arXiv subjects

Georgiana Ifrim

Publications and source records attributed to Georgiana Ifrim.

31 records · Page 2Linked to original sources

arXiv2022

MrSQM: Fast Time Series Classification with Symbolic Representations

Symbolic representations of time series have proven to be effective for time series classification, with many recent approaches including SAX-VSM, BOSS, WEASEL, and MrSEQL. The key idea is to transform numerical time series to symbolic representations in the time or frequency domain, i.e., sequences of symbols, and then extract features from these sequences. While achieving high accuracy, existing symbolic classifiers are computationally expensive. In this paper we present MrSQM, a new time series classifier which uses multiple symbolic representations and efficient sequence mining, to extract important time series features. We study four feature selection approaches on symbolic sequences, ranging from fully supervised, to unsupervised and hybrids. We propose a new approach for optimal supervised symbolic feature selection in all-subsequence space, by adapting a Chi-squared bound developed for discriminative pattern mining, to time series. Our extensive experiments on 112 datasets of the UEA/UCR benchmark demonstrate that MrSQM can quickly extract useful features and learn accurate classifiers with the classic logistic regression algorithm. Interestingly, we find that a very simple and fast feature selection strategy can be highly effective as compared with more sophisticated and expensive methods. MrSQM advances the state-of-the-art for symbolic time series classifiers and it is an effective method to achieve high accuracy, with fast runtime.

cs.LG↗

arXiv2021

Interpretability of a Deep Learning Model in the Application of Cardiac MRI Segmentation with an ACDC Challenge Dataset

Cardiac Magnetic Resonance (CMR) is the most effective tool for the assessment and diagnosis of a heart condition, which malfunction is the world's leading cause of death. Software tools leveraging Artificial Intelligence already enhance radiologists and cardiologists in heart condition assessment but their lack of transparency is a problem. This project investigates if it is possible to discover concepts representative for different cardiac conditions from the deep network trained to segment crdiac structures: Left Ventricle (LV), Right Ventricle (RV) and Myocardium (MYO), using explainability methods that enhances classification system by providing the score-based values of qualitative concepts, along with the key performance metrics. With introduction of a need of explanations in GDPR explainability of AI systems is necessary. This study applies Discovering and Testing with Concept Activation Vectors (D-TCAV), an interpretaibilty method to extract underlying features important for cardiac disease diagnosis from MRI data. The method provides a quantitative notion of concept importance for disease classified. In previous studies, the base method is applied to the classification of cardiac disease and provides clinically meaningful explanations for the predictions of a black-box deep learning classifier. This study applies a method extending TCAV with a Discovering phase (D-TCAV) to cardiac MRI analysis. The advantage of the D-TCAV method over the base method is that it is user-independent. The contribution of this study is a novel application of the explainability method D-TCAV for cardiac MRI anlysis. D-TCAV provides a shorter pre-processing time for clinicians than the base method.

cs.CV↗

arXiv2020

Background Knowledge Injection for Interpretable Sequence Classification

Sequence classification is the supervised learning task of building models that predict class labels of unseen sequences of symbols. Although accuracy is paramount, in certain scenarios interpretability is a must. Unfortunately, such trade-off is often hard to achieve since we lack human-independent interpretability metrics. We introduce a novel sequence learning algorithm, that combines (i) linear classifiers - which are known to strike a good balance between predictive power and interpretability, and (ii) background knowledge embeddings. We extend the classic subsequence feature space with groups of symbols which are generated by background knowledge injected via word or graph embeddings, and use this new feature space to learn a linear classifier. We also present a new measure to evaluate the interpretability of a set of symbolic features based on the symbol embeddings. Experiments on human activity recognition from wearables and amino acid sequence classification show that our classification approach preserves predictive power, while delivering more interpretable models.

cs.LG↗

arXiv2020

Interpretable Time Series Classification using Linear Models and Multi-resolution Multi-domain Symbolic Representations

The time series classification literature has expanded rapidly over the last decade, with many new classification approaches published each year. Prior research has mostly focused on improving the accuracy and efficiency of classifiers, with interpretability being somewhat neglected. This aspect of classifiers has become critical for many application domains and the introduction of the EU GDPR legislation in 2018 is likely to further emphasize the importance of interpretable learning algorithms. Currently, state-of-the-art classification accuracy is achieved with very complex models based on large ensembles (COTE) or deep neural networks (FCN). These approaches are not efficient with regard to either time or space, are difficult to interpret and cannot be applied to variable-length time series, requiring pre-processing of the original series to a set fixed-length. In this paper we propose new time series classification algorithms to address these gaps. Our approach is based on symbolic representations of time series, efficient sequence mining algorithms and linear classification models. Our linear models are as accurate as deep learning models but are more efficient regarding running time and memory, can work with variable-length time series and can be interpreted by highlighting the discriminative symbolic features on the original time series. We show that our multi-resolution multi-domain linear classifier (mtSS-SEQL+LR) achieves a similar accuracy to the state-of-the-art COTE ensemble, and to recent deep learning methods (FCN, ResNet), but uses a fraction of the time and memory required by either COTE or deep models. To further analyse the interpretability of our classifier, we present a case study on a human motion dataset collected by the authors. We release all the results, source code and data to encourage reproducibility.

