arXiv subjects

Gerhard Gompper

Publications and source records attributed to Gerhard Gompper.

At least 19 recordsLinked to original sources

arXiv2026

Trypanosome motility in blood and particle suspensions

Motile microorganisms often navigate crowded and structurally complex environments, where surrounding obstacles can strongly influence locomotion. The bloodstream form of the flagellate parasite Trypanosoma brucei circulates in blood, a dense suspension of red blood cells (RBCs), yet the physical mechanisms governing its locomotion under such conditions remain poorly understood because direct experimental observations are challenging. Here, we combine numerical simulations with in vitro experiments to investigate trypanosome motility in concentrated RBC suspensions and in suspensions of spherical colloidal particles. Simulations reveal that the parasite swimming speed increases by up to $50\%$ at RBC volume fractions comparable to those in blood. To identify the origin of this enhancement, we perform controlled studies in colloidal suspensions with particles of different sizes. We find that suspended particles substantially increase the anisotropy between the perpendicular and parallel friction coefficients acting on the beating flagellum, thereby enhancing propulsion. This effect is most pronounced when the suspended particles are comparable to or smaller than the characteristic wavelength of the flagellar beat. Experiments with microparticle suspensions confirm an increase in trypanosome propulsion with increasing particle concentration, in qualitative agreement with the simulations. Our results uncover a general physical mechanism by which concentrated particle suspensions can enhance flagellar-beat-driven locomotion and suggest that the densely crowded, particulate environment of blood may facilitate trypanosome propulsion. These findings provide new insight into trypanosome motility in the bloodstream and may apply broadly to other flagellated microswimmers in complex suspensions.

physics.bio-ph↗

arXiv2026

Emergent Self-Organisation of Intelligent Active Particles

Intelligent active particles are characterized by self-propulsion, directional sensing of their environment, information processing, decision making and goal-oriented self-steering. This implies, in particular, the prevalence of non-reciprocal interactions, and the importance of information propagation through agent groups. Examples include biological systems (cells, insects, birds, fish, pedestrians) as well as engineered systems (nano- and microbots). As many agents move in an aqueous medium, hydrodynamic interactions strongly affect the dynamics. The emergent dynamics includes the formation of swarms and flocks, predator-prey behavior, and the navigation in complex environments.

physics.bio-ph↗

arXiv2026

Primary hemostasis and dynamics of clot formation after microvascular injury

Primary hemostasis is initiated by platelet adhesion and aggregation at a site of vascular injury and is strongly regulated by local hydrodynamic conditions. At elevated shear rates, platelet capture is mediated by von Willebrand factor (vWF), a multimeric protein that undergoes shear-induced unfolding and becomes adhesive. We investigate early-stage clot formation under physiological high-shear-flow conditions by employing particle-based mesoscale hydrodynamics simulations with explicitly resolved red blood cells, platelets, and mechano-sensitive vWF in a microchannel geometry. The model incorporates vWF-mediated adhesion of platelets to a hemostatic surface, together with non-periodic inflow-outflow boundary conditions that allow continuous material supply and transport. We analyze the dynamics of platelet-vWF aggregation, clot growth dynamics, clot geometry and internal stresses, and thrombo-embolization across a range of elevated flow rates. Our results demonstrate that clot formation proceeds through the establishment of platelet-vWF aggregates at the hemostatic site, and that the clot reaches a finite size determined solely by hydrodynamic forces, without invoking biochemical stabilization mechanisms. Beyond a critical size, increased drag from fluid flow leads to recurrent embolization events that limit further growth. These findings highlight the central role of hydrodynamic stresses in regulating primary hemostasis and provide a mechanistic framework for understanding clot stability under physiological flow conditions.

physics.bio-ph↗

arXiv2025

Run-and-Tumble Escape in Pursuit-Evasion Dynamics of Intelligent Active Particles

