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Georgios Stamatakos

Publications and source records attributed to Georgios Stamatakos.

2 recordsLinked to original sources

A mathematical, in silico implemented, modular model for tumor growth in a spatially inhomogeneous, time-varying chemical environment (1st unrevised edition)

During the last decades, medical observations and multiscale data concerning tumor growth are mounting. At the same time, contemporary imaging techniques well established in clinical practice, provide a variety of information on real-time, in-vivo tumor growth. Mathematical and in-silico modeling has been widely recruited to provide means for further understanding of pertinent biological phenomena. However, despite the vast amounts of new evidence compiled by medical doctors, there are still many aspects of tumor growth that remain largely unknown. There is still a large variety of mechanisms to be better understood and therefore, many hypotheses to be tested. To approach this problem, starting from mathematical elaborations, we have developed a model of the early phases of tumor growth consisting of several algorithmic modules, each one corresponding to a particular biological mechanism. The modularity of the model allows keeping track of the assumptions made in each step and facilitates re-adjustment, in case new hypotheses need to be considered. Simulations showed good qualitative agreement with biological observations, and revealed a non-trivial interplay between between oxygen requirements of cancer cells and their maximum mitosis rates. The proposed model has, at least in principle, the potential to exploit data from contemporary imaging techniques and is eligible for utilizing multicore computation.

q-bio.TO

Top-Down Multilevel Simulation of Tumor Response to Treatment in the Context of In Silico Oncology

The aim of this chapter is to provide a brief introduction into the basics of a top-down multilevel tumor dynamics modeling method primarily based on discrete entity consideration and manipulation. The method is clinically oriented, one of its major goals being to support patient individualized treatment optimization through experimentation in silico (=on the computer). Therefore, modeling of the treatment response of clinical tumors lies at the epicenter of the approach. Macroscopic data, including i.a. anatomic and metabolic tomographic images of the tumor, provide the framework for the integration of data and mechanisms pertaining to lower and lower biocomplexity levels such as clinically approved cellular and molecular biomarkers. The method also provides a powerful framework for the investigation of multilevel (multiscale) tumor biology in the generic investigational context. The Oncosimulator, a multiscale physics and biomedical engineering concept and construct tightly associated with the method and currently undergoing clinical adaptation, optimization and validation, is also sketched. A brief outline of the approach is provided in natural language. Two specific models of tumor response to chemotherapeutic and radiotherapeutic schemes are briefly outlined and indicative results are presented in order to exemplify the application potential of the method. The chapter concludes with a discussion of several important aspects of the method including i.a. numerical analysis aspects, technological issues, model extensions and validation within the framework of actual running clinico-genomic trials. Future perspectives and challenges are also addressed.

physics.med-ph