arXiv subjects

Geran Zhao

Publications and source records attributed to Geran Zhao.

4 recordsLinked to original sources

arXiv2026

Toward High-Fidelity 3D Point-Cloud Learning for Brain Folding Morphology Prediction Using Trans-Unet

Learning high-fidelity point-cloud features in the 3D space poses significant challenges, including permutation invariance, lack of local context, difficulty in fine-grained surface reconstruction, and high computational cost. In this article, we propose Trans-Unet, a novel framework that addresses these issues by first tansforming 3D point-cloud data into a 2D grid domain and then employing a U-shaped hybrid model that integrates Convolutional Neural Networks, and self-attention mechanisms. The proposed Trans-Unet effectively learns and reconstructs precise features from high-resolution 3D point-cloud data (with 40,401 points in surface and 2,382 points in fiber) derived from a predefined finite element brain patch growth model, enabling accurate prediction of brain folding patterns. By combining multiple techniques, Trans-Unet leverages the complementary strengths: the 3D-to-2D transformation preserves fine-grained structural information while significantly reducing computational cost and the curse of dimensionality; convolutional blocks capture hierarchical, low-level local representations; and the self-attention mechanism models global, high-level semantics and long-range dependencies. The dataset consists of 3D point-clouds containing both brain surface patches and fiber information generated by a large-scale finite element model. Trans-Unet is applied to predict brain surface folding from the initial state (state 0 or states 0-2) to the final state (state 3). Experimental results demonstrate that Trans-Unet achieves high-resolution predictions of brain patch growth, surpassing existing methods in both fidelity and accuracy.

cs.CV↗

arXiv2026

An Integrated Deep Learning and Statistical Framework for Whole-Network Gene--Environment Association with Leaf Vascular Architecture

Leaf veins exhibit remarkable diversity in architecture and patterning, yet existing gene--environment association studies have primarily quantified leaf venation using a small collection of low-dimensional summary traits, thereby discarding most of the structural information contained in the original images. We propose an integrated deep learning and statistical framework. The proposed framework achieves four methodological advances. First, it represents the complete leaf vascular architecture as a whole-network image phenotype. Second, it fine-tunes the deep learning-based Edge Detection with Transformers (EDTER) model to accurately extract whole-network leaf vascular architecture from RGB images by jointly learning local and global contextual features. Third, it constructs a new annotated leaf image database by integrating edge maps generated by DiffusionEdge with the Berkeley Segmentation Database (BSDS500). Fourth, it applies Semiparametric Sparse Canonical Correlation Analysis (SSCCA) to perform variable selection and model associations between repeatedly measured high-dimensional Bivariate image responses and high-dimensional predictors while simultaneously accommodating sparse, zero-inflated data represented by edge maps through a truncated latent Gaussian copula model. Two simulation studies demonstrate the performance of the proposed framework under increasing levels of complexity. Application to a real \emph{Populus} dataset identifies three significant gene--geography interactions associated with leaf vascular architecture, providing new biological insights and establishing a broadly applicable methodological framework for high-dimensional complex image phenotypes.

cs.LG↗

arXiv2022

Your "Attention" Deserves Attention: A Self-Diversified Multi-Channel Attention for Facial Action Analysis

Visual attention has been extensively studied for learning fine-grained features in both facial expression recognition (FER) and Action Unit (AU) detection. A broad range of previous research has explored how to use attention modules to localize detailed facial parts (e,g. facial action units), learn discriminative features, and learn inter-class correlation. However, few related works pay attention to the robustness of the attention module itself. Through experiments, we found neural attention maps initialized with different feature maps yield diverse representations when learning to attend the identical Region of Interest (ROI). In other words, similar to general feature learning, the representational quality of attention maps also greatly affects the performance of a model, which means unconstrained attention learning has lots of randomnesses. This uncertainty lets conventional attention learning fall into sub-optimal. In this paper, we propose a compact model to enhance the representational and focusing power of neural attention maps and learn the "inter-attention" correlation for refined attention maps, which we term the "Self-Diversified Multi-Channel Attention Network (SMA-Net)". The proposed method is evaluated on two benchmark databases (BP4D and DISFA) for AU detection and four databases (CK+, MMI, BU-3DFE, and BP4D+) for facial expression recognition. It achieves superior performance compared to the state-of-the-art methods.

cs.CV↗

arXiv2021

Epistasis Detection Via the Joint Cumulant

Selecting influential nonlinear interactive features from ultrahigh dimensional data has been an important task in various fields. However, statistical accuracy and computational feasibility are the two biggest concerns when more than half a million features are collected in practice. Many extant feature screening approaches are either focused on only main effects or heavily rely on heredity structure, hence rendering them ineffective in a scenario presenting strong interactive but weak main effects. In this article, we propose a new interaction screening procedure based on joint cumulant (named JCI-SIS). We show that the proposed procedure has strong sure screening consistency and is theoretically sound to support its performance. Simulation studies designed for both continuous and categorical predictors are performed to demonstrate the versatility and practicability of our JCI-SIS method. We further illustrate the power of JCI-SIS by applying it to screen 27,554,602,881 interaction pairs involving 234,754 single nucleotide polymorphisms (SNPs) for each of the 4,000 subjects collected from polycystic ovary syndrome (PCOS) patients and healthy controls.

stat.ME↗