SearcharxivSearch

arXiv subjects

Gavin Shaddick

Publications and source records attributed to Gavin Shaddick.

11 recordsLinked to original sources

Highly Multivariate Large-scale Spatial Stochastic Processes -- A Cross-Markov Random Field Approach

Key challenges in the analysis of highly multivariate large-scale spatial stochastic processes, where both the number of components (p) and spatial locations (n) can be large, include achieving maximal sparsity in the joint precision matrix, ensuring efficient computational cost for its generation, accommodating asymmetric cross-covariance in the joint covariance matrix, and delivering scientific interpretability. We propose a cross-MRF model class, consisting of a mixed spatial graphical model framework and cross-MRF theory, to collectively address these challenges in one unified framework across two modelling stages. The first stage exploits scientifically informed conditional independence (CI) among p component fields and allows for a step-wise parallel generation of joint covariance and precision matrix, enabling a simultaneous accommodation of asymmetric cross-covariance in joint covariance matrix and sparsity in joint precision matrix. The second stage extends the first-stage CI to doubly CI among both p and n and unearths the cross-MRF via an extended Hammersley-Clifford theorem for multivariate spatial stochastic processes. This results in the sparsest possible representation of the joint precision matrix and ensures its lowest generation complexity. We demonstrate with 1D simulated comparative studies and 2D real-world data.

stat.ME

On the Stochasticity of Reanalysis Outputs of 4D-Var

This work is motivated by the ECMWF CAMS reanalysis data, a valuable resource for researchers in environmental-related areas, as they contain the most updated atmospheric composition information on a global scale. Unlike observational data obtained from monitoring equipment, such reanalysis data are produced by computers via a 4D-Var data assimilation mechanism, thus their stochastic property remains largely unclear. Such lack of knowledge in turn limits their utility scope and hinders them from wider and more flexible statistical usages, especially spatio-temporal modelling except for uncertainty quantification and data fusion. Therefore, this paper studies the stochastic property of these reanalysis outputs data. We used measure theory and proved the tangible existence of spatial and temporal stochasticity associated with these reanalysis data and revealed that they are essentially realisations from digitised versions of real-world hidden spatial and/or temporal stochastic processes. This means we can treat the reanalysis outputs data the same as observational data in practice and thus ensures more flexible spatio-temporal stochastic methodologies apply to them. We also objectively analysed different types of errors in the reanalysis data and deciphered their mutual dependence/independence, which together give clear and definite guidance on the modelling of error terms. The results of this study also serve as a solid stepping stone for spatio-temporal modellers and environmental AI researchers to embark on their research directly with these reanalysis outputs data using stochastic models.

math.ST

Data integration for high-resolution, continental-scale estimation of air pollution concentrations

Air pollution constitutes the highest environmental risk factor in relation to heath. In order to provide the evidence required for health impact analyses, to inform policy and to develop potential mitigation strategies comprehensive information is required on the state of air pollution. Information on air pollution traditionally comes from ground monitoring (GM) networks but these may not be able to provide sufficient coverage and may need to be supplemented with information from other sources (e.g. chemical transport models; CTMs). However, these may only be available on grids and may not capture micro-scale features that may be important in assessing air quality in areas of high population. We develop a model that allows calibration between multiple data sources available at different levels of support by allowing the coefficients of calibration equations to vary over space and time, enabling downscaling where the data is sufficient to support it. The model is used to produce high-resolution (1km $\times$ 1km) estimates of NO$_2$ and PM$_{2.5}$ across Western Europe for 2010-2016. Concentrations of both pollutants are decreasing during this period, however there remain large populations exposed to levels exceeding the WHO Air Quality Guidelines and thus air pollution remains a serious threat to health.

stat.AP

Global Household Energy Model: A Multivariate Hierarchical Approach to Estimating Trends in the Use of Polluting and Clean Fuels for Cooking

