arXiv subjects

Garnet Kin-Lic Chan

Publications and source records attributed to Garnet Kin-Lic Chan.

At least 55 records · Page 3Linked to original sources

arXiv2024

Tensor Network Computations That Capture Strict Variationality, Volume Law Behavior, and the Efficient Representation of Neural Network States

We introduce a change of perspective on tensor network states that is defined by the computational graph of the contraction of an amplitude. The resulting class of states, which we refer to as tensor network functions, inherit the conceptual advantages of tensor network states while removing computational restrictions arising from the need to converge approximate contractions. We use tensor network functions to compute strict variational estimates of the energy on loopy graphs, analyze their expressive power for ground-states, show that we can capture aspects of volume law time evolution, and provide a mapping of general feed-forward neural nets onto efficient tensor network functions. Our work expands the realm of computable tensor networks to ones where accurate contraction methods are not available, and opens up new avenues to use tensor networks.

quant-ph↗

arXiv2024

Quasi-Lindblad pseudomode theory for open quantum systems

We introduce a new framework to study the dynamics of open quantum systems with linearly coupled Gaussian baths. Our approach replaces the continuous bath with an auxiliary discrete set of pseudomodes with dissipative dynamics, but we further relax the complete positivity requirement in the Lindblad master equation and formulate a quasi-Lindblad pseudomode theory. We show that this quasi-Lindblad pseudomode formulation directly leads to a representation of the bath correlation function in terms of a complex weighted sum of complex exponentials, an expansion that is known to be rapidly convergent in practice and thus leads to a compact set of pseudomodes. The pseudomode representation is not unique and can differ by a gauge choice. When the global dynamics can be simulated exactly, the system dynamics is unique and independent of the specific pseudomode representation. However, the gauge choice may affect the stability of the global dynamics, and we provide an analysis of why and when the global dynamics can retain stability despite losing positivity. We showcase the performance of this formulation across various spectral densities in both bosonic and fermionic problems, finding significant improvements over conventional pseudomode formulations.

quant-ph↗

arXiv2024

Accurate QM/MM Molecular Dynamics for Periodic Systems in \textsc{GPU4PySCF} with Applications to Enzyme Catalysis

We present an implementation of the quantum mechanics/molecular mechanics (QM/MM) method for periodic systems using GPU accelerated QM methods, a distributed multipole formulation of the electrostatics, and a pseudo-bond treatment of the QM/MM boundary. We demonstrate that our method has well-controlled errors, stable self-consistent QM convergence, and energy-conserving dynamics. We further describe an application to the catalytic kinetics of chorismate mutase. Using an accurate hybrid functional reparametrized to coupled cluster energetics, our QM/MM simulations highlight the sensitivity in the calculated rate to the choice of quantum method, quantum region selection, and local protein conformation. Our work is provided through the open-source \textsc{PySCF} package using acceleration from the \textsc{GPU4PySCF} module.

physics.chem-ph↗

arXiv2024

Efficient Implementation of the Random Phase Approximation with Domain-based Local Pair Natural Orbitals

We present an efficient implementation of the random phase approximation (RPA) for molecular systems within the domain-based local pair natural orbital (DLPNO) framework. With optimized parameters, DLPNO-RPA achieves approximately 99.9% accuracy in the total correlation energy compared to a canonical implementation, enabling highly accurate reaction energies and potential energy surfaces to be computed while substantially reducing computational costs. As an application, we demonstrate the capability of DLPNO-RPA to efficiently calculate basis set-converged binding energies for a set of large molecules, with results showing excellent agreement with high-level reference data from both coupled cluster and diffusion Monte Carlo. This development paves the way for the routine use of RPA-based methods in molecular quantum chemistry.

physics.chem-ph↗

arXiv2024

Rapid initial state preparation for the quantum simulation of strongly correlated molecules

