arXiv subjects

Gautam I. Menon

Publications and source records attributed to Gautam I. Menon.

34 records · Page 2Linked to original sources

arXiv2007

Phase Transitions in Pressurised Semiflexible Polymer Rings

We propose and study a model for the equilibrium statistical mechanics of a pressurised semiflexible polymer ring. The Hamiltonian has a term which couples to the algebraic area of the ring and a term which accounts for bending (semiflexibility). The model allows for self-intersections. Using a combination of Monte Carlo simulations, Flory-type scaling theory, mean-field approximations and lattice enumeration techniques, we obtain a phase diagram in which collapsed and inflated phases are separated by a continuous transition. The scaling properties of the averaged area as a function of the number of units of the ring are derived. For large pressures, the asymptotic behaviour of the area is calculated for both discrete and lattice versions of the model. For small pressures, the area is obtained through a mapping onto the quantum mechanical problem of an electron moving in a magnetic field. The simulation data agree well with the analytic and mean-field results.

cond-mat.stat-mech↗

arXiv2006

Driven Disordered Periodic Media with an Underlying Structural Phase Transition

We investigate the driven states of a two-dimensional crystal whose ground state can be tuned through a square-triangular transition. The depinning of such a system from a quenched random background potential occurs via a complex sequence of dynamical states, which include plastic flow states, hexatics, dynamically stabilized triangle and square phases and intermediate regimes of phase coexistence. These results are relevant to transport experiments in the mixed phase of several superconductors which exhibit such structural transitions as well as to driven colloidal systems whose interactions can be tuned via surface modifications.

cond-mat.stat-mech↗

arXiv2006

Collective Effects in Models for Interacting Molecular Motors and Motor-Microtubule Mixtures

Three problems in the statistical mechanics of models for an assembly of molecular motors interacting with cytoskeletal filaments are reviewed. First, a description of the hydrodynamical behaviour of density-density correlations in fluctuating ratchet models for interacting molecular motors is outlined. Numerical evidence indicates that the scaling properties of dynamical behavior in such models belong to the KPZ universality class. Second, the generalization of such models to include boundary injection and removal of motors is provided. In common with known results for the asymmetric exclusion processes, simulations indicate that such models exhibit sharp boundary driven phase transitions in the thermodynamic limit. In the third part of this paper, recent progress towards a continuum description of pattern formation in mixtures of motors and microtubules is described, and a non-equilibrium ``phase-diagram'' for such systems discussed.

cond-mat.stat-mech↗

arXiv2006

The Glass Transition and Liquid-Gas Spinodal Boundaries of Metastable Liquids

A liquid can exist under conditions of thermodynamic stability or metastability within boundaries defined by the liquid-gas spinodal and the glass transition line. The relationship between these boundaries has been investigated previously using computer simulations, the energy landscape formalism, and simplified model calculations. We calculate these stability boundaries semi-analytically for a model glass forming liquid, employing accurate liquid state theory and a first-principles approach to the glass transition. These boundaries intersect at a finite temperature, consistent with previous simulation-based studies.

cond-mat.soft↗

arXiv2005

Distribution Functions, Loop Formation Probabilities and Force-Extension Relations in a Model for Short Double-Stranded DNA Molecules

We obtain, using transfer matrix methods, the distribution function $P(R)$ of the end-to-end distance, the loop formation probability and force-extension relations in a model for short double-stranded DNA molecules. Accounting for the appearance of ``bubbles'', localized regions of enhanced flexibility associated with the opening of a few base pairs of double-stranded DNA in thermal equilibrium, leads to dramatic changes in $P(R)$ and unusual force-extension curves. An analytic formula for the loop formation probability in the presence of bubbles is proposed. For short {\em heterogeneous} chains, we demonstrate a strong dependence of loop formation probabilities on sequence, as seen in recent experiments.

cond-mat.soft↗

arXiv2004

Probing Disordered Substrates by Imaging the Adsorbate in its Fluid Phase

Several recent imaging experiments access the equilibrium density profiles of interacting particles confined to a two-dimensional substrate. When these particles are in a fluid phase, we show that such data yields precise information regarding substrate disorder as reflected in one-point functions and two-point correlations of the fluid. Using Monte Carlo simulations and replica generalizations of liquid state theories, we extract unusual two-point correlations of time-averaged density inhomogeneities induced by disorder. Distribution functions such as these have not hitherto been measured but should be experimentally accessible.

cond-mat.dis-nn↗

arXiv2003

Asters, Spirals and Vortices in Mixtures of Motors and Microtubules: The Effects of Confining Geometries on Pattern Formation

