arXiv subjects

Geoffrey Fox

Publications and source records attributed to Geoffrey Fox.

At least 37 records · Page 2Linked to original sources

arXiv2025

IrrMap: A Large-Scale Comprehensive Dataset for Irrigation Method Mapping

We introduce IrrMap, the first large-scale dataset (1.1 million patches) for irrigation method mapping across regions. IrrMap consists of multi-resolution satellite imagery from LandSat and Sentinel, along with key auxiliary data such as crop type, land use, and vegetation indices. The dataset spans 1,687,899 farms and 14,117,330 acres across multiple western U.S. states from 2013 to 2023, providing a rich and diverse foundation for irrigation analysis and ensuring geospatial alignment and quality control. The dataset is ML-ready, with standardized 224x224 GeoTIFF patches, the multiple input modalities, carefully chosen train-test-split data, and accompanying dataloaders for seamless deep learning model training andbenchmarking in irrigation mapping. The dataset is also accompanied by a complete pipeline for dataset generation, enabling researchers to extend IrrMap to new regions for irrigation data collection or adapt it with minimal effort for other similar applications in agricultural and geospatial analysis. We also analyze the irrigation method distribution across crop groups, spatial irrigation patterns (using Shannon diversity indices), and irrigated area variations for both LandSat and Sentinel, providing insights into regional and resolution-based differences. To promote further exploration, we openly release IrrMap, along with the derived datasets, benchmark models, and pipeline code, through a GitHub repository: https://github.com/Nibir088/IrrMap and Data repository: https://huggingface.co/Nibir/IrrMap, providing comprehensive documentation and implementation details.

cs.CV↗

arXiv2025

Deep RC: A Scalable Data Engineering and Deep Learning Pipeline

Significant obstacles exist in scientific domains including genetics, climate modeling, and astronomy due to the management, preprocess, and training on complicated data for deep learning. Even while several large-scale solutions offer distributed execution environments, open-source alternatives that integrate scalable runtime tools, deep learning and data frameworks on high-performance computing platforms remain crucial for accessibility and flexibility. In this paper, we introduce Deep Radical-Cylon(RC), a heterogeneous runtime system that combines data engineering, deep learning frameworks, and workflow engines across several HPC environments, including cloud and supercomputing infrastructures. Deep RC supports heterogeneous systems with accelerators, allows the usage of communication libraries like MPI, GLOO and NCCL across multi-node setups, and facilitates parallel and distributed deep learning pipelines by utilizing Radical Pilot as a task execution framework. By attaining an end-to-end pipeline including preprocessing, model training, and postprocessing with 11 neural forecasting models (PyTorch) and hydrology models (TensorFlow) under identical resource conditions, the system reduces 3.28 and 75.9 seconds, respectively. The design of Deep RC guarantees the smooth integration of scalable data frameworks, such as Cylon, with deep learning processes, exhibiting strong performance on cloud platforms and scientific HPC systems. By offering a flexible, high-performance solution for resource-intensive applications, this method closes the gap between data preprocessing, model training, and postprocessing.

cs.DC↗

arXiv2025

Building Machine Learning Challenges for Anomaly Detection in Science

Scientific discoveries are often made by finding a pattern or object that was not predicted by the known rules of science. Oftentimes, these anomalous events or objects that do not conform to the norms are an indication that the rules of science governing the data are incomplete, and something new needs to be present to explain these unexpected outliers. The challenge of finding anomalies can be confounding since it requires codifying a complete knowledge of the known scientific behaviors and then projecting these known behaviors on the data to look for deviations. When utilizing machine learning, this presents a particular challenge since we require that the model not only understands scientific data perfectly but also recognizes when the data is inconsistent and out of the scope of its trained behavior. In this paper, we present three datasets aimed at developing machine learning-based anomaly detection for disparate scientific domains covering astrophysics, genomics, and polar science. We present the different datasets along with a scheme to make machine learning challenges around the three datasets findable, accessible, interoperable, and reusable (FAIR). Furthermore, we present an approach that generalizes to future machine learning challenges, enabling the possibility of large, more compute-intensive challenges that can ultimately lead to scientific discovery.

cs.LG↗

arXiv2024

Zephyr quantum-assisted hierarchical Calo4pQVAE for particle-calorimeter interactions