Studies on quantum algorithms for ground state energy estimation often assume perfect ground state preparation; however, in reality the initial state will have imperfect overlap with the true ground state. Here we address that problem in two ways: by faster preparation of matrix product state (MPS) approximations, and more efficient filtering of the prepared state to find the ground state energy. We show how to achieve unitary synthesis with a Toffoli complexity about $7 \times$ lower than that in prior work, and use that to derive a more efficient MPS preparation method. For filtering we present two different approaches: sampling and binary search. For both we use the theory of window functions to avoid large phase errors and minimise the complexity. We find that the binary search approach provides better scaling with the overlap at the cost of a larger constant factor, such that it will be preferred for overlaps less than about $0.003$. Finally, we estimate the total resources to perform ground state energy estimation of Fe-S cluster systems, including the FeMo cofactor by estimating the overlap of different MPS initial states with potential ground-states of the FeMo cofactor using an extrapolation procedure. {With a modest MPS bond dimension of 4000, our procedure produces an estimate of $\sim 0.9$ overlap squared with a candidate ground-state of the FeMo cofactor, producing a total resource estimate of $7.3 \times 10^{10}$ Toffoli gates; neglecting the search over candidates and assuming the accuracy of the extrapolation, this validates prior estimates that used perfect ground state overlap. This presents an example of a practical path to prepare states of high overlap in a challenging-to-compute chemical system.

quant-ph↗

arXiv2024

General Quantum Alchemical Free Energy Simulations via Hamiltonian Interpolation

We present an implementation of alchemical free energy simulations at the quantum mechanical level by directly interpolating the electronic Hamiltonian. The method is compatible with any level of electronic structure theory and requires only one quantum calculation for each molecular dynamics step in contrast to multiple energy evaluations that would be needed when interpolating the ground-state energies. We demonstrate the correctness and applicability of the technique by computing alchemical free energy changes of gas-phase molecules, with both nuclear and electron creation/annihilation. We also show an initial application to first-principles pKa calculation for solvated molecules where we quantum mechanically annihilate a bonded proton.

physics.chem-ph↗

arXiv2024

Quantum chemistry, classical heuristics, and quantum advantage

We describe the problems of quantum chemistry, the intuition behind classical heuristic methods used to solve them, a conjectured form of the classical complexity of quantum chemistry problems, and the subsequent opportunities for quantum advantage. This article is written for both quantum chemists and quantum information theorists. In particular, we attempt to summarize the domain of quantum chemistry problems as well as the chemical intuition that is applied to solve them within concrete statements (such as a classical heuristic cost conjecture and a classification of different avenues for quantum advantage) in the hope that this may stimulate future analysis.

quant-ph↗

arXiv2024

Introducing GPU-acceleration into the Python-based Simulations of Chemistry Framework

We introduce the first version of GPU4PySCF, a module that provides GPU acceleration of methods in PySCF. As a core functionality, this provides a GPU implementation of two-electron repulsion integrals (ERIs) for contracted basis sets comprising up to g functions using Rys quadrature. As an illustration of how this can accelerate a quantum chemistry workflow, we describe how to use the ERIs efficiently in the integral-direct Hartree-Fock Fock build and nuclear gradient construction. Benchmark calculations show a significant speedup of two orders of magnitude with respect to the multi-threaded CPU Hartree-Fock code of PySCF, and performance comparable to other GPU-accelerated quantum chemical packages including GAMESS and QUICK on a single NVIDIA A100 GPU.

physics.comp-ph↗

arXiv2024

Tensor network influence functionals in the continuous-time limit: connections to quantum embedding, bath discretization, and higher-order time propagation

We describe two developments of tensor network influence functionals (in particular, influence functional matrix product states (IF-MPS)) for quantum impurity dynamics within the fermionic setting of the Anderson impurity model. The first provides the correct extension of the IF-MPS to continuous time by introducing a related mathematical object, the boundary influence functional MPS. The second connects the dynamics described by a compressed IF-MPS to that of a quantum embedding method with a time-dependent effective bath undergoing nonunitary dynamics. Using these concepts, we implement higher-order time propagators for the quench dynamics of the Anderson impurity model within the boundary IF-MPS formalism. The calculations illustrate the ability of the current formulation to efficiently remove the time step error in standard discrete-time IF-MPS implementations as well as to interface with state vector propagation techniques. They also show the advantages of IF-MPS dynamics, with its associated highly compact effective bath dynamics, over state vector propagation with a static bath discretization.

