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Fuli Feng

Publications and source records attributed to Fuli Feng.

At least 55 records · Page 3Linked to original sources

NextQuill: Causal Preference Modeling for Enhancing LLM Personalization

Personalizing large language models (LLMs) for individual users has become increasingly important as they are progressively integrated into real-world applications to support users' daily lives. However, existing personalization approaches often fail to distinguish which components of model predictions and training data truly reflect user preferences, leading to superficial personalization alignment. In this paper, we introduce NextQuill, a novel LLM personalization alignment framework grounded in causal preference modeling. We approach personalization from a causal perspective, treating both model predictions and ground-truth data generation as outcomes influenced by user preferences, along with other factors. We define the true preference effect as the causal impact of user history (which reflects preferences) on each token prediction or data generation instance, estimated through causal intervention techniques. Building on this insight, NextQuill introduces two complementary alignment strategies: (1) aligning model-internal causal preference effects on predictions with those reflected in ground-truth data, rather than indiscriminately fitting predictions, and (2) focusing on fitting preference-bearing tokens identified via ground-truth data preference effects, rather than treating all tokens uniformly. By integrating these strategies, NextQuill shifts the alignment process toward learning from causal preference effects, facilitating more effective and personalized adaptation. Experiments across multiple personalization benchmarks demonstrate that NextQuill significantly improves personalization quality, offering a principled, causal foundation for LLM personalization. Our codes are available on https://github.com/juntaoyou/NextQuill.

cs.IR↗

CAPSUL: A Comprehensive Human Protein Benchmark for Subcellular Localization

Subcellular localization is a crucial biological task for drug target identification and function annotation. Although it has been biologically realized that subcellular localization is closely associated with protein structure, no existing dataset offers comprehensive 3D structural information with detailed subcellular localization annotations, thus severely hindering the application of promising structure-based models on this task. To address this gap, we introduce a new benchmark called $\mathbf{CAPSUL}$, a $\mathbf{C}$omprehensive hum$\mathbf{A}$n $\mathbf{P}$rotein benchmark for $\mathbf{SU}$bcellular $\mathbf{L}$ocalization. It features a dataset that integrates diverse 3D structural representations with fine-grained subcellular localization annotations carefully curated by domain experts. We evaluate this benchmark using a variety of state-of-the-art sequence-based and structure-based models, showcasing the importance of involving structural features in this task. Furthermore, we explore reweighting and single-label classification strategies to facilitate future investigation on structure-based methods for this task. Lastly, we showcase the powerful interpretability of structure-based methods through a case study on the Golgi apparatus, where we discover a decisive localization pattern $α$-helix from attention mechanisms, demonstrating the potential for bridging the gap with intuitive biological interpretability and paving the way for data-driven discoveries in cell biology.

cs.AI↗

Medical Reasoning with Large Language Models: A Survey and MR-Bench

Large language models (LLMs) have achieved strong performance on medical exam-style tasks, motivating growing interest in their deployment in real-world clinical settings. However, clinical decision-making is inherently safety-critical, context-dependent, and conducted under evolving evidence. In such situations, reliable LLM performance depends not on factual recall alone, but on robust medical reasoning. In this work, we present a comprehensive review of medical reasoning with LLMs. Grounded in cognitive theories of clinical reasoning, we conceptualize medical reasoning as an iterative process of abduction, deduction, and induction, and organize existing methods into seven major technical routes spanning training-based and training-free approaches. We further conduct a unified cross-benchmark evaluation of representative medical reasoning models under a consistent experimental setting, enabling a more systematic and comparable assessment of the empirical impact of existing methods. To better assess clinically grounded reasoning, we introduce MR-Bench, a benchmark derived from real-world hospital data. Evaluations on MR-Bench expose a pronounced gap between exam-level performance and accuracy on authentic clinical decision tasks. Overall, this survey provides a unified view of existing medical reasoning methods, benchmarks, and evaluation practices, and highlights key gaps between current model performance and the requirements of real-world clinical reasoning.