With the approach of the High Luminosity Large Hadron Collider (HL-LHC) era set to begin particle collisions by the end of this decade, it is evident that the computational demands of traditional collision simulation methods are becoming increasingly unsustainable. Existing approaches, which rely heavily on first-principles Monte Carlo simulations for modeling event showers in calorimeters, are projected to require millions of CPU-years annually -- far exceeding current computational capacities. This bottleneck presents an exciting opportunity for advancements in computational physics by integrating deep generative models with quantum simulations. We propose a quantum-assisted hierarchical deep generative surrogate founded on a variational autoencoder (VAE) in combination with an energy conditioned restricted Boltzmann machine (RBM) embedded in the model's latent space as a prior. By mapping the topology of D-Wave's Zephyr quantum annealer (QA) into the nodes and couplings of a 4-partite RBM, we leverage quantum simulation to accelerate our shower generation times significantly. To evaluate our framework, we use Dataset 2 of the CaloChallenge 2022. Through the integration of classical computation and quantum simulation, this hybrid framework paves way for utilizing large-scale quantum simulations as priors in deep generative models.

cs.LG↗

arXiv2024

Study of Dropout in PointPillars with 3D Object Detection

3D object detection is critical for autonomous driving, leveraging deep learning techniques to interpret LiDAR data. The PointPillars architecture is a prominent model in this field, distinguished by its efficient use of LiDAR data. This study provides an analysis of enhancing the performance of PointPillars model under various dropout rates to address overfitting and improve model generalization. Dropout, a regularization technique, involves randomly omitting neurons during training, compelling the network to learn robust and diverse features. We systematically compare the effects of different enhancement techniques on the model's regression performance during training and its accuracy, measured by Average Precision (AP) and Average Orientation Similarity (AOS). Our findings offer insights into the optimal enhancements, contributing to improved 3D object detection in autonomous driving applications.

cs.CV↗

arXiv2024

Time Series Foundation Models and Deep Learning Architectures for Earthquake Temporal and Spatial Nowcasting

Advancing the capabilities of earthquake nowcasting, the real-time forecasting of seismic activities remains a crucial and enduring objective aimed at reducing casualties. This multifaceted challenge has recently gained attention within the deep learning domain, facilitated by the availability of extensive, long-term earthquake datasets. Despite significant advancements, existing literature on earthquake nowcasting lacks comprehensive evaluations of pre-trained foundation models and modern deep learning architectures. These architectures, such as transformers or graph neural networks, uniquely focus on different aspects of data, including spatial relationships, temporal patterns, and multi-scale dependencies. This paper addresses the mentioned gap by analyzing different architectures and introducing two innovation approaches called MultiFoundationQuake and GNNCoder. We formulate earthquake nowcasting as a time series forecasting problem for the next 14 days within 0.1-degree spatial bins in Southern California, spanning from 1986 to 2024. Earthquake time series is forecasted as a function of logarithm energy released by quakes. Our comprehensive evaluation employs several key performance metrics, notably Nash-Sutcliffe Efficiency and Mean Squared Error, over time in each spatial region. The results demonstrate that our introduced models outperform other custom architectures by effectively capturing temporal-spatial relationships inherent in seismic data. The performance of existing foundation models varies significantly based on the pre-training datasets, emphasizing the need for careful dataset selection. However, we introduce a new general approach termed MultiFoundationPattern that combines a bespoke pattern with foundation model results handled as auxiliary streams. In the earthquake case, the resultant MultiFoundationQuake model achieves the best overall performance.

cs.LG↗

arXiv2024

Feasibility Study on Active Learning of Smart Surrogates for Scientific Simulations

High-performance scientific simulations, important for comprehension of complex systems, encounter computational challenges especially when exploring extensive parameter spaces. There has been an increasing interest in developing deep neural networks (DNNs) as surrogate models capable of accelerating the simulations. However, existing approaches for training these DNN surrogates rely on extensive simulation data which are heuristically selected and generated with expensive computation -- a challenge under-explored in the literature. In this paper, we investigate the potential of incorporating active learning into DNN surrogate training. This allows intelligent and objective selection of training simulations, reducing the need to generate extensive simulation data as well as the dependency of the performance of DNN surrogates on pre-defined training simulations. In the problem context of constructing DNN surrogates for diffusion equations with sources, we examine the efficacy of diversity- and uncertainty-based strategies for selecting training simulations, considering two different DNN architecture. The results set the groundwork for developing the high-performance computing infrastructure for Smart Surrogates that supports on-the-fly generation of simulation data steered by active learning strategies to potentially improve the efficiency of scientific simulations.

