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Gabriel B. Mindlin

Publications and source records attributed to Gabriel B. Mindlin.

10 recordsLinked to original sources

Inferring hidden forcing in a biological oscillator using Kolmogorov-Arnold networks

Inferring the forces that drive a dynamical system from partial observations is a fundamental challenge across physics, particularly when distinct underlying mechanisms produce similar observable dynamics. Here we show that the effective muscular forcing underlying avian respiratory dynamics can be reconstructed from measurements of air-sac pressure alone. Using an interpretable learning framework based on Kolmogorov-Arnold networks, we infer the governing equations of the system directly from data and uncover a nontrivial structure in the underlying forcing that is not apparent from the pressure signal, which instead suggests a relaxation-like oscillation. The reconstructed dynamics predict a two-phase activation pattern within each respiratory cycle, which we independently validate through electromyographic recordings of expiratory muscles. These results demonstrate that data-driven reconstruction of dynamical laws can reveal hidden physical structure and provide access to unobserved driving variables, establishing a general route to infer latent forces in partially observed dynamical systems.

cs.LG

Nonlinear Biomechanical Resonances in Birdsong

Evolution has shaped animal bodies, yet to what extent biomechanical systems impose constraints and provide opportunities across different behaviors remains unclear. In birds, quiet breathing operates at a resonance of the respiratory biomechanics, but song, a behavior thought to be shaped by strong sexual selection, requires much higher breathing rates. Combining physiological recordings with a nonlinear biomechanical model, we show in canaries (Serinus canaria) that song production drives the system into a nonlinear regime that broadens the frequency range of amplified responses. This enhancement encompasses the full range of syllabic rates, with an average magnification of ~94% of the theoretical maximum. Thus, birds sing at a resonance, indicating that rapid song rhythms evolved to operate under shifting natural frequencies of the respiratory biomechanics. Our results illustrate a shared optimization strategy across behavioral states, reveal a deep connection between neural and biomechanical dynamical parameters and show that sexually selected displays may still rely on optimization strategies.

physics.bio-ph

On the application of Visibility Graphs in the Spectral Domain for Speaker Recognition

In this study, we explore the potential of visibility graphs in the spectral domain for speaker recognition. Adult participants were instructed to record vocalizations of the five Spanish vowels. For each vocalization, we computed the frequency spectrum considering the source-filter model of speech production, where formants are shaped by the vocal tract acting as a passive filter with resonant frequencies. Spectral profiles exhibited consistent intra-speaker characteristics, reflecting individual vocal tract anatomies, while showing variation between speakers. We then constructed visibility graphs from these spectral profiles and extracted various graph-theoretic metrics to capture their topological features. These metrics were assembled into feature vectors representing the five vowels for each speaker. Using an ensemble of decision trees trained on these features, we achieved high accuracy in speaker identification. Our analysis identified key topological features that were critical in distinguishing between speakers. This study demonstrates the effectiveness of visibility graphs for spectral analysis and their potential in speaker recognition. We also discuss the robustness of this approach, offering insights into its applicability for real-world speaker recognition systems. This research contributes to expanding the feature extraction toolbox for speaker recognition by leveraging the topological properties of speech signals in the spectral domain.

cs.SD

Siamese networks for Poincaré embeddings and the reconstruction of evolutionary trees

We present a method for reconstructing evolutionary trees from high-dimensional data, with a specific application to bird song spectrograms. We address the challenge of inferring phylogenetic relationships from phenotypic traits, like vocalizations, without predefined acoustic properties. Our approach combines two main components: Poincaré embeddings for dimensionality reduction and distance computation, and the neighbor joining algorithm for tree reconstruction. Unlike previous work, we employ Siamese networks to learn embeddings from only leaf node samples of the latent tree. We demonstrate our method's effectiveness on both synthetic data and spectrograms from six species of finches.

q-bio.PE

Reconstructing Attractors with Autoencoders

We show how to train an autoencoder to reconstruct an attractor from recorded footage, preserving the topology of the underlying phase space. This is explicitly demonstrated for the classic finite-amplitude Lorenz atmospheric convection problem.

nlin.AO

Invariant manifolds in stratified turbulence

We present a reduced system of 7 ordinary differential equations that captures the time evolution of spatial gradients of the velocity and the temperature in fluid elements of stratified turbulent flows. We show the existence of invariant manifolds (further reducing the system dimensionality), and compare the results with data stemming from direct numerical simulations of the full incompressible Boussinesq equations in the stably stratified case. Numerical results accumulate over the invariant anifolds of the reduced system, indicating the system lives at the brink of an instability. Finally, we study the stability of the reduced system, and show that it is compatible with recent observations in stratified turbulence of non-monotonic dependence of intermittency with stratification.

physics.flu-dyn

Resonant features in a forced population of excitatory neurons

In recent years, the study of coupled excitable oscillators has largely benefited from a new analytical technique developed by Ott and Antonsen. This technique allows to express the dynamics of certain macroscopic observable in the ensemble in terms of a reduced set of ordinary differential equations. This makes it possible to build low-dimensional models for the global activity of neural systems from first principles. We investigated the macroscopic response of a large set of excitatory neurons to different forcing strategies. We report resonant behavior, that depends on the heterogeneity between the units and their coupling strength. This contrasts with the type of response that an external forcing can elicit in simple and widely used phenomenological models.

nlin.AO

A Diagrammatic Representation of Phase Portraits and Bifurcation Diagrams of Two-Dimensional Dynamical Systems

We treat the problem of characterizing in a systematic way the qualitative features of two-dimensional dynamical systems. To that end, we construct a representation of the topological features of phase portraits by means of diagrams that discard their quantitative information. All codimension 1 bifurcations are naturally embodied in the possible ways of transitioning smoothly between diagrams. We introduce a representation of bifurcation curves in parameter space that guides the proposition of bifurcation diagrams compatible with partial information about the system.

nlin.CD

An excitable electronic circuit as a sensory neuron model

An electronic circuit device, inspired on the FitzHugh-Nagumo model of neuronal excitability, was constructed and shown to operate with characteristics compatible with those of biological sensory neurons. The nonlinear dynamical model of the electronics quantitatively reproduces the experimental observations on the circuit, including the Hopf bifurcation at the onset of tonic spiking. Moreover, we have implemented an analog noise generator as a source to study the variability of the spike trains. When the circuit is in the excitable regime, coherence resonance is observed. At sufficiently low noise intensity the spike trains have Poisson statistics, as in many biological neurons. The transfer function of the stochastic spike trains has a dynamic range of 6 dB, close to experimental values for real olfactory receptor neurons.

physics.bio-ph

Dynamics of learning in coupled oscillators tutored with delayed reinforcements

In this work we analyze the solutions of a simple system of coupled phase oscillators in which the connectivity is learned dynamically. The model is inspired in the process of learning of birdsong by oscine birds. An oscillator acts as the generator of a basic rhythm, and drives slave oscillators which are responsible for different motor actions. The driving signal arrives to each driven oscillator through two different pathways. One of them is a "direct" pathway. The other one is a "reinforcement" pathway, through which the signal arrives delayed. The coupling coefficients between the driving oscillator and the slave ones evolve in time following a Hebbian-like rule. We discuss the conditions under which a driven oscillator is capable of learning to lock to the driver. The resulting phase difference and connectivity is a function of the delay of the reinforcement. Around some specific delays, the system is capable to generate dramatic changes in the phase difference between the driver and the driven systems. We discuss the dynamical mechanism responsible for this effect, and possible applications of this learning scheme.

q-bio.NC