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Gabriel Mejia

Publications and source records attributed to Gabriel Mejia.

3 recordsLinked to original sources

Trainable Quantum Spectral Models for Partial Differential Equations

This work studies trainable quantum spectral models (QSMs) for solving linear partial differential equations (PDEs). Instead of learning solutions directly in physical space, QSMs learn the inverse differential operator in a spectral representation, embedding prior knowledge of the equation's natural basis. We systematically study the expressibility and trainability of several QSM architectures, ranging from near-diagonal to fully parameterized unitaries. In particular, we introduce a family of richer spectral models that interpolate between purely diagonal operators and fully mixing unitaries through a parameterized mixer controlled by $\epsilon$. Our results reveal an intermediate regime, typically around $\epsilon \approx 0.5$, where models achieve the best tradeoff between expressibility and trainability. Beyond this threshold, increased circuit complexity degrades convergence without improving accuracy. Among the architectures considered, models inspired by the inverse step of the Harrow-Hassidim-Lloyd (HHL) algorithm achieve the fastest training convergence while maintaining high solution fidelity. Numerical experiments on the (variable-coefficient) Poisson and Helmholtz equations show that trainable operations in the spectral basis outperform standard variational quantum circuits acting directly in the computational basis. These advantages appear through faster convergence, more stable gradients, and more accurate recovery of the reference solution spectrum, particularly through stronger suppression of spurious high-frequency components, even when the operator is not exactly diagonal in the chosen spectral basis. Our results identify operator-aware spectral representations as a promising route toward trainable and physically grounded quantum methods for scientific computing.

quant-ph

SpaRED benchmark: Enhancing Gene Expression Prediction from Histology Images with Spatial Transcriptomics Completion

Spatial Transcriptomics is a novel technology that aligns histology images with spatially resolved gene expression profiles. Although groundbreaking, it struggles with gene capture yielding high corruption in acquired data. Given potential applications, recent efforts have focused on predicting transcriptomic profiles solely from histology images. However, differences in databases, preprocessing techniques, and training hyperparameters hinder a fair comparison between methods. To address these challenges, we present a systematically curated and processed database collected from 26 public sources, representing an 8.6-fold increase compared to previous works. Additionally, we propose a state-of-the-art transformer based completion technique for inferring missing gene expression, which significantly boosts the performance of transcriptomic profile predictions across all datasets. Altogether, our contributions constitute the most comprehensive benchmark of gene expression prediction from histology images to date and a stepping stone for future research on spatial transcriptomics.

cs.CV

SEPAL: Spatial Gene Expression Prediction from Local Graphs

Spatial transcriptomics is an emerging technology that aligns histopathology images with spatially resolved gene expression profiling. It holds the potential for understanding many diseases but faces significant bottlenecks such as specialized equipment and domain expertise. In this work, we present SEPAL, a new model for predicting genetic profiles from visual tissue appearance. Our method exploits the biological biases of the problem by directly supervising relative differences with respect to mean expression, and leverages local visual context at every coordinate to make predictions using a graph neural network. This approach closes the gap between complete locality and complete globality in current methods. In addition, we propose a novel benchmark that aims to better define the task by following current best practices in transcriptomics and restricting the prediction variables to only those with clear spatial patterns. Our extensive evaluation in two different human breast cancer datasets indicates that SEPAL outperforms previous state-of-the-art methods and other mechanisms of including spatial context.

cs.CV