cs.LG↗

arXiv2024

Nowcasting Earthquakes with QuakeGPT: Methods and First Results

Earthquake nowcasting has been proposed as a means of tracking the change in large earthquake potential in a seismically active area. The method was developed using observable seismic data, in which probabilities of future large earthquakes can be computed using Receiver Operating Characteristic (ROC) methods. Furthermore, analysis of the Shannon information content of the earthquake catalogs has been used to show that there is information contained in the catalogs, and that it can vary in time. Here we discuss a new method for earthquake nowcasting that uses an AI-enhanced deep learning model "QuakeGPT" that is based on an attention-based science transformer adapted for time series forecasting. Such dot product attention-based transformers were introduced by Vaswani et al. (2017), and are the basis for the new large language models such as ChatGPT. To use these science transformers, they must first be trained on a large corpus of data. A problem is that the existing history of reliable earthquake catalog data extends back in time only a few decades, which is almost certainly too short to train a model for reliable nowcasting/forecasting. As a result, we turn to earthquake simulations to train the transformer model. Specifically we discuss a simple stochastic earthquake simulation model "ERAS" that has recently been introduced. The ERAS model is similar to the more common "ETAS" models, the difference being that the ERAS model has only 2 novel, adjustable parameters, rather than the 6-8 adjustable parameters that characterize most ETAS models. Using this ERAS model, we then define a transformer model and train it using a long catalog of ERAS simulations, then apply it to an ERAS validation dataset with the transformer model. In this paper, we describe this new method and assess the applicability to observed earthquake catalogs for use in nowcasting/forecasting.

physics.geo-ph↗

arXiv2024

A Comprehensive Evaluation of Generative Models in Calorimeter Shower Simulation

The pursuit of understanding fundamental particle interactions has reached unparalleled precision levels. Particle physics detectors play a crucial role in generating low-level object signatures that encode collision physics. However, simulating these particle collisions is a demanding task in terms of memory and computation which will be exasperated with larger data volumes, more complex detectors, and a higher pileup environment in the High-Luminosity LHC. The introduction of "Fast Simulation" has been pivotal in overcoming computational bottlenecks. The use of deep-generative models has sparked a surge of interest in surrogate modeling for detector simulations, generating particle showers that closely resemble the observed data. Nonetheless, there is a pressing need for a comprehensive evaluation of their performance using a standardized set of metrics. In this study, we conducted a rigorous evaluation of three generative models using standard datasets and a diverse set of metrics derived from physics, computer vision, and statistics. Furthermore, we explored the impact of using full versus mixed precision modes during inference. Our evaluation revealed that the CaloDiffusion and CaloScore generative models demonstrate the most accurate simulation of particle showers, yet there remains substantial room for improvement. Our findings identified areas where the evaluated models fell short in accurately replicating Geant4 data.

physics.ins-det↗

arXiv2024

Design and Implementation of an Analysis Pipeline for Heterogeneous Data

Managing and preparing complex data for deep learning, a prevalent approach in large-scale data science can be challenging. Data transfer for model training also presents difficulties, impacting scientific fields like genomics, climate modeling, and astronomy. A large-scale solution like Google Pathways with a distributed execution environment for deep learning models exists but is proprietary. Integrating existing open-source, scalable runtime tools and data frameworks on high-performance computing (HPC) platforms is crucial to address these challenges. Our objective is to establish a smooth and unified method of combining data engineering and deep learning frameworks with diverse execution capabilities that can be deployed on various high-performance computing platforms, including cloud and supercomputers. We aim to support heterogeneous systems with accelerators, where Cylon and other data engineering and deep learning frameworks can utilize heterogeneous execution. To achieve this, we propose Radical-Cylon, a heterogeneous runtime system with a parallel and distributed data framework to execute Cylon as a task of Radical Pilot. We thoroughly explain Radical-Cylon's design and development and the execution process of Cylon tasks using Radical Pilot. This approach enables the use of heterogeneous MPI-communicators across multiple nodes. Radical-Cylon achieves better performance than Bare-Metal Cylon with minimal and constant overhead. Radical-Cylon achieves (4~15)% faster execution time than batch execution while performing similar join and sort operations with 35 million and 3.5 billion rows with the same resources. The approach aims to excel in both scientific and engineering research HPC systems while demonstrating robust performance on cloud infrastructures. This dual capability fosters collaboration and innovation within the open-source scientific research community.

