arXiv subjects

Gabriel Carmona

Publications and source records attributed to Gabriel Carmona.

3 recordsLinked to original sources

arXiv2026

Extended Depth-First Representations of $k^2$-trees

In this paper, we study static, computation-friendly, lossless compression formats for graphs, focusing on memory locality and operational efficiency of $k^2$-trees. We observe that their traditional level-wise layouts suffer from poor cache performance due to weak locality, especially in operations such as matrix-vector and matrix-matrix operations. To address this limitation, we propose four depth-first representations of $k^2$-trees: a plain depth-first layout (EDF-1), a balanced-parenthesis representation (BP), and their compressed variants (CEDF and CBP). We further introduce a linear-time compression method based on suffix and LCP arrays to identify and compress identical subtrees. We experimentally evaluate the execution time, the disk space, and the peak-memory usage of our approaches against classical level-wise $k^2$-trees and DFUDS-based representations across two real and one synthetic dataset (i.e., Web Graphs, Wikidata, and random adjacency matrices) over the above linear-algebra operations. Results show that our depth-first layouts are competitive and often superior than known approaches: CEDF achieves the best compression in most settings, EDF-1 and CEDF reduce the peak memory usage consistently, and performance varies by workload, with different layouts excelling in different operations and data regimes. Overall, this work demonstrates that depth-first layouts of $k^2$-trees provide a practical and efficient alternative to traditional layouts, improving both compression and computational performance in matrix operations.

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arXiv2025

Depth first representations of $k^2$-trees

The $k^2$-tree is a compact data structure designed to efficiently store sparse binary matrices by leveraging both sparsity and clustering of nonzero elements. This representation supports efficiently navigational operations and complex binary operations, such as matrix-matrix multiplication, while maintaining space efficiency. The standard $k^2$-tree follows a level-by-level representation, which, while effective, prevents further compression of identical subtrees and it si not cache friendly when accessing individual subtrees. In this work, we introduce some novel depth-first representations of the $k^2$-tree and propose an efficient linear-time algorithm to identify and compress identical subtrees within these structures. Our experimental results show that the use of a depth-first representations is a strategy worth pursuing: for the adjacency matrix of web graphs exploiting the presence of identical subtrees does improve the compression ratio, and for some matrices depth-first representations turns out to be faster than the standard $k^2$-tree in computing the matrix-matrix multiplication.

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arXiv2024

Engineering Rank/Select Data Structures for Large-Alphabet Strings

Large-alphabet strings are common in scenarios such as information retrieval and natural-language processing. The efficient storage and processing of such strings usually introduces several challenges that are not witnessed in small-alphabets strings. This paper studies the efficient implementation of one of the most effective approaches for dealing with large-alphabet strings, namely the \emph{alphabet-partitioning} approach. The main contribution is a compressed data structure that supports the fundamental operations $rank$ and $select$ efficiently. We show experimental results that indicate that our implementation outperforms the current realizations of the alphabet-partitioning approach. In particular, the time for operation $select$ can be improved by about 80%, using only 11% more space than current alphabet-partitioning schemes. We also show the impact of our data structure on several applications, like the intersection of inverted lists (where improvements of up to 60% are achieved, using only 2% of extra space), the representation of run-length compressed strings, and the distributed-computation processing of $rank$ and $select$ operations. In the particular case of run-length compressed strings, our experiments on the Burrows-Wheeler transform of highly-repetitive texts indicate that by using only about 0.98--1.09 times the space of state-of-the-art RLFM-indexes (depending on the text), the process of counting the number of occurrences of a pattern in a text can be carried out 1.23--2.33 times faster.

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