cs.CL↗

Verifiable Reasoning for LLM-based Generative Recommendation

Reasoning in Large Language Models (LLMs) has recently shown strong potential in enhancing generative recommendation through deep understanding of complex user preference. Existing approaches follow a {reason-then-recommend} paradigm, where LLMs perform step-by-step reasoning before item generation. However, this paradigm inevitably suffers from reasoning degradation (i.e., homogeneous or error-accumulated reasoning) due to the lack of intermediate verification, thus undermining the recommendation. To bridge this gap, we propose a novel \textbf{\textit{reason-verify-recommend}} paradigm, which interleaves reasoning with verification to provide reliable feedback, guiding the reasoning process toward more faithful user preference understanding. To enable effective verification, we establish two key principles for verifier design: 1) reliability ensures accurate evaluation of reasoning correctness and informative guidance generation; and 2) multi-dimensionality emphasizes comprehensive verification across multi-dimensional user preferences. Accordingly, we propose an effective implementation called VRec. It employs a mixture of verifiers to ensure multi-dimensionality, while leveraging a proxy prediction objective to pursue reliability. Experiments on four real-world datasets demonstrate that VRec substantially enhances recommendation effectiveness and scalability without compromising efficiency. The codes can be found at https://github.com/Linxyhaha/Verifiable-Rec.

cs.IR↗

MURE: Hierarchical Multi-Resolution Encoding via Vision-Language Models for Visual Document Retrieval

Visual Document Retrieval (VDR) requires representations that capture both fine-grained visual details and global document structure to ensure retrieval efficacy while maintaining computational efficiency. Existing VDR models struggle to balance effectiveness and efficiency when processing high-resolution documents: they often either lose fine-grained information or generate an excessive number of visual tokens, resulting in significant indexing overhead and high retrieval latency. In this work, we rethink the visual encoding mechanism and propose a new X-VisEmb paradigm that progresses from multi-resolution sampling and encoding, through cross-granularity feature fusion, to adaptive representation distillation. A preliminary study validates its feasibility and effectiveness in capturing complementary visual cues at varying scales. Building on the insights, we develop MURE, a novel framework that employs VLMs as a hierarchical multi-resolution encoder, integrates resolution-level Matryoshka representation learning (RMRL) for effective feature fusion, and applies a semantic-aware hierarchical clustering mechanism for visual token compression. Experiments on two widely used VDR benchmarks show that our MURE framework consistently beats strong baselines. Furthermore, it significantly outperforms ColPali with only 50% of its visual token budget.

cs.CV↗

Think-While-Generating: On-the-Fly Reasoning for Personalized Long-Form Generation

Preference alignment has enabled large language models (LLMs) to better reflect human expectations, but current methods mostly optimize for population-level preferences, overlooking individual users. Personalization is essential, yet early approaches-such as prompt customization or fine-tuning-struggle to reason over implicit preferences, limiting real-world effectiveness. Recent "think-then-generate" methods address this by reasoning before response generation. However, they face challenges in long-form generation: their static one-shot reasoning must capture all relevant information for the full response generation, making learning difficult and limiting adaptability to evolving content. To address this issue, we propose FlyThinker, an efficient "think-while-generating" framework for personalized long-form generation. FlyThinker employs a separate reasoning model that generates latent token-level reasoning in parallel, which is fused into the generation model to dynamically guide response generation. This design enables reasoning and generation to run concurrently, ensuring inference efficiency. In addition, the reasoning model is designed to depend only on previous responses rather than its own prior outputs, which preserves training parallelism across different positions-allowing all reasoning tokens for training data to be produced in a single forward pass like standard LLM training, ensuring training efficiency. Extensive experiments on real-world benchmarks demonstrate that FlyThinker achieves better personalized generation while keeping training and inference efficiency. Our code is available at https://github.com/wcb0219-sketch/FlyThinker.git.