cs.DC↗

arXiv2023

Report on 2023 CyberTraining PI Meeting, 26-27 September 2023

This document describes a two-day meeting held for the Principal Investigators (PIs) of NSF CyberTraining grants. The report covers invited talks, panels, and six breakout sessions. The meeting involved over 80 PIs and NSF program managers (PMs). The lessons recorded in detail in the report are a wealth of information that could help current and future PIs, as well as NSF PMs, understand the future directions suggested by the PI community. The meeting was held simultaneously with that of the PIs of the NSF Cyberinfrastructure for Sustained Scientific Innovation (CSSI) program. This co-location led to two joint sessions: one with NSF speakers and the other on broader impact. Further, the joint poster and refreshment sessions benefited from the interactions between CSSI and CyberTraining PIs.

cs.CR↗

arXiv2023

RINAS: Training with Dataset Shuffling Can Be General and Fast

Deep learning datasets are expanding at an unprecedented pace, creating new challenges for data processing in model training pipelines. A crucial aspect of these pipelines is dataset shuffling, which significantly improves unbiased learning and convergence accuracy by adhering to the principles of random sampling. However, loading shuffled data for large datasets incurs significant overhead in the deep learning pipeline and severely impacts the end-to-end training throughput. To mitigate this, current deep learning systems often resort to partial dataset shuffling, sacrificing global randomness to maintain acceptable training throughput on large datasets, still leaving global shuffling efficiency issues not fully explored. In this work, we present RINAS, a data loading framework that systematically addresses the performance bottleneck of loading global shuffled datasets. Our key contribution is to offer an intra-batch unordered data fetching approach, which unleashes unexplored parallelism of data loading. We implement RINAS under the PyTorch framework for common dataset libraries HuggingFace and TorchVision. Our experimental results show that RINAS improves the throughput of general language model training and vision model training by up to 59% and 89%, respectively.

cs.DB↗

arXiv2023

RTP: Rethinking Tensor Parallelism with Memory Deduplication

In the evolving landscape of neural network models, one prominent challenge stand out: the significant memory overheads associated with training expansive models. Addressing this challenge, this study delves deep into the Rotated Tensor Parallelism (RTP). RTP is an innovative approach that strategically focuses on memory deduplication in distributed training environments. It boasts of unique features like a customized communication primitive and the Flyweight Pattern initialization. Furthermore, RTP ensures a seamless overlap between partition computation and partition weight communication, optimizing the training process. Our empirical evaluations underscore RTP's efficiency, revealing that its memory consumption during distributed system training is remarkably close to the optimal - distributing the memory overhead of a single machine equitably among multiple machines. The experimental results demonstrate that RTP is capable of achieving comparable performance to Distributed Data Parallel while providing support for significantly larger models with near-linear scalability in terms of memory. Code of RTP is available at https://github.com/wdlctc/rtp.

cs.DC↗

arXiv2023

FAIR for AI: An interdisciplinary and international community building perspective

A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were proposed in 2016 as prerequisites for proper data management and stewardship, with the goal of enabling the reusability of scholarly data. The principles were also meant to apply to other digital assets, at a high level, and over time, the FAIR guiding principles have been re-interpreted or extended to include the software, tools, algorithms, and workflows that produce data. FAIR principles are now being adapted in the context of AI models and datasets. Here, we present the perspectives, vision, and experiences of researchers from different countries, disciplines, and backgrounds who are leading the definition and adoption of FAIR principles in their communities of practice, and discuss outcomes that may result from pursuing and incentivizing FAIR AI research. The material for this report builds on the FAIR for AI Workshop held at Argonne National Laboratory on June 7, 2022.

cs.CY↗

arXiv2023

In-depth Analysis On Parallel Processing Patterns for High-Performance Dataframes