cs.LG↗

arXiv2020

A Large-Scale Multi-Document Summarization Dataset from the Wikipedia Current Events Portal

Multi-document summarization (MDS) aims to compress the content in large document collections into short summaries and has important applications in story clustering for newsfeeds, presentation of search results, and timeline generation. However, there is a lack of datasets that realistically address such use cases at a scale large enough for training supervised models for this task. This work presents a new dataset for MDS that is large both in the total number of document clusters and in the size of individual clusters. We build this dataset by leveraging the Wikipedia Current Events Portal (WCEP), which provides concise and neutral human-written summaries of news events, with links to external source articles. We also automatically extend these source articles by looking for related articles in the Common Crawl archive. We provide a quantitative analysis of the dataset and empirical results for several state-of-the-art MDS techniques.

cs.CL↗

arXiv2020

Examining the State-of-the-Art in News Timeline Summarization

Previous work on automatic news timeline summarization (TLS) leaves an unclear picture about how this task can generally be approached and how well it is currently solved. This is mostly due to the focus on individual subtasks, such as date selection and date summarization, and to the previous lack of appropriate evaluation metrics for the full TLS task. In this paper, we compare different TLS strategies using appropriate evaluation frameworks, and propose a simple and effective combination of methods that improves over the state-of-the-art on all tested benchmarks. For a more robust evaluation, we also present a new TLS dataset, which is larger and spans longer time periods than previous datasets.

cs.CL↗

arXiv2018

Story Disambiguation: Tracking Evolving News Stories across News and Social Streams

Following a particular news story online is an important but difficult task, as the relevant information is often scattered across different domains/sources (e.g., news articles, blogs, comments, tweets), presented in various formats and language styles, and may overlap with thousands of other stories. In this work we join the areas of topic tracking and entity disambiguation, and propose a framework named Story Disambiguation - a cross-domain story tracking approach that builds on real-time entity disambiguation and a learning-to-rank framework to represent and update the rich semantic structure of news stories. Given a target news story, specified by a seed set of documents, the goal is to effectively select new story-relevant documents from an incoming document stream. We represent stories as entity graphs and we model the story tracking problem as a learning-to-rank task. This enables us to track content with high accuracy, from multiple domains, in real-time. We study a range of text, entity and graph based features to understand which type of features are most effective for representing stories. We further propose new semi-supervised learning techniques to automatically update the story representation over time. Our empirical study shows that we outperform the accuracy of state-of-the-art methods for tracking mixed-domain document streams, while requiring fewer labeled data to seed the tracked stories. This is particularly the case for local news stories that are easily over shadowed by other trending stories, and for complex news stories with ambiguous content in noisy stream environments.

cs.CL↗

arXiv2018

Interpretable Time Series Classification using All-Subsequence Learning and Symbolic Representations in Time and Frequency Domains

The time series classification literature has expanded rapidly over the last decade, with many new classification approaches published each year. The research focus has mostly been on improving the accuracy and efficiency of classifiers, while their interpretability has been somewhat neglected. Classifier interpretability has become a critical constraint for many application domains and the introduction of the 'right to explanation' GDPR EU legislation in May 2018 is likely to further emphasize the importance of explainable learning algorithms. In this work we analyse the state-of-the-art for time series classification, and propose new algorithms that aim to maintain the classifier accuracy and efficiency, but keep interpretability as a key design constraint. We present new time series classification algorithms that advance the state-of-the-art by implementing the following three key ideas: (1) Multiple resolutions of symbolic approximations: we combine symbolic representations obtained using different parameters; (2) Multiple domain representations: we combine symbolic approximations in time (e.g., SAX) and frequency (e.g., SFA) domains; (3) Efficient navigation of a huge symbolic-words space: we adapt a symbolic sequence classifier named SEQL, to make it work with multiple domain representations (e.g., SAX-SEQL, SFA-SEQL), and use its greedy feature selection strategy to effectively filter the best features for each representation. We show that a multi-resolution multi-domain linear classifier, SAX-SFA-SEQL, achieves a similar accuracy to the state-of-the-art COTE ensemble, and to a recent deep learning method (FCN), but uses a fraction of the time required by either COTE or FCN. We discuss the accuracy, efficiency and interpretability of our proposed algorithms. To further analyse the interpretability aspect of our classifiers, we present a case study on an ecology benchmark.