We model the effects of confinement on the stable self-organized patterns obtained in the non-equilibrium steady states of mixtures of molecular motors and microtubules. In experiments [Nedelec et al. Nature, 389, 305 (1997); Surrey et al., Science, 292, 1167 (2001)] performed in a quasi-two-dimensional confined geometry, microtubules are oriented by complexes of motor proteins. This interaction yields a variety of patterns, including arangements of asters, vortices and disordered configurations. We model this system via a two-dimensional vector field describing the local coarse-grained microtubule orientation and two scalar density fields associated to molecular motors. These scalar fields describe motors which either attach to and move along microtubules or diffuse freely within the solvent. Transitions between single aster, spiral and vortex states are obtained as a consequence of confinement, as parameters in our model are varied. We also obtain other novel states, including ``outward asters'', distorted vortices and lattices of asters on confined systems. We calculate the steady state distribution of bound and free motors in aster and vortex configurations of microtubules and compare these to our simulation results, providing qualitative arguments for the stability of different patterns in various regimes of parameter space. We also study the role of crowding or ``saturation'' effects on the density profiles of motors in asters, discussing the role of such effects in stabilizing single asters.

cond-mat.stat-mech↗

arXiv2003

Self-organized Pattern Formation in Motor-Microtubule Mixtures

We propose and study a hydrodynamic model for pattern formation in mixtures of molecular motors and microtubules. The steady state patterns we obtain in different regimes of parameter space include arrangements of vortices and asters separately as well as aster-vortex mixtures and fully disordered states. Such stable steady states are observed in experiments in vitro. The sequence of patterns obtained in the experiments can be associated with smooth trajectories in a non-equilibrium phase diagram for our model.

cond-mat.stat-mech↗

arXiv2002

Persistence at the onset of spatiotemporal intermittency in coupled map lattices

We study persistence in coupled circle map lattices at the onset of spatiotemporal intermittency, an onset which marks a continuous transition, in the universality class of directed percolation, to a unique absorbing state. We obtain a local persistence exponent of theta_l = 1.49 +- 0.02 at this transition, a value which closely matches values for theta_l obtained in stochastic models of directed percolation. This result constitutes suggestive evidence for the universality of persistence exponents at the directed percolation transition. Given that many experimental systems are modelled accurately by coupled map lattices, experimental measurements of this persistence exponent may be feasible.

cond-mat.stat-mech↗

arXiv2002

Two-Component Fluid Membranes Near Repulsive Walls: Linearized Hydrodynamics of Equilibrium and Non-equilibrium States

We study the linearized hydrodynamics of a two-component fluid membrane near a repulsive wall, via a model which incorporates curvature- concentration coupling as well as hydrodynamic interactions. This model is a simplified version of a recently proposed one [J.-B. Manneville et al. Phys. Rev. E, 64, 021908 (2001)] for non-equilibrium force-centres embedded in fluid membranes, such as light-activated bacteriorhodopsin pumps incorporated in phospholipid (EPC) bilayers. The pump/membrane system is modeled as an impermeable, two-component bilayer fluid membrane in the presence of an ambient solvent, in which one component, representing active pumps, is described in terms of force dipoles displaced with respect to the bilayer midpoint. We first discuss the case in which such pumps are rendered inactive, computing the mode structure in the bulk as well as the modification of hydrodynamic properties by the presence of a nearby wall. We then discuss the fluctuations and mode structure in steady state of active two-component membranes near a repulsive wall. We find that proximity to the wall smoothens membrane height fluctuations in the stable regime, resulting in a logarithmic scaling of the roughness even for initially tensionless membranes. This explicitly non-equilibrium result, a consequence of the incorporation of curvature-concentration coupling in our treatment, also indicates that earlier scaling arguments which obtained an increase in the roughness of active membranes near repulsive walls may need to be reevaluated.

cond-mat.soft↗

arXiv2002

Phase Behavior of Type-II Superconductors with Quenched Point Pinning Disorder: A Phenomenological Proposal

A general phenomenology for phase behaviour in the mixed phase of type-II superconductors with weak point pinning disorder is outlined. We propose that the ``Bragg glass'' phase generically transforms via two separate thermodynamic phase transitions into a disordered liquid on increasing the temperature. The first transition is into a glassy phase, topologically disordered at the largest length scales; current evidence suggests that it lacks the long-ranged phase correlations expected of a ``vortex glass''. This phase has a significant degree of short-ranged translational order, unlike the disordered liquid, but no quasi-long range order, in contrast to the Bragg glass. This glassy phase, which we call a ``multi-domain glass'', is confined to a narrow sliver at intermediate fields, but broadens out both for much larger and much smaller field values. The multi-domain glass may be a ``hexatic glass''; alternatively, its glassy properties may originate in the replica symmetry breaking envisaged in recent theories of the structural glass transition. Estimates for translational correlation lengths in the multi-domain glass indicate that they can be far larger than the interline spacing for weak disorder, suggesting a plausible mechanism by which signals of a two-step transition can be obscured. Calculations of the Bragg glass-multi-domain glass and the multi-domain glass-disordered liquid phase boundaries are presented and compared to experimental data. We argue that these proposals provide a unified picture of the available experimental data on both high-T$_c$ and low-T$_c$ materials, simulations and current theoretical understanding.