The Data Science domain has expanded monumentally in both research and industry communities during the past decade, predominantly owing to the Big Data revolution. Artificial Intelligence (AI) and Machine Learning (ML) are bringing more complexities to data engineering applications, which are now integrated into data processing pipelines to process terabytes of data. Typically, a significant amount of time is spent on data preprocessing in these pipelines, and hence improving its e fficiency directly impacts the overall pipeline performance. The community has recently embraced the concept of Dataframes as the de-facto data structure for data representation and manipulation. However, the most widely used serial Dataframes today (R, pandas) experience performance limitations while working on even moderately large data sets. We believe that there is plenty of room for improvement by taking a look at this problem from a high-performance computing point of view. In a prior publication, we presented a set of parallel processing patterns for distributed dataframe operators and the reference runtime implementation, Cylon [1]. In this paper, we are expanding on the initial concept by introducing a cost model for evaluating the said patterns. Furthermore, we evaluate the performance of Cylon on the ORNL Summit supercomputer.

cs.DC↗

arXiv2023

Analyzing the Performance of Deep Encoder-Decoder Networks as Surrogates for a Diffusion Equation

Neural networks (NNs) have proven to be a viable alternative to traditional direct numerical algorithms, with the potential to accelerate computational time by several orders of magnitude. In the present paper we study the use of encoder-decoder convolutional neural network (CNN) as surrogates for steady-state diffusion solvers. The construction of such surrogates requires the selection of an appropriate task, network architecture, training set structure and size, loss function, and training algorithm hyperparameters. It is well known that each of these factors can have a significant impact on the performance of the resultant model. Our approach employs an encoder-decoder CNN architecture, which we posit is particularly well-suited for this task due to its ability to effectively transform data, as opposed to merely compressing it. We systematically evaluate a range of loss functions, hyperparameters, and training set sizes. Our results indicate that increasing the size of the training set has a substantial effect on reducing performance fluctuations and overall error. Additionally, we observe that the performance of the model exhibits a logarithmic dependence on the training set size. Furthermore, we investigate the effect on model performance by using different subsets of data with varying features. Our results highlight the importance of sampling the configurational space in an optimal manner, as this can have a significant impact on the performance of the model and the required training time. In conclusion, our results suggest that training a model with a pre-determined error performance bound is not a viable approach, as it does not guarantee that edge cases with errors larger than the bound do not exist. Furthermore, as most surrogate tasks involve a high dimensional landscape, an ever increasing training set size is, in principle, needed, however it is not a practical solution.

cs.LG↗

arXiv2023

Supercharging Distributed Computing Environments For High Performance Data Engineering

The data engineering and data science community has embraced the idea of using Python & R dataframes for regular applications. Driven by the big data revolution and artificial intelligence, these applications are now essential in order to process terabytes of data. They can easily exceed the capabilities of a single machine, but also demand significant developer time & effort. Therefore it is essential to design scalable dataframe solutions. There have been multiple attempts to tackle this problem, the most notable being the dataframe systems developed using distributed computing environments such as Dask and Ray. Even though Dask/Ray distributed computing features look very promising, we perceive that the Dask Dataframes/Ray Datasets still have room for optimization. In this paper, we present CylonFlow, an alternative distributed dataframe execution methodology that enables state-of-the-art performance and scalability on the same Dask/Ray infrastructure (thereby supercharging them!). To achieve this, we integrate a high performance dataframe system Cylon, which was originally based on an entirely different execution paradigm, into Dask and Ray. Our experiments show that on a pipeline of dataframe operators, CylonFlow achieves 30x more distributed performance than Dask Dataframes. Interestingly, it also enables superior sequential performance due to the native C++ execution of Cylon. We believe the success of Cylon & CylonFlow extends beyond the data engineering domain, and can be used to consolidate high performance computing and distributed computing ecosystems.

cs.DC↗

arXiv2022

Hybrid Cloud and HPC Approach to High-Performance Dataframes

Data pre-processing is a fundamental component in any data-driven application. With the increasing complexity of data processing operations and volume of data, Cylon, a distributed dataframe system, is developed to facilitate data processing both as a standalone application and as a library, especially for Python applications. While Cylon shows promising performance results, we experienced difficulties trying to integrate with frameworks incompatible with the traditional Message Passing Interface (MPI). While MPI implementations encompass scalable and efficient communication routines, their process launching mechanisms work well with mainstream HPC systems but are incompatible with some environments that adopt their own resource management systems. In this work, we alleviated this issue by directly integrating the Unified Communication X (UCX) framework, which supports a variety of classic HPC and non-HPC process-bootstrapping mechanisms as our communication framework. While we experimented with our methodology on Cylon, the same technique can be used to bring MPI communication to other applications that do not employ MPI's built-in process management approach.

cs.DC↗