cs.LG↗

arXiv2017

On Supporting Digital Journalism: Case Studies in Co-Designing Journalistic Tools

Since 2013 researchers at University College Dublin in the Insight Centre for Data Analytics have been involved in a significant research programme in digital journalism, specifically targeting tools and social media guidelines to support the work of journalists. Most of this programme was undertaken in collaboration with The Irish Times. This collaboration involved identifying key problems currently faced by digital journalists, developing tools as solutions to these problems, and then iteratively co-designing these tools with feedback from journalists. This paper reports on our experiences and learnings from this research programme, with a view to informing similar efforts in the future.

cs.CY↗

arXiv2015

A Machine Learning Approach to Predicting the Smoothed Complexity of Sorting Algorithms

Smoothed analysis is a framework for analyzing the complexity of an algorithm, acting as a bridge between average and worst-case behaviour. For example, Quicksort and the Simplex algorithm are widely used in practical applications, despite their heavy worst-case complexity. Smoothed complexity aims to better characterize such algorithms. Existing theoretical bounds for the smoothed complexity of sorting algorithms are still quite weak. Furthermore, empirically computing the smoothed complexity via its original definition is computationally infeasible, even for modest input sizes. In this paper, we focus on accurately predicting the smoothed complexity of sorting algorithms, using machine learning techniques. We propose two regression models that take into account various properties of sorting algorithms and some of the known theoretical results in smoothed analysis to improve prediction quality. We show experimental results for predicting the smoothed complexity of Quicksort, Mergesort, and optimized Bubblesort for large input sizes, therefore filling the gap between known theoretical and empirical results.

cs.LG↗

arXiv2014

Be In The Know: Connecting News Articles to Relevant Twitter Conversations

In the era of data-driven journalism, data analytics can deliver tools to support journalists in connecting to new and developing news stories, e.g., as echoed in micro-blogs such as Twitter, the new citizen-driven media. In this paper, we propose a framework for tracking and automatically connecting news articles to Twitter conversations as captured by Twitter hashtags. For example, such a system could alert journalists about news that get a lot of Twitter reaction, so that they can investigate those conversations for new developments in the story, promote their article to a set of interested consumers, or discover general sentiment towards the story. Mapping articles to appropriate hashtags is nevertheless very challenging, due to different language styles used in articles versus tweets, the streaming aspect of news and tweets, as well as the user behavior when marking certain tweet-terms as hashtags. As a case-study, we continuously track the RSS feeds of Irish Times news articles and a focused Twitter stream over a two months period, and present a system that assigns hashtags to each article, based on its Twitter echo. We propose a machine learning approach for classifying and ranking article-hashtag pairs. Our empirical study shows that our system delivers high precision for this task.

cs.SI↗

arXiv2010

Bounded Coordinate-Descent for Biological Sequence Classification in High Dimensional Predictor Space

We present a framework for discriminative sequence classification where the learner works directly in the high dimensional predictor space of all subsequences in the training set. This is possible by employing a new coordinate-descent algorithm coupled with bounding the magnitude of the gradient for selecting discriminative subsequences fast. We characterize the loss functions for which our generic learning algorithm can be applied and present concrete implementations for logistic regression (binomial log-likelihood loss) and support vector machines (squared hinge loss). Application of our algorithm to protein remote homology detection and remote fold recognition results in performance comparable to that of state-of-the-art methods (e.g., kernel support vector machines). Unlike state-of-the-art classifiers, the resulting classification models are simply lists of weighted discriminative subsequences and can thus be interpreted and related to the biological problem.

cs.LG↗

arXiv2009

Generating Concise and Readable Summaries of XML Documents

XML has become the de-facto standard for data representation and exchange, resulting in large scale repositories and warehouses of XML data. In order for users to understand and explore these large collections, a summarized, bird's eye view of the available data is a necessity. In this paper, we are interested in semantic XML document summaries which present the "important" information available in an XML document to the user. In the best case, such a summary is a concise replacement for the original document itself. At the other extreme, it should at least help the user make an informed choice as to the relevance of the document to his needs. In this paper, we address the two main issues which arise in producing such meaningful and concise summaries: i) which tags or text units are important and should be included in the summary, ii) how to generate summaries of different sizes.%for different memory budgets. We conduct user studies with different real-life datasets and show that our methods are useful and effective in practice.

cs.IR↗