In 2017 an estimated 3 billion people used polluting fuels and technologies as their primary cooking solution, with 3.8 million deaths annually attributed to household exposure to the resulting fine particulate matter air pollution. Currently, health burdens are calculated using aggregations of fuel types, e.g. solid fuels, as country-level estimates of the use of specific fuel types, e.g. wood and charcoal, are unavailable. To expand the knowledge base about impacts of household air pollution on health, we develop and implement a Bayesian hierarchical model, based on Generalized Dirichlet Multinomial distributions, that jointly estimates non-linear trends in the use of eight key fuel types, overcoming several data-specific challenges including missing or combined fuel use values. We assess model fit using within-sample predictive analysis and an out-of-sample prediction experiment to evaluate the model's forecasting performance.

stat.AP

A general theory for preferential sampling in environmental networks

This paper presents a general model framework for detecting the preferential sampling of environmental monitors recording an environmental process across space and/or time. This is achieved by considering the joint distribution of an environmental process with a site--selection process that considers where and when sites are placed to measure the process. The environmental process may be spatial, temporal or spatio--temporal in nature. By sharing random effects between the two processes, the joint model is able to establish whether site placement was stochastically dependent of the environmental process under study. The embedding into a spatio--temporal framework also allows for the modelling of the dynamic site---selection process itself. Real--world factors affecting both the size and location of the network can be easily modelled and quantified. Depending upon the choice of population of locations to consider for selection across space and time under the site--selection process, different insights about the precise nature of preferential sampling can be obtained. The general framework developed in the paper is designed to be easily and quickly fit using the R-INLA package. We apply this framework to a case study involving particulate air pollution over the UK where a major reduction in the size of a monitoring network through time occurred. It is demonstrated that a significant response--biased reduction in the air quality monitoring network occurred. We also show that the network was consistently unrepresentative of the levels of particulate matter seen across much of GB throughout the operating life of the network. Finally we show that this may have led to a severe over-reporting of the population--average exposure levels experienced across GB. This could have great impacts on estimates of the health effects of black smoke levels.

stat.ME

Data Integration Model for Air Quality: A Hierarchical Approach to the Global Estimation of Exposures to Ambient Air Pollution

Air pollution is a major risk factor for global health, with both ambient and household air pollution contributing substantial components of the overall global disease burden. One of the key drivers of adverse health effects is fine particulate matter ambient pollution (PM$_{2.5}$) to which an estimated 3 million deaths can be attributed annually. The primary source of information for estimating exposures has been measurements from ground monitoring networks but, although coverage is increasing, there remain regions in which monitoring is limited. Ground monitoring data therefore needs to be supplemented with information from other sources, such as satellite retrievals of aerosol optical depth and chemical transport models. A hierarchical modelling approach for integrating data from multiple sources is proposed allowing spatially-varying relationships between ground measurements and other factors that estimate air quality. Set within a Bayesian framework, the resulting Data Integration Model for Air Quality (DIMAQ) is used to estimate exposures, together with associated measures of uncertainty, on a high resolution grid covering the entire world. Bayesian analysis on this scale can be computationally challenging and here approximate Bayesian inference is performed using Integrated Nested Laplace Approximations. Model selection and assessment is performed by cross-validation with the final model offering substantial increases in predictive accuracy, particularly in regions where there is sparse ground monitoring, when compared to current approaches: root mean square error (RMSE) reduced from 17.1 to 10.7, and population weighted RMSE from 23.1 to 12.1 $μ$gm$^{-3}$. Based on summaries of the posterior distributions for each grid cell, it is estimated that 92% of the world's population reside in areas exceeding the World Health Organization's Air Quality Guidelines.

stat.AP

Reducing estimation bias in adaptively changing monitoring networks with preferential site selection

This paper explores the topic of preferential sampling, specifically situations where monitoring sites in environmental networks are preferentially located by the designers. This means the data arising from such networks may not accurately characterize the spatio-temporal field they intend to monitor. Approaches that have been developed to mitigate the effects of preferential sampling in various contexts are reviewed and, building on these approaches, a general framework for dealing with the effects of preferential sampling in environmental monitoring is proposed. Strategies for implementation are proposed, leading to a method for improving the accuracy of official statistics used to report trends and inform regulatory policy. An essential feature of the method is its capacity to learn the preferential selection process over time and hence to reduce bias in these statistics. Simulation studies suggest dramatic reductions in bias are possible. A case study demonstrates use of the method in assessing the levels of air pollution due to black smoke in the UK over an extended period (1970-1996). In particular, dramatic reductions in the estimates of the number of sites out of compliance are observed.

