arXiv subjects

Gal Haspel

Publications and source records attributed to Gal Haspel.

4 recordsLinked to original sources

arXiv2026

Compiling molecular ultrastructure into neural dynamics

High-resolution brain imaging can now capture not just synapse locations but their molecular composition, with the cost of such mapping falling exponentially. Yet such ultrastructural data has so far told us little about local neuronal physiology - specifically, the parameters (e.g., synaptic efficacies, local conductances) that govern neural dynamics. We propose to translate molecularly annotated ultrastructure into physiology, introducing the concept of an ultrastructure-to-dynamics compiler: a learned mapping from molecularly annotated ultrastructure to simulator-ready, uncertainty-aware physiological parameters. The requirement is paired training data, with jointly acquired ultrastructure from imaging, and dynamical responses to perturbations from physiological experiments. With this data we can train models that predict local physiology directly from structure. Such a compiler would support biophysical simulations by turning anatomical maps into models of circuit dynamics, shifting structure-to-function from a descriptive program to a predictive one and opening routes to understanding neural computation and forecasting intervention effects.

q-bio.NC↗

arXiv2024

Expansion microscopy reveals neural circuit organization in genetic animal models

Expansion Microscopy is a super-resolution technique in which physically enlarging samples in an isotropic manner increases inter-molecular distances such that nano-scale structures can be resolved using light microscopy. This is particularly useful in neuroscience as many important structures are smaller than the diffraction limit. Since its invention in 2015, a variety of Expansion Microscopy protocols have been generated and applied to advance knowledge in many prominent organisms in neuroscience, including zebrafish, mice, Drosophila, and C. elegans. Here we review the last decade of Expansion Microscopy-enabled advances with a focus on neuroscience.

q-bio.NC↗

arXiv2023

The time is ripe to reverse engineer an entire nervous system: simulating behavior from neural interactions

Just like electrical engineers understand how microprocessors execute programs in terms of how transistor currents are affected by their inputs, neuroscientists want to understand behavior production in terms of how neuronal outputs are affected by their inputs and internal states. This dependency of neuronal outputs on inputs can be described by a state-dependent input-output (IO)-function. However, to reliably identify these IO-functions, we need to perturb each input and combinations of inputs while observing all the outputs. Here, we argue that such completeness is possible in C. elegans; a complete description that goes all the way from the activity of every neuron to predict behavior. The established and growing toolkit of optophysiology can non-invasively capture and control every neuron's activity and scale to countless experiments. The information from many such experiments can be pooled while capturing the inter-individual variability because neuronal identity and function are largely conserved across individuals. Just like electrical engineers use transistor IO-functions to simulate program execution, we argue that neuronal IO-functions could be used to simulate the impressive breadth of brain states and behaviors of C. elegans.

q-bio.NC↗

arXiv2020

A low power flexible dielectric barrier discharge disinfects surfaces and improves the action of hydrogen peroxide

There is an urgent need for disinfection and sterilization devices accessible to the public that can be fulfilled by innovative strategies for using cold atmospheric pressure plasmas. Here we explore and evaluate an approach combining a flexible printed circuit design of a dielectric barrier discharge (DBD) with an environmentally safe chemical reagent for surface decontamination from bacterial contaminants. The device operates in ambient air without any additional gas flow at a power density of about 0.5 W/cm^2. Using a 3% hydrogen peroxide solution as a model reagent we demonstrate improved reduction in the bacterial load of a surface contaminant of >6log10 in 90 seconds, about 3log10 and 2log10 faster compared to hydrogen peroxide alone and the flexible DBD alone, respectively, for the same treatment time. The synergistic action of the plasma bioactive properties and hydrogen peroxide result in a dramatic improvement of surface disinfection. This opens new possibilities for using the low power flexible DBD plasma sources for surface disinfection and decontamination.

physics.plasm-ph↗