cond-mat.str-el↗

arXiv2024

Correlation Functions From Tensor Network Influence Functionals: The Case of the Spin-Boson Model

We investigate the application of matrix product state (MPS) representations of the influence functionals (IF) for the calculation of real-time equilibrium correlation functions in open quantum systems. Focusing specifically on the unbiased spin-boson model, we explore the use of IF-MPSs for complex time propagation, as well as IF-MPSs for constructing correlation functions in the steady state. We examine three different IF approaches: one based on the Kadanoff-Baym contour targeting correlation functions at all times, one based on a complex contour targeting the correlation function at a single time, and a steady state formulation which avoids imaginary or complex times, while providing access to correlation functions at all times. We show that within the IF language, the steady state formulation provides a powerful approach to evaluate equilibrium correlation functions.

physics.chem-ph↗

arXiv2024

Performant Automatic Differentiation of Local Coupled Cluster Theories: Response Properties and Ab Initio Molecular Dynamics

In this work, we introduce a differentiable implementation of the local natural orbital coupled cluster (LNOCC) method within the automatic differentiation framework of the PySCFAD package. The implementation is comprehensively tuned for enhanced performance, which enables the calculation of first-order static response properties on medium-sized molecular systems using coupled cluster theory with single, double, and perturbative triple excitations [CCSD(T)]. We evaluate the accuracy of our method by benchmarking it against the canonical CCSD(T) reference for nuclear gradients, dipole moments, and geometry optimizations. In addition, we demonstrate the possibility of property calculations for chemically interesting systems through the computation of bond orders and Mössbauer spectroscopy parameters for a [NiFe]-hydrogenase active site model, along with the simulation of infrared (IR) spectra via ab initio LNO-CC molecular dynamics for a protonated water hexamer.

physics.chem-ph↗

arXiv2024

Benchmarking the Exponential Ansatz for the Holstein model

Polarons are quasiparticles formed as a result of lattice distortions induced by charge carriers. The single-electron Holstein model captures the fundamentals of single polaron physics. We examine the power of the exponential ansatz for the polaron ground-state wavefunction in its coupled cluster, canonical transformation, and (canonically transformed) perturbative variants across the parameter space of the Holstein model. Our benchmark serves to guide future developments of polaron wavefunctions beyond the single-electron Holstein model.

cond-mat.mtrl-sci↗

arXiv2024

Adiabatic quantum imaginary time evolution

We introduce an adiabatic state preparation protocol which implements quantum imaginary time evolution under the Hamiltonian of the system. Unlike the original quantum imaginary time evolution algorithm, adiabatic quantum imaginary time evolution does not require quantum state tomography during its runtime, and unlike standard adiabatic state preparation, the final Hamiltonian is not the system Hamiltonian. Instead, the algorithm obtains the adiabatic Hamiltonian by integrating a classical differential equation that ensures that one follows the imaginary time evolution state trajectory. We introduce some heuristics that allow this protocol to be implemented on quantum architectures with limited resources. We explore the performance of this algorithm via classical simulations in a one-dimensional spin model and highlight essential features that determine its cost, performance, and implementability for longer times, and compare to the original quantum imaginary time evolution for ground-state preparation. More generally, our algorithm expands the range of states accessible to adiabatic state preparation methods beyond those that are expressed as ground-states of simple explicit Hamiltonians.

quant-ph↗

arXiv2024

Convergence Analysis of the Stochastic Resolution of Identity: Comparing Hutchinson to Hutch++ for the Second-Order Green's Function