stat.AP

Modelling the effects of air pollution on health using Bayesian Dynamic Generalised Linear Models

The relationship between short-term exposure to air pollution and mortality or morbidity has been the subject of much recent research, in which the standard method of analysis uses Poisson linear or additive models. In this paper we use a Bayesian dynamic generalised linear model (DGLM) to estimate this relationship, which allows the standard linear or additive model to be extended in two ways: (i) the long-term trend and temporal correlation present in the health data can be modelled by an autoregressive process rather than a smooth function of calendar time; (ii) the effects of air pollution are allowed to evolve over time. The efficacy of these two extensions are investigated by applying a series of dynamic and non-dynamic models to air pollution and mortality data from Greater London. A Bayesian approach is taken throughout, and a Markov chain monte carlo simulation algorithm is presented for inference. An alternative likelihood based analysis is also presented, in order to allow a direct comparison with the only previous analysis of air pollution and health data using a DGLM.

stat.AP

Modelling the impact of human activity on nitrogen dioxide concentrations in Europe

Ambient concentrations of many pollutants are associated with emissions due to human activity, such as road transport and other combustion sources. In this paper we consider air pollution as a multi--level phenomenon within a Bayesian hierarchical model. We examine different scales of variation in pollution concentrations ranging from large scale transboundary effects to more localised effects which are directly related to human activity. Specifically, in the first stage of the model, we isolate underlying patterns in pollution concentrations due to global factors such as underlying climate and topography, which are modelled together with spatial structure. At this stage measurements from monitoring sites located within rural areas are used which, as far as possible, are chosen to reflect background concentrations. Having isolated these global effects, in the second stage we assess the effects of human activity on pollution in urban areas. The proposed model was applied to concentrations of nitrogen dioxide measured throughout the EU for which significant increases are found to be associated with human activity in urban areas. The approach proposed here provides valuable information that could be used in performing health impact assessments and to inform policy.

stat.AP

Modeling Non-Stationary Processes Through Dimension Expansion

In this paper, we propose a novel approach to modeling nonstationary spatial fields. The proposed method works by expanding the geographic plane over which these processes evolve into higher dimensional spaces, transforming and clarifying complex patterns in the physical plane. By combining aspects of multi-dimensional scaling, group lasso, and latent variables models, a dimensionally sparse projection is found in which the originally nonstationary field exhibits stationarity. Following a comparison with existing methods in a simulated environment, dimension expansion is studied on a classic test-bed data set historically used to study nonstationary models. Following this, we explore the use of dimension expansion in modeling air pollution in the United Kingdom, a process known to be strongly influenced by rural/urban effects, amongst others, which gives rise to a nonstationary field.

stat.ME

Estimating exposure response functions using ambient pollution concentrations

This paper presents an approach to estimating the health effects of an environmental hazard. The approach is general in nature, but is applied here to the case of air pollution. It uses a computer model involving ambient pollution and temperature inputs, to simulate the exposures experienced by individuals in an urban area, whilst incorporating the mechanisms that determine exposures. The output from the model comprises a set of daily exposures for a sample of individuals from the population of interest. These daily exposures are approximated by parametric distributions, so that the predictive exposure distribution of a randomly selected individual can be generated. These distributions are then incorporated into a hierarchical Bayesian framework (with inference using Markov Chain Monte Carlo simulation) in order to examine the relationship between short-term changes in exposures and health outcomes, whilst making allowance for long-term trends, seasonality, the effect of potential confounders and the possibility of ecological bias. The paper applies this approach to particulate pollution (PM$_{10}$) and respiratory mortality counts for seniors in greater London ($\geq$65 years) during 1997. Within this substantive epidemiological study, the effects on health of ambient concentrations and (estimated) personal exposures are compared.

stat.AP