arXiv subjects

Fuping Wu

Publications and source records attributed to Fuping Wu.

23 records · Page 2Linked to original sources

arXiv2021

Unsupervised Domain Adaptation with Variational Approximation for Cardiac Segmentation

Unsupervised domain adaptation is useful in medical image segmentation. Particularly, when ground truths of the target images are not available, domain adaptation can train a target-specific model by utilizing the existing labeled images from other modalities. Most of the reported works mapped images of both the source and target domains into a common latent feature space, and then reduced their discrepancy either implicitly with adversarial training or explicitly by directly minimizing a discrepancy metric. In this work, we propose a new framework, where the latent features of both domains are driven towards a common and parameterized variational form, whose conditional distribution given the image is Gaussian. This is achieved by two networks based on variational auto-encoders (VAEs) and a regularization for this variational approximation. Both of the VAEs, each for one domain, contain a segmentation module, where the source segmentation is trained in a supervised manner, while the target one is trained unsupervisedly. We validated the proposed domain adaptation method using two cardiac segmentation tasks, i.e., the cross-modality (CT and MR) whole heart segmentation and the cross-sequence cardiac MR segmentation. Results show that the proposed method achieved better accuracies compared to two state-of-the-art approaches and demonstrated good potential for cardiac segmentation. Furthermore, the proposed explicit regularization was shown to be effective and efficient in narrowing down the distribution gap between domains, which is useful for unsupervised domain adaptation. Our code and data has been released via https://zmiclab.github.io/projects.html.

eess.IV↗

arXiv2020

Random Style Transfer based Domain Generalization Networks Integrating Shape and Spatial Information

Deep learning (DL)-based models have demonstrated good performance in medical image segmentation. However, the models trained on a known dataset often fail when performed on an unseen dataset collected from different centers, vendors and disease populations. In this work, we present a random style transfer network to tackle the domain generalization problem for multi-vendor and center cardiac image segmentation. Style transfer is used to generate training data with a wider distribution/ heterogeneity, namely domain augmentation. As the target domain could be unknown, we randomly generate a modality vector for the target modality in the style transfer stage, to simulate the domain shift for unknown domains. The model can be trained in a semi-supervised manner by simultaneously optimizing a supervised segmentation and an unsupervised style translation objective. Besides, the framework incorporates the spatial information and shape prior of the target by introducing two regularization terms. We evaluated the proposed framework on 40 subjects from the M\&Ms challenge2020, and obtained promising performance in the segmentation for data from unknown vendors and centers.

cs.CV↗

arXiv2019

Atrial Scar Quantification via Multi-scale CNN in the Graph-cuts Framework

Late gadolinium enhancement magnetic resonance imaging (LGE MRI) appears to be a promising alternative for scar assessment in patients with atrial fibrillation (AF). Automating the quantification and analysis of atrial scars can be challenging due to the low image quality. In this work, we propose a fully automated method based on the graph-cuts framework, where the potentials of the graph are learned on a surface mesh of the left atrium (LA) using a multi-scale convolutional neural network (MS-CNN). For validation, we have employed fifty-eight images with manual delineations. MS-CNN, which can efficiently incorporate both the local and global texture information of the images, has been shown to evidently improve the segmentation accuracy of the proposed graph-cuts based method. The segmentation could be further improved when the contribution between the t-link and n-link weights of the graph is balanced. The proposed method achieves a mean accuracy of 0.856 +- 0.033 and mean Dice score of 0.702 +- 0.071 for LA scar quantification. Compared with the conventional methods, which are based on the manual delineation of LA for initialization, our method is fully automatic and has demonstrated significantly better Dice score and accuracy (p < 0.01). The method is promising and can be useful in diagnosis and prognosis of AF.

cs.CV↗

arXiv2018

Atrial fibrosis quantification based on maximum likelihood estimator of multivariate images

We present a fully-automated segmentation and quantification of the left atrial (LA) fibrosis and scars combining two cardiac MRIs, one is the target late gadolinium-enhanced (LGE) image, and the other is an anatomical MRI from the same acquisition session. We formulate the joint distribution of images using a multivariate mixture model (MvMM), and employ the maximum likelihood estimator (MLE) for texture classification of the images simultaneously. The MvMM can also embed transformations assigned to the images to correct the misregistration. The iterated conditional mode algorithm is adopted for optimization. This method first extracts the anatomical shape of the LA, and then estimates a prior probability map. It projects the resulting segmentation onto the LA surface, for quantification and analysis of scarring. We applied the proposed method to 36 clinical data sets and obtained promising results (Accuracy: $0.809\pm .150$, Dice: $0.556\pm.187$). We compared the method with the conventional algorithms and showed an evidently and statistically better performance ($p<0.03$).

cs.CV↗

arXiv2018

Atrial scars segmentation via potential learning in the graph-cuts framework

Late Gadolinium Enhancement Magnetic Resonance Imaging (LGE MRI) emerged as a routine scan for patients with atrial fibrillation (AF). However, due to the low image quality automating the quantification and analysis of the atrial scars is challenging. In this study, we pro-posed a fully automated method based on the graph-cuts framework, where the potential of the graph is learned on a surface mesh of the left atrium (LA) using an equidistant projection and a Deep Neural Network (DNN). For validation, we employed 100 datasets with manual delineation. The results showed that the performance of the proposed method improved and converged with respect to the increased size of training patches, which provide important features of the structural and texture information learned by the DNN. The segmentation could be further improved when the contribution from the t-link and n-link is balanced, thanks to inter-relationship learned by the DNN for the graph-cuts algorithm. Compared with the published methods which mostly acquired manual delineation of the LA or LA wall, our method is fully automatic and demonstrated evidently better results with statistical significance. Finally, the accuracy of quantifying the scars assessed by the Dice score was 0.570. The results are promising and the method can be useful in diagnosis and prognosis of AF.

cs.CV↗