Stochastic orbital techniques offer reduced computational scaling and memory requirements to describe ground and excited states at the cost of introducing controlled statistical errors. Such techniques often rely on two basic operations, stochastic trace estimation and stochastic resolution of identity, both of which lead to statistical errors that scale with the number of stochastic realizations ($N_ξ$) as $\sqrt{N_ξ^{-1}}$. Reducing the statistical errors without significantly increasing $N_ξ$ has been challenging and is central to the development of efficient and accurate stochastic algorithms. In this work, we build upon recent progress made to improve stochastic trace estimation based on the ubiquitous Hutchinson's algorithm and propose a two-step approach for the stochastic resolution of identity, in the spirit of the Hutch++ method. Our approach is based on employing a randomized low-rank approximation followed by a residual calculation, resulting in statistical errors that scale much better than $\sqrt{N_ξ^{-1}}$. We implement the approach within the second-order Born approximation for the self-energy in the computation of neutral excitations and discuss three different low-rank approximations for the two-body Coulomb integrals. Tests on a series of hydrogen dimer chains with varying lengths demonstrate that the Hutch++-like approximations are computationally more efficient than both deterministic and purely stochastic (Hutchinson) approaches for low error thresholds and intermediate system sizes. Notably, for arbitrarily large systems, the Hutchinson-like approximation outperforms both deterministic and Hutch++-like methods.

physics.chem-ph↗

arXiv2024

Fast and converged classical simulations of evidence for the utility of quantum computing before fault tolerance

A recent quantum simulation of observables of the kicked Ising model on 127 qubits implemented circuits that exceed the capabilities of exact classical simulation. We show that several approximate classical methods, based on sparse Pauli dynamics and tensor network algorithms, can simulate these observables orders of magnitude faster than the quantum experiment, and can also be systematically converged beyond the experimental accuracy. Our most accurate technique combines a mixed Schrödinger and Heisenberg tensor network representation with the Bethe free entropy relation of belief propagation to compute expectation values with an effective wavefunction-operator sandwich bond dimension >16,000,000, achieving an absolute accuracy, without extrapolation, in the observables of <0.01, which is converged for many practical purposes. We thereby identify inaccuracies in the experimental extrapolations and suggest how future experiments can be implemented to increase the classical hardness.

quant-ph↗

arXiv2023

AB-G$_0$W$_0$: A practical G$_0$W$_0$ method without frequency integration based on an auxiliary boson expansion

Common G$_0$W$_0$ implementations rely on numerical or analytical frequency integration to determine the G$_0$W$_0$ self-energy, which results in a variety of practical complications. Recently, we demonstrated an exact connection between the G$_0$W$_0$ approximation and equation-of-motion (EOM) quantum chemistry approaches [J. Chem. Phys., 158, 124123 (2023)]. Based on this connection, we propose a new method to determine G$_0$W$_0$ quasiparticle energies which completely avoids frequency integration and its associated problems. To achieve this, we make use of an auxiliary boson (AB) expansion. We name the new approach AB-G$_0$W$_0$ and demonstrate its practical applicability in a range of molecular problems.

physics.chem-ph↗

arXiv2023

Multireference protonation energetics of a dimeric model of nitrogenase iron-sulfur clusters

Characterizing the electronic structure of the iron--sulfur clusters in nitrogenase is necessary to understand their role in the nitrogen fixation process. One challenging task is to determine the protonation state of the intermediates in the nitrogen fixing cycle. Here, we use a dimeric iron--sulfur model to study relative energies of protonation at C, S or Fe. Using a composite method based on coupled cluster and density matrix renormalization group energetics, we converge the relative energies of four protonated configurations with respect to basis set and correlation level. We find that accurate relative energies require large basis sets, as well as a proper treatment of multireference and relativistic effects. We have also tested ten density functional approximations for these systems. Most of them give large errors in the relative energies. The best performing functional in this system is B3LYP, which gives mean absolute and maximum errors of only 10 and 13 kJ/mol with respect to our correlated wavefunction estimates, respectively. Our work provides benchmark results for the calibration of new approximate electronic structure methods and density functionals for these problems.

physics.chem-ph↗

arXiv2023

Block2: a comprehensive open source framework to develop and apply state-of-the-art DMRG algorithms in electronic structure and beyond

Block2 is an open source framework to implement and perform density matrix renormalization group and matrix product state algorithms. Out-of-the-box it supports the eigenstate, time-dependent, response, and finite-temperature algorithms. In addition, it carries special optimizations for ab initio electronic structure Hamiltonians and implements many quantum chemistry extensions to the density matrix renormalization group, such as dynamical correlation theories. The code is designed with an emphasis on flexibility, extensibility, and efficiency, and to support integration with external numerical packages. Here we explain the design principles and currently supported features and present numerical examples in a range of applications.

physics.chem-ph↗