cs.CL↗

NextAds: Towards Next-generation Personalized Video Advertising

With the rapid growth of online video consumption, video advertising has become increasingly dominant in the digital advertising landscape. Yet diverse users and viewing contexts makes one-size-fits-all ad creatives insufficient for consistent effectiveness, underlining the importance of personalization. In practice, most personalized video advertising systems follow a retrieval-based paradigm, selecting the optimal one from a small set of professionally pre-produced creatives for each user. Such static and finite inventories limits both the granularity and the timeliness of personalization, and prevents the creatives from being continuously refined based on online user feedback. Recent advances in generative AI make it possible to move beyond retrieval toward optimizing video creatives in a continuous space at serving time. In this light, we propose NextAds, a generation-based paradigm for next-generation personalized video advertising, and conceptualize NextAds with four core components. To enable comparable research progress, we formulate two representative tasks: personalized creative generation and personalized creative integration, and introduce corresponding lightweight benchmarks. To assess feasibility, we instantiate end-to-end pipelines for both tasks and conduct initial exploratory experiments, demonstrating that GenAI can generate and integrate personalized creatives with encouraging performance. Moreover, we discuss the key challenges and opportunities under this paradigm, aiming to provide actionable insights for both researchers and practitioners and to catalyze progress in personalized video advertising.

cs.IR↗

SPEED: Scalable, Precise, and Efficient Concept Erasure for Diffusion Models

Erasing concepts from large-scale text-to-image (T2I) diffusion models has become increasingly crucial due to the growing concerns over copyright infringement, offensive content, and privacy violations. In scalable applications, fine-tuning-based methods are time-consuming to precisely erase multiple target concepts, while real-time editing-based methods often degrade the generation quality of non-target concepts due to conflicting optimization objectives. To address this dilemma, we introduce SPEED, an efficient concept erasure approach that directly edits model parameters. SPEED searches for a null space, a model editing space where parameter updates do not affect non-target concepts, to achieve scalable and precise erasure. To facilitate accurate null space optimization, we incorporate three complementary strategies: Influence-based Prior Filtering (IPF) to selectively retain the most affected non-target concepts, Directed Prior Augmentation (DPA) to enrich the filtered retain set with semantically consistent variations, and Invariant Equality Constraints (IEC) to preserve key invariants during the T2I generation process. Extensive evaluations across multiple concept erasure tasks demonstrate that SPEED consistently outperforms existing methods in non-target preservation while achieving efficient and high-fidelity concept erasure, successfully erasing 100 concepts within only 5 seconds. Our code and models are available at: https://github.com/Ouxiang-Li/SPEED.

cs.CV↗

SASFT: Sparse Autoencoder-guided Supervised Finetuning to Mitigate Unexpected Code-Switching in LLMs

Large Language Models (LLMs) have impressive multilingual capabilities, but they suffer from unexpected code-switching, also known as language mixing, which involves switching to unexpected languages in the model response. This problem leads to poor readability and degrades the usability of model responses. However, existing work on this issue lacks a mechanistic analysis and shows limited effectiveness. In this paper, we first provide an in-depth analysis of unexpected code-switching using sparse autoencoders and find that when LLMs switch to a language, the features of that language exhibit excessive pre-activation values. Based on our findings, we propose $\textbf{S}$parse $\textbf{A}$utoencoder-guided $\textbf{S}$upervised $\textbf{F}$ine$\textbf{t}$uning (SASFT), which teaches LLMs to maintain appropriate pre-activation values of specific language features during training. Experiments on five models across three languages demonstrate that SASFT consistently reduces unexpected code-switching by more than 50\% compared to standard supervised fine-tuning, with complete elimination in one case. Moreover, SASFT maintains or even improves the models' performance on six multilingual benchmarks, showing its effectiveness in addressing code-switching while preserving multilingual capabilities. The code and data are available at https://github.com/Aatrox103/SASFT.

cs.CL↗

Easier Painting Than Thinking: Can Text-to-Image Models Set the Stage, but Not Direct the Play?