The pursuit-evasion game is studied for two adversarial active agents, modelled as a deterministic self-steering pursuer and a stochastic, cognitive evader. The pursuer chases the evader by reorienting its propulsion direction with limited maneuverability, while the evader escapes by executing sharp, unpredictable turns, whose timing and direction the pursuer cannot anticipate. To make the target responsive and agile when the threat level is high, the tumbling frequency is set to increase with decreasing distance from the pursuer; furthermore, the range of preferred tumbling directions is varied. Numerical simulations of such a pursuit-target pair in two spatial dimensions reveal two important scenarios. For dominant pursuers, the evader is compelled to adopt a high-risk strategy that allows the pursuer to approach closely before the evader executes a potentially game-changing backward maneuver to pull away from the pursuer. Otherwise, a strategy where the evader tumbles forward with continuous slight adjustments of the propulsion direction can significantly increase the capture time by preventing the pursuer from aligning with the target propulsion direction, while maintaining the persistence of the target motion. Our results can guide the design of bioinspired robotic systems with efficient evasion capabilities.

physics.bio-ph↗

arXiv2025

Binary Mixtures of Intelligent Active Brownian Particles with Visual Perception

The collective properties of a binary mixture of A- and B-type self-steering particles endowed with visual perception are studied by computer simulations. Active Brownian particles are employed with an additional steering mechanism, which enables them to adjust their propulsion direction relative to the instantaneous positions of neighboring particles, depending on the species, either steering toward or away from them. Steering can be nonreciprocal between the A- and B-type particles. The underlying dynamical and structural properties of the system are governed by the strength and polarity of the maneuverabilities associated with the vision-induced steering. The model predicts the emergence of a large variety of nonequilibrium behaviors, which we systematically characterize for all nine principal sign combinations of AA, BB, AB and BA maneuverabilites. In particular, we observe the formation of multimers, encapsulated aggregates, honeycomb lattices, and predator-prey pursuit. Notably, for a predator-prey system, the maneuverability and vision angle employed by a predator significantly impacts the spatial distribution of the surrounding prey particles. For systems with electric-charge-like interactions and non-stochiometric composition, we obtain at intermediate activity levels an enhanced diffusion compared to non-steering active Brownian particles.

cond-mat.soft↗

arXiv2025

Intelligent Soft Matter: Towards Embodied Intelligence

Intelligent soft matter stands at the intersection of materials science, physics, and cognitive science, promising to change how we design and interact with materials. This transformative field seeks to create materials that possess life-like capabilities, such as perception, learning, memory, and adaptive behavior. Unlike traditional materials, which typically perform static or predefined functions, intelligent soft matter dynamically interacts with its environment. It integrates multiple sensory inputs, retains experiences, and makes decisions to optimize its responses. Inspired by biological systems, these materials intend to leverage the inherent properties of soft matter: flexibility, self-evolving, and responsiveness to perform functions that mimic cognitive processes. By synthesizing current research trends and projecting their evolution, we present a forward-looking perspective on how intelligent soft matter could be constructed, with the aim of inspiring innovations in fields such as biomedical devices, adaptive robotics, and beyond. We highlight new pathways for integrating design of sensing, memory and action with internal low-power operations and discuss challenges for practical implementation of materials with "intelligent behavior". These approaches outline a path towards to more robust, versatile and scalable materials that can potentially act, compute, and "think" by their inherent intrinsic material behaviour beyond traditional smart technologies relying on external control.

cond-mat.soft↗

arXiv2024

The 2024 Motile Active Matter Roadmap

Activity and autonomous motion are fundamental aspects of many living and engineering systems. Here, the scale of biological agents covers a wide range, from nanomotors, cytoskeleton, and cells, to insects, fish, birds, and people. Inspired by biological active systems, various types of autonomous synthetic nano- and micromachines have been designed, which provide the basis for multifunctional, highly responsive, intelligent active materials. A major challenge for understanding and designing active matter is their inherent non-equilibrium nature due to persistent energy consumption, which invalidates equilibrium concepts such as free energy, detailed balance, and time-reversal symmetry. Furthermore, interactions in ensembles of active agents are often non-additive and non-reciprocal. An important aspect of biological agents is their ability to sense the environment, process this information, and adjust their motion accordingly. It is an important goal for the engineering of micro-robotic systems to achieve similar functionality. With many fundamental properties of motile active matter now reasonably well understood and under control, the ground is prepared for the study of physical aspects and mechanisms of motion in complex environments, of the behavior of systems with new physical features like chirality, of the development of novel micromachines and microbots, of the emergent collective behavior and swarming of intelligent self-propelled particles, and of particular features of microbial systems. The vast complexity of phenomena and mechanisms involved in the self-organization and dynamics of motile active matter poses major challenges, which can only be addressed by a truly interdisciplinary effort involving scientists from biology, chemistry, ecology, engineering, mathematics, and physics.

