime between the fluid and tilted gel state. This complicates a quantitative analysis on mesoscopic length scales. In the case of fluid membranes under tension, the large-wavelength fluctuation modes are found to be significantly softer than predicted by theory. In the latter context, we also address the general problem of the relation between frame tension and the fluctuation tension, which has been discussed somewhat controversially in recent years. Simulations of very simple model membranes with fixed area show that the fluctuations should be controlled by the frame tension, and not by the internal tension.

physics.bio-ph↗

arXiv2013

Self-Consistent Field Approach for Crosslinked Copolymer Materials

A generalized self-consistent field approach for polymer networks with fixed topology is developed. It is shown that the theory reproduces the localization of crosslinks which is characteristic for gels. The theory is then used to study the order-disorder transition in regular networks of endlinked diblock copolymers. Compared to diblock copolymer melts, the transition is shifted towards lower values of the incompatibility parameter $χ$ (the Flory- Huggins parameter). Moreover, the transition becomes strongly first order already at the mean-field level. If stress is applied, the transition is further shifted and finally vanishes in a critical point.

cond-mat.soft↗