In-vivo imaging of the human thalamus: a comprehensive evaluation of structural magnetic resonance imaging approaches for thalamic nuclei differentiation at 7T
The thalamus is a subcortical structure of central importance to brain function, which is organized in smaller nuclei with specialized roles. Despite significant functional and clinical relevance, locating and distinguishing the different thalamic nuclei in vivo, non-invasively, has proved challenging with conventional imaging techniques, such as T$_{1}$ and T$_{2}$-weighted magnetic resonance imaging (MRI). This key limitation has prompted extensive research efforts, and several new candidate MRI sequences for thalamic imaging have been proposed, especially at 7T. However, studies to date have mainly been centered on individual techniques, and often focused on subsets of specific nuclei. It is now critical to evaluate which options are best for which nuclei, and which are globally the most informative. This work addresses these questions through a comprehensive evaluation of thalamic structural imaging techniques in humans at 7T, including several variants of T$_{1}$, T$_{2}$, T$_{2}$* and magnetic susceptibility-based contrasts. All images were obtained from the same participants, to allow direct comparisons without anatomical variability confounds. The different contrasts were qualitatively and quantitatively analyzed with dedicated approaches, referenced to well-established thalamic atlases. Overall, the analyses showed that quantitative susceptibility mapping (QSM) and T$_{1}$-weighted MP2RAGE tuned to maximize gray-to-white matter contrast are currently the most valuable options. The two contrasts display unique, complementary features and, together, enable the distinction of the majority of known nuclei. Likewise, their combined information could provide a powerful input for automatic segmentation approaches. To our knowledge, this study represents the most comprehensive assessment of structural MRI contrasts for thalamic imaging to date.