cond-mat.soft↗

arXiv2024

Viscotaxis of Beating Flagella at Surfaces

Many biological microorganisms and artificial microswimmers react to external cues of environmental gradients by changing their swimming directions. We study here the behavior of eukarytic flagellated microswimmers in linear viscosity gradients. We employ a model of flagellum consisting of a semi-flexible filament with a travelling wave of spontaneous curvature to study viscotaxis of actively beating flagella in two spatial dimensions. The propulsion of the flagellum in a fluid due to a hydrodynamic friction anisotropy is described by resistive-force theory. Using numerical simulations and analytical theory, we show that beating flagella exhibit positive viscotaxis, reorienting themselves toward higher viscosity areas. We quantify this behavior by characterization of the dependence of the rotational velocity on beat amplitude, swimming speed, and wave length. We also examining the effects of asymmetric flagellar wave forms, which imply circular trajectories in the absence of viscosity gradients; here, large asymmetry leads to trochoid-like trajectories perpendicular to the gradient in the form drifting circles. The flagellar deformability strongly reduce the beat amplitude and the viscotatic response. The viscotatic response is shown to be captured by a universal function of the sperm number.

cond-mat.soft↗

arXiv2024

How flagellated bacteria wobble

A flagellated bacterium navigates fluid environments by rotating its helical flagellar bundle. The wobbling of the bacterial body significantly influences its swimming behavior. To quantify the three underlying motions--precession, nutation, and spin, we extract the Euler angles from trajectories generated by mesoscale hydrodynamics simulations, which is experimentally unattainable. In contrast to the common assumption, the cell body does not undergo complete cycles of spin, a general result for multiflagellated bacteria. Our simulations produce apparent wobbling periods that closely match the results of {\it E. coli} obtained from experiments and reveal the presence of two kinds of precession modes, consistent with theoretical analysis. Small-amplitude yet periodic nutation is also observed in the simulations.

cond-mat.soft↗

arXiv2024

Chiral active systems near a substrate: Emergent damping length controlled by fluid friction

Chiral active fluids show the emergence of a turbulent behavior characterized by multiple dynamic vortices whose maximum size is specific for each experimental system. This is in contrast to hydrodynamic simulations in which the size of vortices is only limited by the system size. We propose and develop an approach to model the effect of friction close to a surface in a particle based hydrodynamic simulation method in two dimensions, in which the friction coefficient can be related to the system parameters and to the emergence of a damping length. This length limits the size of the emergent vortices, and influences other relevant system properties such as the actuated velocity, rotational diffusion, or the cutoff of the energy spectra. Comparison of simulation and experimental results show a good agreement which demonstrates the predictive capabilities of the approach, which can be applied to a wider class of quasi-two-dimensional systems with friction.

cond-mat.soft↗

arXiv2024

Alignment-Induced Self-Organization of Autonomously Steering Microswimmers: Turbulence, Vortices, and Jets

Systems of motile microorganisms exhibit a multitude of collective phenomena, including motility-induced phase separation and turbulence. Sensing of the environment and adaptation of movement plays an essential role in the emergent behavior. We study the collective motion of wet self-steering polar microswimmers, which align their propulsion direction hydrodynamically with that of their neighbors, by mesoscale hydrodynamics simulations. The simulations of the employed squirmer model reveal a distinct dependence on the swimmer flow field, i.e., pullers versus pushers. The collective motion of pushers is characterized by active turbulence, with nearly homogeneous density and a Gaussian velocity distribution. Pullers exhibit a strong tendency for clustering and display velocity and vorticity distributions with fat exponential tails; their dynamics is chaotic, with a temporal appearance of vortex rings and fluid jets. Our results show that the collective behavior of intelligent microswimmers is very diverse and still offers many surprises to be discovered.