Text-to-image (T2I) generation aims to synthesize images from textual prompts, which jointly specify what must be shown and imply what can be inferred, which thus correspond to two core capabilities: \textbf{\textit{composition}} and \textbf{\textit{reasoning}}. Despite recent advances of T2I models in both composition and reasoning, existing benchmarks remain limited in evaluation. They not only fail to provide comprehensive coverage across and within both capabilities, but also largely restrict evaluation to low scene density and simple one-to-one reasoning. To address these limitations, we propose \textbf{\textsc{T2I-CoReBench}}, a comprehensive and complex benchmark that evaluates both composition and reasoning capabilities of T2I models. To ensure comprehensiveness, we structure composition around scene graph elements (\textit{instance}, \textit{attribute}, and \textit{relation}) and reasoning around the philosophical framework of inference (\textit{deductive}, \textit{inductive}, and \textit{abductive}), formulating a 12-dimensional evaluation taxonomy. To increase complexity, driven by the inherent real-world complexities, we curate each prompt with higher compositional density for composition and greater reasoning intensity for reasoning. To facilitate fine-grained and reliable evaluation, we also pair each evaluation prompt with a checklist that specifies individual \textit{yes/no} questions to assess each intended element independently. In statistics, our benchmark comprises 1,080 challenging prompts and around 13,500 checklist questions. Experiments across 38 current T2I models reveal that their composition capability still remains limited in high compositional scenarios, while the reasoning capability lags even further behind as a critical bottleneck, with all models struggling to infer implicit elements from prompts.

cs.CV↗

Less is More: Improving LLM Alignment via Preference Data Selection

Direct Preference Optimization (DPO) has emerged as a promising approach for aligning large language models with human preferences. While prior work mainly extends DPO from the aspect of the objective function, we instead improve DPO from the largely overlooked but critical aspect of data selection. Specifically, we address the issue of parameter shrinkage caused by noisy data by proposing a novel margin-maximization principle for dataset curation in DPO training. To further mitigate the noise in different reward models, we propose a Bayesian Aggregation approach that unifies multiple margin sources (external and implicit) into a single preference probability. Extensive experiments in diverse settings demonstrate the consistently high data efficiency of our approach. Remarkably, by using just 10\% of the Ultrafeedback dataset, our approach achieves 3\% to 8\% improvements across various Llama, Mistral, and Qwen models on the AlpacaEval2 benchmark. Furthermore, our approach seamlessly extends to iterative DPO, yielding a roughly 3\% improvement with 25\% online data, revealing the high redundancy in this presumed high-quality data construction manner. These results highlight the potential of data selection strategies for advancing preference optimization.

cs.LG↗

Bringing Reasoning to Generative Recommendation Through the Lens of Cascaded Ranking

Generative Recommendation (GR) has become a promising end-to-end approach with high FLOPS utilization for resource-efficient recommendation. Despite the effectiveness, we show that current GR models suffer from a critical \textbf{bias amplification} issue, where token-level bias escalates as token generation progresses, ultimately limiting the recommendation diversity and hurting the user experience. By comparing against the key factor behind the success of traditional multi-stage pipelines, we reveal two limitations in GR that can amplify the bias: homogeneous reliance on the encoded history, and fixed computational budgets that prevent deeper user preference understanding. To combat the bias amplification issue, it is crucial for GR to 1) incorporate more heterogeneous information, and 2) allocate greater computational resources at each token generation step. To this end, we propose CARE, a simple yet effective cascaded reasoning framework for debiased GR. To incorporate heterogeneous information, we introduce a progressive history encoding mechanism, which progressively incorporates increasingly fine-grained history information as the generation process advances. To allocate more computations, we propose a query-anchored reasoning mechanism, which seeks to perform a deeper understanding of historical information through parallel reasoning steps. We instantiate CARE on three GR backbones. Empirical results on four datasets show the superiority of CARE in recommendation accuracy, diversity, efficiency, and promising scalability. The codes and datasets are available at https://github.com/Linxyhaha/CARE.