cond-mat.supr-con↗

arXiv2002

A New Phenomenology for the Disordered Mixed Phase

A universal phase diagram for type-II superconductors with weak point pinning disorder is proposed. In this phase diagram, two thermodynamic phase transitions generically separate a ``Bragg glass'' from the disordered liquid. Translational correlations in the intervening ``multi-domain glass'' phase are argued to exhibit a significant degree of short-range order. This phase diagram differs significantly from the currently accepted one but provides a more accurate description of experimental data on high and low-T$_c$ materials, simulations and current theoretical understanding.

cond-mat.supr-con↗

arXiv2002

A Biologically Inspired Ratchet Model of Two Coupled Brownian Motors

A ratchet model for coupled Brownian motors, inspired by the motion of individual two-headed molecular motors on cytoskeletal filaments, is proposed. Such motors are modeled as two elastically coupled Brownian particles, each of which moves in a flashing ratchet potential. The ratchet potentials felt by the individual particles are anti-correlated, modeling the successive binding and unbinding of the two motor heads to the filament. We obtain, via Langevin simulations, steady-state currents as functions of noise strength, the equilibrium separation of the particles and the rate of switching between potential states. We observe an enhanced current due to coupling, noise induced stability and phase-locked behaviour in the deterministic regime. A qualitative understanding of these features is provided.

cond-mat.soft↗

arXiv2001

Exact Persistence Exponent for One-dimensional Potts Models with Parallel Dynamics

We obtain θ_p(q) = 2θ_s(q) for one-dimensional q-state ferromagnetic Potts models evolving under parallel dynamics at zero temperature from an initially disordered state, where θ_p(q) is the persistence exponent for parallel dynamics and θ_s(q) = -{1/8}+ \frac{2}{π^2}[cos^{-1}{(2-q)/q\sqrt{2}}]^2 [PRL, {\bf 75}, 751, (1995)], the persistence exponent under serial dynamics. This result is a consequence of an exact, albeit non-trivial, mapping of the evolution of configurations of Potts spins under parallel dynamics to the dynamics of two decoupled reaction diffusion systems.

cond-mat.stat-mech↗

arXiv1999

Muon-Spin Rotation Spectra in the Mixed Phase of High-T_c Superconductors : Thermal Fluctuations and Disorder Effects

We study muon-spin rotation (muSR) spectra in the mixed phase of highly anisotropic layered superconductors, specifically Bi_2+xSr_2-xCaCu_2O_8+delta (BSCCO), by modeling the fluid and solid phases of pancake vortices using liquid-state and density functional methods. The role of thermal fluctuations in causing motional narrowing of muSR lineshapes is quantified in terms of a first-principles theory of the flux-lattice melting transition. The effects of random point pinning are investigated using a replica treatment of liquid state correlations and a replicated density functional theory. Our results indicate that motional narrowing in the pure system, although substantial, cannot account for the remarkably small linewidths obtained experimentally at relatively high fields and low temperatures. We find that satisfactory agreement with the muSR data for BSCCO in this regime can be obtained through the ansatz that this ``phase'' is characterized by frozen short-range positional correlations reflecting the structure of the liquid just above the melting transition. This proposal is consistent with recent suggestions of a ``pinned liquid'' or ``glassy'' state of pancake vortices in the presence of pinning disorder. Our results for the high-temperature liquid phase indicate that measurable linewidths may be obtained in this phase as a consequence of density inhomogeneities induced by the pinning disorder. The results presented here comprise a unified, first-principles theoretical treatment of muSR spectra in highly anisotropic layered superconductors in terms of a controlled set of approximations.

cond-mat.supr-con↗

arXiv1997

Conservation Laws and Integrability of a One-dimensional Model of Diffusing Dimers

We study a model of assisted diffusion of hard-core particles on a line. The model shows strongly ergodicity breaking : configuration space breaks up into an exponentially large number of disconnected sectors. We determine this sector-decomposion exactly. Within each sector the model is reducible to the simple exclusion process, and is thus equivalent to the Heisenberg model and is fully integrable. We discuss additional symmetries of the equivalent quantum Hamiltonian which relate observables in different sectors. In some sectors, the long-time decay of correlation functions is qualitatively different from that of the simple exclusion process. These decays in different sectors are deduced from an exact mapping to a model of the diffusion of hard-core random walkers with conserved spins, and are also verified numerically. We also discuss some implications of the existence of an infinity of conservation laws for a hydrodynamic description.

cond-mat.stat-mech↗