cond-mat.soft↗

arXiv2024

HTMPC: A heavily templated C++ library for large scale particle-based mesoscale hydrodynamics simulations using multiparticle collision dynamics

We present HTMPC, a Heavily Templated C++ library for large-scale simulations implementing multi-particle collision dynamics (MPC), a particle-based mesoscale hydrodynamic simulation method. The implementation is plugin-based, and designed for distributed computing over an arbitrary number of MPI ranks. By abstracting the hardware-dependent parts of the implementation, we provide an identical application-code base for various architectures, currently supporting CPUs and CUDA-capable GPUs. We have examined the code for a system of more than a trillion MPC particles distributed over a few thousand MPI ranks (GPUs), demonstrating the scalability of the implementation and its applicability to large-scale hydrodynamic simulations. As showcases, we examine passive and active suspension of colloids, which confirms the extensibility and versatility of our plugin-based implementation.

cond-mat.soft↗

arXiv2024

Interacting Streams of Cognitive Active Agents in a Three-Way Intersection

The emergent collective motion of active agents - in particular pedestrians - at a three-way intersection is studied by Langevin simulations of cognitive intelligent active Brownian particles (iABPs) with directed visual perception and self-steering avoidance. Depending on the maneuverability $\Omega$, the goal fixation $K$, and the vision angle $\psi$, different types of pedestrian motion emerge. At intermediate relative maneuverability $\Delta = \Omega/K$ and large $\psi$, pedestrians have noisy trajectories due to multiple scattering events as they encounter other pedestrians in their field of view. For $\psi = \pi$ and large relative maneuverability $\Delta$, an effectively jammed state is found, which belongs to the percolation universality class. For small $\psi$, agents exhibit localised clustering and flocking, while for intermediate $\psi$ self-organized rotational flows can emerge. The analysis of mean squared displacement and velocity auto-correlation of the agents reveals that the motion is well described by fractional Brownian Motion with positively correlated noise. Finally, despite the rich variety of collective behaviour, the fundamental flow diagram for the three-way-crossing setup shows a universal curve for the different vision angles. Our research provides valuable insights into the importance of vision angle and self-steering avoidance on pedestrian dynamics in semi-dense crowds.

cond-mat.stat-mech↗

arXiv2024

Swirling due to misaligned perception-dependent motility

A system of particles with motility variable in terms of a vision-type of perception is here investigated by a combination of Langevin dynamics simulations in two-dimensional systems and an analytical approach based on conservation law principles. Persistent swirling with predetermined direction is here induced by differentiating the self-propulsion direction and the perception cone axis. Clusters can have a fluid-like center with a rotating outer layer, or display a solid-like rotation driven by the outer layer activity. Discontinuous motility with misaligned perception might therefore serve as a powerful self-organization strategy in micro-robots.

cond-mat.soft↗

arXiv2024

Phase Behavior and Dynamics of Active Brownian Particles in an Alignment Field

Self-propelled particles that are subject to noise are a well-established generic model system for active matter. A homogeneous alignment field can be used to orient the direction of the self-propulsion velocity and to model systems like phoretic Janus particles with a magnetic dipole moment or magnetotactic bacteria in an external magnetic field. Computer simulations are used to predict the phase behavior and dynamics of self-propelled Brownian particles in a homogeneous alignment field in two dimensions. Phase boundaries of the gas-liquid coexistence region are calculated for various P\'eclet numbers, particle densities, and alignment field strengths. Critical points and exponents are calculated and, in agreement with previous simulations, do not seem to belong to the universality class of the 2D Ising model. Finally, the dynamics of spinodal decomposition for quenching the system from the one-phase to the two-phase coexistence region by increasing P\'eclet number is characterized. Our results may help to identify parameters for optimal transport of active matter in complex environments.