cs.IR↗

GENERator: A Long-Context Generative Genomic Foundation Model

The rapid advancement of DNA sequencing has produced vast genomic datasets, yet interpreting and engineering genomic function remain fundamental challenges. Recent large language models have opened new avenues for genomic analysis, but existing approaches are often limited by restricted training scope, constrained generative capability, or prohibitive computational cost. We introduce GENErator, a generative genomic foundation model for long-context DNA modeling, with a context length of 98k nucleotides, pre-trained on 386 billion nucleotides of eukaryotic DNA. Without task-specific fine-tuning, GENERator exhibits strong intrinsic capabilities: unsupervised embedding analyses reveal phylogenetically coherent structure, and sequence recovery benchmarks demonstrate generative accuracy comparable to or exceeding state-of-the-art models with substantially improved computational efficiency. In a zero-shot setting, GENERator achieves competitive variant effect prediction performance relative to alignment-based methods, while remaining fully alignment-free and broadly applicable across species. With task-specific fine-tuning, the model attains leading performance on established genomic benchmarks. We further demonstrate practical generative applications. GENERator can generate protein-coding DNA sequences that translate into structurally plausible proteins and, through a prompt-guided design framework, design cis-regulatory elements with targeted activity profiles, including synthetic super-enhancers validated by high-throughput UMI-STARR-seq assays. Together, these results establish GENERator as an efficient and biologically grounded framework for genomic interpretation and programmable sequence design. Code and supplementary resources are available at https://github.com/GenerTeam/GENERator.

cs.CL↗

Towards Sample-Efficient and Stable Reinforcement Learning for LLM-based Recommendation

While Long Chain-of-Thought (Long CoT) reasoning has shown promise in Large Language Models (LLMs), its adoption for enhancing recommendation quality is growing rapidly. In this work, we critically examine this trend and argue that Long CoT is inherently ill-suited for the sequential recommendation domain. We attribute this misalignment to two primary factors: excessive inference latency and the lack of explicit cognitive reasoning patterns in user behavioral data. Driven by these observations, we propose pivoting away from the CoT structure to directly leverage its underlying mechanism: Reinforcement Learning (RL), to explore the item space. However, applying RL directly faces significant obstacles, notably low sample efficiency-where most actions fail to provide learning signals-and training instability. To overcome these limitations, we propose RISER, a novel Reinforced Item Space Exploration framework for Recommendation. RISER is designed to transform non-learnable trajectories into effective pairwise preference data for optimization. Furthermore, it incorporates specific strategies to ensure stability, including the prevention of redundant rollouts and the constraint of token-level update magnitudes. Extensive experiments on three real-world datasets show that RISER significantly outperforms competitive baselines, establishing a robust paradigm for RL-enhanced LLM recommendation. Our code will be available at https://anonymous.4open.science/r/RISER/.

cs.IR↗

Don't Start Over: A Cost-Effective Framework for Migrating Personalized Prompts Between LLMs

Personalization in Large Language Models (LLMs) often relies on user-specific soft prompts. However, these prompts become obsolete when the foundation model is upgraded, necessitating costly, full-scale retraining. To overcome this limitation, we propose the Prompt-level User Migration Adapter (PUMA), a lightweight framework to efficiently migrate personalized prompts across incompatible models. PUMA utilizes a parameter-efficient adapter to bridge the semantic gap, combined with a group-based user selection strategy to significantly reduce training costs. Experiments on three large-scale datasets show our method matches or even surpasses the performance of retraining from scratch, reducing computational cost by up to 98%. The framework demonstrates strong generalization across diverse model architectures and robustness in advanced scenarios like chained and aggregated migrations, offering a practical path for the sustainable evolution of personalized AI by decoupling user assets from the underlying models.

cs.CL↗

PERM: Psychology-grounded Empathetic Reward Modeling for Large Language Models

Large Language Models (LLMs) are increasingly deployed in human-centric applications, yet they often fail to provide substantive emotional support. While Reinforcement Learning (RL) has been utilized to enhance empathy of LLMs, existing reward models typically evaluate empathy from a single perspective, overlooking the inherently bidirectional interaction nature of empathy between the supporter and seeker as defined by Empathy Cycle theory. To address this limitation, we propose Psychology-grounded Empathetic Reward Modeling (PERM). PERM operationalizes empathy evaluation through a bidirectional decomposition: 1) Supporter perspective, assessing internal resonation and communicative expression; 2) Seeker perspective, evaluating emotional reception. Additionally, it incorporates a bystander perspective to monitor overall interaction quality. Extensive experiments on a widely-used emotional intelligence benchmark and an industrial daily conversation dataset demonstrate that PERM outperforms state-of-the-art baselines by over 10\%. Furthermore, a blinded user study reveals a 70\% preference for our approach, highlighting its efficacy in generating more empathetic responses. Our code, dataset, and models are available at https://github.com/ZhengWwwq/PERM.

cs.CL↗

FinDeepForecast: A Live Multi-Agent System for Benchmarking Deep Research Agents in Financial Forecasting

Deep Research (DR) Agents powered by advanced Large Language Models (LLMs) have fundamentally shifted the paradigm for completing complex research tasks. Yet, a comprehensive and live evaluation of their forecasting performance on real-world, research-oriented tasks in high-stakes domains (e.g., finance) remains underexplored. We introduce FinDeepForecast, the first live, end-to-end multi-agent system for automatically evaluating DR agents by continuously generating research-oriented financial forecasting tasks. This system is equipped with a dual-track taxonomy, enabling the dynamic generation of recurrent and non-recurrent forecasting tasks at both corporate and macro levels. With this system, we generate FinDeepForecastBench, a weekly evaluation benchmark over a ten-week horizon, encompassing 8 global economies and 1,314 listed companies, and evaluate 13 representative methods. Extensive experiments show that, while DR agents consistently outperform strong baselines, their performance still falls short of genuine forward-looking financial reasoning. We expect the proposed FinDeepForecast system to consistently facilitate future advancements of DR agents in research-oriented financial forecasting tasks. The benchmark and leaderboard are publicly available on the OpenFinArena Platform.

cs.MA↗

FinDeepResearch: Evaluating Deep Research Agents in Rigorous Financial Analysis

Deep Research (DR) agents, powered by advanced Large Language Models (LLMs), have recently garnered increasing attention for their capability in conducting complex research tasks. However, existing literature lacks a rigorous and systematic evaluation of DR Agent's capabilities in critical research analysis. To address this gap, we first propose HisRubric, a novel evaluation framework with a hierarchical analytical structure and a fine-grained grading rubric for rigorously assessing DR agents' capabilities in corporate financial analysis. This framework mirrors the professional analyst's workflow, progressing from data recognition to metric calculation, and finally to strategic summarization and interpretation. Built on this framework, we construct a FinDeepResearch benchmark that comprises 64 listed companies from 8 financial markets across 4 languages, encompassing a total of 15,808 grading items. We further conduct extensive experiments on the FinDeepResearch using 16 representative methods, including 6 DR agents, 5 LLMs equipped with both deep reasoning and search capabilities, and 5 LLMs with deep reasoning capabilities only. The results reveal the strengths and limitations of these approaches across diverse capabilities, financial markets, and languages, offering valuable insights for future research and development. The benchmark and evaluation code is publicly available at https://OpenFinArena.com/.

cs.CL↗