cond-mat.stat-mech↗

arXiv2024

Controlling Inter-Particle Distances in Crowds of Motile, Cognitive, Active Particles

Distance control in many-particle systems is a fundamental problem in nature. This becomes particularly relevant in systems of active agents, which can sense their environment and react by adjusting their direction of motion. We employ agent-based simulations to investigate the complex interplay between agent activity, characterized by P{\'e}clet number $Pe$, reorientation maneuverability $\Omega$, vision angle $\theta$ and vision range $R_0$, and agent density, which determines agent distancing and dynamics. We focus on semi-dense crowds, where the vision range is much larger than the particle size. The minimal distance to the nearest neighbors, exposure time, and persistence of orientation direction are analyzed to characterize the behavior. With increasing particle speed at fixed maneuverability, particles approach each other more closely, and exhibit shorter exposure times. The temporal persistence of motion decreases with increasing $Pe$, reflecting the impact of activity and maneuverability on direction changes. For a vision angle $\theta=\pi/4$, we observe the emergence of flocking aggregates with a band-like structure, reminiscent of the Viscek model. Additionally, for vision angles $\theta\ge \pi/2$, several quantities are found to display a universal scaling behavior with scaling variable $Pe^{3/2}/\Omega$. Our results are in good agreement with recent experiments of pedestrians in confined spaces.

physics.bio-ph↗

arXiv2024

Collective behavior of squirmers in thin films

Bacteria in biofilms form complex structures and can collectively migrate within mobile aggregates, which is referred to as swarming. This behavior is influenced by a combination of various factors, including morphological characteristics and propulsive forces of swimmers, their volume fraction within a confined environment, and hydrodynamic and steric interactions between them. In our study, we employ the squirmer model for microswimmers and the dissipative particle dynamics method for fluid modeling to investigate the collective motion of swimmers in thin films. The film thickness permits a free orientation of non-spherical squirmers, but constraints them to form a two-layered structure at maximum. Structural and dynamic properties of squirmer suspensions confined within the slit are analyzed for different volume fractions of swimmers, motility types (e.g., pusher, neutral squirmer, puller), and the presence of a rotlet dipolar flow field, which mimics the counter-rotating flow generated by flagellated bacteria. Different states are characterized, including a gas-like phase, swarming, and motility-induced phase separation, as a function of increasing volume fraction. Our study highlights the importance of an anisotropic swimmer shape, hydrodynamic interactions between squirmers, and their interaction with the walls for the emergence of different collective behaviors. Interestingly, the formation of collective structures may not be symmetric with respect to the two walls. Furthermore, the presence of a rotlet dipole significantly mitigates differences in the collective behavior between various swimmer types. These results contribute to a better understanding of the formation of bacterial biofilms and the emergence of collective states in confined active matter.

cond-mat.soft↗

arXiv2023

Motion of microswimmers in cylindrical microchannels

Biological and artificial microswimmers often have to propel through a variety of environments, ranging from heterogeneous suspending media to strong geometrical confinement. Under confinement, local flow fields generated by microswimmers, and steric and hydrodynamic interactions with their environment determine the locomotion. We propose a squirmer-like model to describe the motion of microswimmers in cylindrical microchannels, where propulsion is generated by a fixed surface slip velocity. The model is studied analytically for cylindrical swimmer shapes, and by numerical hydrodynamics simulations for spherical and spheroidal shapes. For the numerical simulations, we employ the dissipative particle dynamics method for modelling fluid flow. Both the analytical model and simulations show that the propulsion force increases with increasing confinement. However, the swimming velocity under confinement remains lower than the swimmer speed without confinement for all investigated conditions. In simulations, different swimming modes (i.e. pusher, neutral, puller) are investigated, and found to play a significant role in the generation of propulsion force when a swimmer approaches a dead end of a capillary. Propulsion generation in confined systems is local, such that the generated flow field generally vanishes beyond the characteristic size of the swimmer. These results contribute to a better understanding of microswimmer force generation and propulsion under strong confinement, including the motion in porous media and in narrow channels.

cond-mat.soft↗